Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0152141 Helianthus annuus HOM05D001571 ORTHO05D002889 2.9e-70 268.5 136 100.0
HanXRQChr14g0454971 Helianthus annuus HOM05D001571 ORTHO05D002889 9.3e-37 157.1 113 73.5
ECA238G4792 Erigeron canadensis HOM05D000915 ORTHO05D004661 3.0e-35 152.1 140 57.9
Lj1C573G6 Lonicera japonica HOM05D001571 ORTHO05D002889 1.9e-26 122.9 142 47.2
Actinidia34704 Actinidia chinensis HOM05D001571 ORTHO05D002889 2.5e-26 122.5 139 48.9
Nitab4.5_0001677g0100 Nicotiana tabacum HOM05D001571 ORTHO05D002889 1.3e-25 120.2 140 47.9
Dinv17156 Davidia involucrata HOM05D001571 ORTHO05D002889 1.6e-25 119.8 120 53.3
Nitab4.5_0001653g0030 Nicotiana tabacum HOM05D001571 ORTHO05D002889 4.8e-25 118.2 144 47.2
Atru.chr10.130 Acer truncatum HOM05D001571 ORTHO05D002889 1.1e-24 117.1 140 47.9
Atru.chr10.132 Acer truncatum HOM05D001571 ORTHO05D002889 1.1e-24 117.1 140 47.9
TAR654G0003 Trochodendron aralioides HOM05D001571 ORTHO05D002889 1.1e-24 117.1 139 49.6
CSS0003036 Camellia sinensis var. sinensis HOM05D001571 ORTHO05D002889 1.8e-24 116.3 140 47.1
Nn7g37464 Nelumbo nucifera HOM05D001571 ORTHO05D002889 2.4e-24 115.9 120 50.0
TAR636G2423 Trochodendron aralioides HOM05D001571 ORTHO05D002889 2.4e-24 115.9 116 53.4
Rhsim09G0127900 Rhododendron simsii HOM05D001571 ORTHO05D002889 5.3e-24 114.8 145 44.8
Atru.chr10.129 Acer truncatum HOM05D001571 ORTHO05D002889 6.9e-24 114.4 140 47.9
Hma1.2p1_1218F.1_g267650 Hydrangea macrophylla HOM05D001571 ORTHO05D002889 2.0e-23 112.8 120 50.8
PSO675G5555 Papaver somniferum HOM05D001571 ORTHO05D002889 2.0e-23 112.8 137 45.3
Cc00_g25060 Coffea canephora HOM05D001571 ORTHO05D002889 2.6e-23 112.5 138 45.7
Nn1g09497 Nelumbo nucifera HOM05D001571 ORTHO05D002889 4.5e-23 111.7 139 44.6
PSO732G0537 Papaver somniferum HOM05D001571 ORTHO05D002889 5.9e-23 111.3 113 52.2
QL01p051860 Quercus lobata HOM05D001571 ORTHO05D002889 5.9e-23 111.3 114 50.0
PGSC0003DMG400016240 Solanum tuberosum HOM05D001571 ORTHO05D002889 7.6e-23 110.9 118 50.0
CAN.G691.21 Capsicum annuum HOM05D001571 ORTHO05D002889 1.3e-22 110.2 120 50.0
Cfa002310 Carpinus fangiana HOM05D001571 ORTHO05D002889 1.3e-22 110.2 118 49.2
Peaxi162Scf29894g00007 Petunia axillaris HOM05D001571 ORTHO05D002889 1.7e-22 109.8 120 49.2
Sopen11g004590 Solanum pennellii HOM05D001571 ORTHO05D002889 1.7e-22 109.8 118 50.0
vmacro10421 Vaccinium macrocarpon HOM05D001571 ORTHO05D002889 1.7e-22 109.8 145 42.8
CiPaw.04G180500 Carya illinoinensis HOM05D001571 ORTHO05D002889 2.2e-22 109.4 117 48.7
Solyc11g008810.2 Solanum lycopersicum HOM05D001571 ORTHO05D002889 2.2e-22 109.4 118 50.0
Lj1C640G1 Lonicera japonica HOM05D001571 ORTHO05D002889 3.8e-22 108.6 142 44.4
PSO732G0499 Papaver somniferum HOM05D001571 ORTHO05D002889 5.0e-22 108.2 138 43.5
MSTRG.9233 Avicennia marina HOM05D001571 ORTHO05D002889 6.5e-22 107.8 120 49.2
Oeu034727.1 Olea europaea HOM05D001571 ORTHO05D002889 6.5e-22 107.8 139 43.2
Aqoxy1G01860 Aquilegia oxysepala HOM05D001571 ORTHO05D002889 8.5e-22 107.5 137 45.3
Ciclev10014808m.g Citrus clementina HOM05D001571 ORTHO05D002889 8.5e-22 107.5 143 42.7
Ah.06g195130 Amaranthus hybridus HOM05D001571 ORTHO05D002889 1.4e-21 106.7 135 43.0
Migut.F02077 Erythranthe guttata HOM05D001571 ORTHO05D002889 1.4e-21 106.7 120 49.2
SalBow1G3071 Salvia bowleyana HOM05D001571 ORTHO05D002889 2.5e-21 105.9 120 47.5
RhsimUnG0038100 Rhododendron simsii HOM05D001571 ORTHO05D002889 4.2e-21 105.1 165 40.0
SalBow1G6620 Salvia bowleyana HOM05D001571 ORTHO05D002889 4.2e-21 105.1 120 47.5
HPP92_011711 Vanilla planifolia HOM05D001571 ORTHO05D002889 1.2e-20 103.6 136 41.2
TWI18G1160 Tripterygium wilfordii HOM05D001571 ORTHO05D002889 2.1e-20 102.8 120 49.2
RhsimUnG0038300 Rhododendron simsii HOM05D001571 ORTHO05D002889 2.7e-20 102.4 165 39.4
DCAR_023905 Daucus carota HOM05D001571 ORTHO05D002889 3.6e-20 102.1 140 40.7
CARHR057340 Cardamine hirsuta HOM05D001571 ORTHO05D002889 6.1e-20 101.3 144 40.3
Sabra08G0059100 Salix brachista HOM05D001571 ORTHO05D002889 6.1e-20 101.3 139 43.9
Carub.0002s1142 Capsella rubella HOM05D001571 ORTHO05D002889 7.9e-20 100.9 145 39.3
Thhalv10018379m.g Eutrema salsugineum HOM05D001571 ORTHO05D002889 7.9e-20 100.9 144 39.6
Sp5g20510 Schrenkiella parvula HOM05D001571 ORTHO05D002889 7.9e-20 100.9 144 38.9
AUR62006602 Chenopodium quinoa HOM05D001571 ORTHO05D002889 1.0e-19 100.5 120 47.5
Potri.008G079400 Populus trichocarpa HOM05D001571 ORTHO05D002889 1.8e-19 99.8 139 43.2
RhsimUnG0108400 Rhododendron simsii HOM05D001571 ORTHO05D002889 1.8e-19 99.8 134 42.5
EL10Ac4g10043 Beta vulgaris HOM05D001571 ORTHO05D002889 6.7e-19 97.8 133 43.6
Manes.12G000500 Manihot esculenta HOM05D001571 ORTHO05D002889 6.7e-19 97.8 141 39.7
AT1G65590 Arabidopsis thaliana HOM05D001571 ORTHO05D002889 8.8e-19 97.4 144 39.6
COL.COLO4_22777 Corchorus olitorius HOM05D001571 ORTHO05D002889 1.5e-18 96.7 115 44.3
Hund07393 Selenicereus undatus HOM05D001571 ORTHO05D002889 1.5e-18 96.7 149 38.9
TWI53G1043 Tripterygium wilfordii HOM05D001571 ORTHO05D002889 1.5e-18 96.7 125 44.0
Thecc.05G131200 Theobroma cacao HOM05D001571 ORTHO05D002889 7.4e-18 94.4 137 41.6
A07p32900 Brassica napus HOM05D001571 ORTHO05D002889 9.7e-18 94.0 144 38.2
BraA07t30916Z Brassica rapa HOM05D001571 ORTHO05D002889 9.7e-18 94.0 144 38.2
AL2G22550 Arabidopsis lyrata HOM05D001571 ORTHO05D002889 1.3e-17 93.6 144 37.5
C06p39120 Brassica napus HOM05D001571 ORTHO05D002889 1.3e-17 93.6 144 38.9
BolC6t39005H Brassica oleracea HOM05D001571 ORTHO05D002889 1.3e-17 93.6 144 38.9
ClCG11G011060 Citrullus lanatus HOM05D001571 ORTHO05D002889 3.7e-17 92.0 145 38.6
Aa31LG2G2560 Aethionema arabicum HOM05D001571 ORTHO05D002889 8.2e-17 90.9 116 41.4
Duzib128G1493 Durio zibethinus HOM05D001571 ORTHO05D002889 1.1e-16 90.5 124 43.5
GSVIVG01004010001 Vitis vinifera HOM05D001571 ORTHO05D002889 1.1e-16 90.5 102 50.0
Zm00001eb288150 Zea mays HOM05D001571 ORTHO05D002889 1.1e-16 90.5 116 44.0
Zm00001eb365840 Zea mays HOM05D001571 ORTHO05D002889 1.1e-16 90.5 116 39.7
Duzib128G1151 Durio zibethinus HOM05D001571 ORTHO05D002889 1.4e-16 90.1 124 43.5
AUR62000255 Chenopodium quinoa HOM05D001571 ORTHO05D002889 2.4e-16 89.4 113 46.0
Sed0007647 Sechium edule HOM05D001571 ORTHO05D002889 2.4e-16 89.4 130 40.8
MELO3C008768.2 Cucumis melo HOM05D001571 ORTHO05D002889 3.1e-16 89.0 145 39.3
COL.COLO4_22779 Corchorus olitorius HOM05D001571 ORTHO05D002889 4.1e-16 88.6 143 37.8
Os01g0891000 Oryza sativa ssp. japonica HOM05D001571 ORTHO05D002889 9.1e-16 87.4 116 39.7
CsaV3_2G009420 Cucumis sativus L. HOM05D001571 ORTHO05D002889 2.6e-15 85.9 128 40.6
Sed0014678 Sechium edule HOM05D001571 ORTHO05D002889 2.6e-15 85.9 129 38.8
Os05g0415700 Oryza sativa ssp. japonica HOM05D001571 ORTHO05D002889 3.4e-15 85.5 115 39.1
unitig_0.g2811 Utricularia gibba HOM05D001571 ORTHO05D002889 1.3e-14 83.6 132 39.4
Gohir.A01G123900 Gossypium hirsutum HOM05D001571 ORTHO05D002889 5.0e-14 81.6 137 38.0
THA.LOC104805676 Tarenaya hassleriana HOM05D001571 ORTHO05D002889 6.5e-14 81.3 104 42.3
Gohir.D01G111601 Gossypium hirsutum HOM05D001571 ORTHO05D002889 8.5e-14 80.9 137 38.0
Gorai.002G136400 Gossypium raimondii HOM05D001571 ORTHO05D002889 8.5e-14 80.9 137 38.0
SEGI_20989 Sequoiadendron giganteum HOM05D001571 ORTHO05D002889 5.5e-13 78.2 119 37.0
BcaB03g15328 Brassica carinata HOM05D001571 ORTHO05D002889 2.1e-12 76.3 104 43.3
HanXRQChr02g0052461 Helianthus annuus HOM05D000178 ORTHO05D018170 2.7e-12 75.9 46 76.1
Haze_24515 Corylus avellana HOM05D001571 ORTHO05D002889 1.0e-11 73.9 121 40.5
Sc16g0010750 Simmondsia chinensis HOM05D001571 ORTHO05D002889 9.7e-10 67.4 110 35.5
Cc03_g08320 Coffea canephora HOM05D001571 ORTHO05D002889 1.7e-09 66.6 87 43.7
Sabra08G0036100 Salix brachista HOM05D001571 ORTHO05D002889 2.0e-07 59.7 119 36.1
MD01G1120700 Malus domestica HOM05D001571 ORTHO05D002889 3.4e-07 58.9 127 33.9
Prupe.2G228000 Prunus persica HOM05D001571 ORTHO05D002889 3.4e-07 58.9 157 31.8
CDE07G1781 Ceratophyllum demersum HOM05D001571 ORTHO05D002889 4.5e-07 58.5 125 35.2
Potri.010G211000 Populus trichocarpa HOM05D001571 ORTHO05D002889 4.5e-07 58.5 119 35.3
MD07G1190100 Malus domestica HOM05D001571 ORTHO05D002889 1.0e-06 57.4 122 35.2
ATR0751G109 Amborella trichopoda HOM05D001571 ORTHO05D002889 1.7e-06 56.6 121 33.1
Pp3c12_14920 Physcomitrium patens HOM05D001571 ORTHO05D002889 1.7e-06 56.6 116 36.2
MSTRG.12661 Avicennia marina HOM05D001571 ORTHO05D002889 2.9e-06 55.8 117 35.9
HPP92_001427 Vanilla planifolia HOM05D001571 ORTHO05D002889 2.9e-06 55.8 119 31.1
MBI02_g32398_MAGBIO Magnolia biondii HOM05D001571 ORTHO05D002889 3.8e-06 55.5 117 31.6
Mapoly0053s0009 Marchantia polymorpha HOM05D001571 ORTHO05D002889 3.8e-06 55.5 121 28.9
Aqoxy2G01996 Aquilegia oxysepala HOM05D001571 ORTHO05D002889 5.0e-06 55.1 120 30.0
Zm00001eb266300 Zea mays HOM05D001571 ORTHO05D002889 6.5e-06 54.7 118 32.2
Cpa.g.sc88.35 Carica papaya HOM05D001571 ORTHO05D002889 8.5e-06 54.3 58 44.8
AUR62022525 Chenopodium quinoa HOM05D001571 ORTHO05D002889 8.5e-06 54.3 125 32.8
COL.COLO4_10922 Corchorus olitorius HOM05D001571 ORTHO05D002889 8.5e-06 54.3 123 32.5
DCAR_015228 Daucus carota HOM05D001571 ORTHO05D002889 8.5e-06 54.3 127 30.7


User provided reference genes

Program Settings