Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 3.5e-74 281.6 147 100.0
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 3.5e-66 255.0 147 89.1
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 7.9e-58 227.3 147 83.0
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.1e-56 223.4 147 81.0
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.1e-56 223.4 147 81.0
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.1e-56 223.4 147 81.0
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 1.5e-56 223.0 147 81.6
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 2.2e-55 219.2 147 79.6
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 1.1e-54 216.9 147 78.9
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 2.4e-54 215.7 147 77.6
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 4.1e-54 214.9 147 78.9
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 4.1e-54 214.9 147 76.9
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 5.3e-54 214.5 147 76.9
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 6.9e-54 214.2 147 76.9
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 9.1e-54 213.8 147 78.2
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 1.2e-53 213.4 147 78.2
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 1.5e-53 213.0 147 78.9
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 2.0e-53 212.6 147 77.6
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 2.6e-53 212.2 147 76.9
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 2.6e-53 212.2 147 78.2
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 5.9e-53 211.1 147 76.9
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 7.7e-53 210.7 147 78.9
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 7.7e-53 210.7 149 77.2
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 1.3e-52 209.9 147 77.6
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 1.3e-52 209.9 147 77.6
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 1.7e-52 209.5 147 75.5
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 2.2e-52 209.1 147 74.8
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 6.5e-52 207.6 147 76.2
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 6.5e-52 207.6 147 78.2
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 6.5e-52 207.6 147 75.5
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 6.5e-52 207.6 147 75.5
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 6.5e-52 207.6 147 76.2
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 6.5e-52 207.6 147 76.2
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 8.5e-52 207.2 144 77.1
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 8.5e-52 207.2 144 77.1
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 8.5e-52 207.2 144 77.1
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 1.1e-51 206.8 147 76.9
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.9e-51 206.1 144 76.4
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.9e-51 206.1 144 77.1
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 2.5e-51 205.7 147 74.1
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 2.5e-51 205.7 147 75.5
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 4.2e-51 204.9 147 76.2
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 7.2e-51 204.1 147 76.9
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 7.2e-51 204.1 147 76.2
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 9.4e-51 203.8 147 76.9
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 9.4e-51 203.8 148 76.4
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 1.2e-50 203.4 147 74.8
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 1.2e-50 203.4 144 75.7
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 1.2e-50 203.4 147 72.8
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 1.2e-50 203.4 147 72.8
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 1.6e-50 203.0 146 76.0
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 1.6e-50 203.0 147 73.5
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.1e-50 202.6 147 74.8
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 2.1e-50 202.6 147 74.8
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 2.7e-50 202.2 148 75.7
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 2.7e-50 202.2 148 75.7
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 3.6e-50 201.8 147 75.5
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 3.6e-50 201.8 147 72.8
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 4.7e-50 201.4 147 74.1
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 4.7e-50 201.4 147 74.1
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 6.1e-50 201.1 138 78.3
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 6.1e-50 201.1 147 74.8
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 6.1e-50 201.1 144 72.9
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 7.9e-50 200.7 147 73.5
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 7.9e-50 200.7 147 76.9
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 1.0e-49 200.3 147 73.5
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 1.8e-49 199.5 147 73.5
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 1.8e-49 199.5 147 74.8
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 2.3e-49 199.1 147 74.8
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 3.9e-49 198.4 150 71.3
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 6.7e-49 197.6 147 73.5
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 1.5e-48 196.4 147 75.5
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 5.7e-48 194.5 147 70.1
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 5.7e-48 194.5 144 70.1
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 1.7e-47 193.0 147 72.8
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 4.8e-47 191.4 147 66.0
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 8.2e-47 190.7 139 74.1
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 1.1e-46 190.3 149 68.5
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 4.1e-46 188.3 149 67.8
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 5.3e-46 188.0 155 69.7
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 7.0e-46 187.6 149 75.2
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 1.5e-45 186.4 147 69.4
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 2.6e-45 185.7 147 70.7
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 3.4e-45 185.3 150 68.7
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 3.4e-45 185.3 150 68.7
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 4.5e-45 184.9 147 66.7
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 2.9e-44 182.2 151 68.9
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 2.9e-44 182.2 153 68.0
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 1.9e-43 179.5 151 66.9
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 2.5e-43 179.1 154 68.2
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 7.2e-43 177.6 152 67.1
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 9.4e-43 177.2 152 66.4
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.6e-42 176.4 149 67.1
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 8.0e-42 174.1 115 80.0
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 1.8e-41 172.9 155 65.2
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 2.3e-41 172.6 149 66.4
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 2.3e-41 172.6 155 64.5
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 3.0e-41 172.2 156 65.4
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 5.2e-41 171.4 158 62.7
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 2.6e-40 169.1 154 64.3
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 2.6e-40 169.1 149 63.8
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 7.4e-40 167.5 149 63.1
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.3e-39 166.8 147 63.3
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.2e-39 166.0 147 63.3
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.8e-39 165.6 147 63.9
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 2.0e-37 159.5 109 79.8
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 2.6e-37 159.1 105 81.0
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.0e-36 157.1 142 62.7
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.0e-36 157.1 142 62.7
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 1.1e-35 153.7 161 54.7
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 2.1e-34 149.4 140 64.3
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 2.1e-34 149.4 114 78.1
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 4.7e-34 148.3 129 64.3
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 1.0e-33 147.1 150 56.7
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 2.3e-33 146.0 100 77.0
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 3.3e-32 142.1 147 55.1
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 7.5e-32 141.0 135 59.3
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 7.0e-30 134.4 147 56.5
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 4.5e-29 131.7 153 51.6
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 3.8e-28 128.6 135 58.5
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 5.5e-27 124.8 87 74.7
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 1.6e-26 123.2 87 73.6
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 3.6e-26 122.1 128 52.3
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 4.7e-26 121.7 90 76.7
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 4.7e-26 121.7 86 74.4
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 5.2e-25 118.2 146 48.6
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 3.4e-24 115.5 167 47.3
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 8.6e-20 100.9 149 45.0
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 8.0e-18 94.4 134 42.5
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 1.8e-17 93.2 79 59.5
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 6.8e-17 91.3 66 71.2
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 6.8e-17 91.3 66 71.2
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 4.4e-16 88.6 78 60.3
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 2.8e-15 85.9 79 59.5
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 1.8e-14 83.2 79 54.4
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 3.5e-13 79.0 71 57.7
ECA233G0803 Erigeron canadensis HOM05D005136 ORTHO05D006619 4.5e-13 78.6 125 47.2
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.9e-12 75.9 69 58.0
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 3.8e-12 75.5 69 52.2
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 3.8e-12 75.5 69 58.0
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 5.0e-12 75.1 69 56.5
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 5.0e-12 75.1 145 37.9
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 8.0e-10 67.8 72 48.6
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 1.4e-09 67.0 72 48.6
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 6.8e-09 64.7 70 48.6
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 2.0e-08 63.2 72 50.0
Solyc09g082750.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 9.2e-06 54.3 72 38.9


User provided reference genes

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