Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 2.3e-82 308.9 163 100.0
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 3.1e-47 192.2 154 66.2
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 3.0e-26 122.5 136 52.9
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 3.2e-23 112.5 162 46.3
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 7.0e-23 111.3 148 45.9
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 3.5e-22 109.0 146 46.6
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 4.5e-22 108.6 155 43.2
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 7.8e-22 107.8 126 51.6
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 2.9e-21 105.9 173 40.5
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 3.9e-21 105.5 146 47.9
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 5.0e-21 105.1 171 41.5
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 5.0e-21 105.1 158 43.7
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 5.0e-21 105.1 147 44.9
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 6.6e-21 104.8 157 46.5
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 1.5e-20 103.6 136 47.1
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 2.5e-20 102.8 149 45.0
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 2.5e-20 102.8 160 43.8
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 3.3e-20 102.4 141 46.8
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 5.6e-20 101.7 141 45.4
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 5.6e-20 101.7 148 45.3
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 9.5e-20 100.9 155 43.9
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 9.5e-20 100.9 148 42.6
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 1.2e-19 100.5 145 42.1
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 2.1e-19 99.8 159 42.8
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 2.1e-19 99.8 159 44.0
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 3.6e-19 99.0 159 40.9
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 3.6e-19 99.0 176 39.2
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 4.7e-19 98.6 125 47.2
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 4.7e-19 98.6 156 42.3
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 6.1e-19 98.2 157 43.9
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 8.0e-19 97.8 163 42.9
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 8.0e-19 97.8 160 42.5
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 1.4e-18 97.1 148 43.2
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.4e-18 97.1 161 42.2
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.4e-18 97.1 161 42.2
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.4e-18 97.1 165 38.2
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 1.4e-18 97.1 128 47.7
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 1.8e-18 96.7 170 40.0
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 1.8e-18 96.7 157 43.9
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.8e-18 96.7 156 42.9
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.3e-18 96.3 159 44.0
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.0e-18 95.5 150 44.7
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 4.0e-18 95.5 158 41.8
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 5.2e-18 95.1 175 37.7
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 5.2e-18 95.1 150 44.7
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 5.2e-18 95.1 175 45.1
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 8.9e-18 94.4 165 37.0
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 1.2e-17 94.0 178 39.3
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.2e-17 94.0 167 40.1
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 2.0e-17 93.2 168 44.6
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 2.6e-17 92.8 176 40.3
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 2.6e-17 92.8 159 40.9
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 2.6e-17 92.8 144 41.0
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 3.4e-17 92.4 173 41.0
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 7.5e-17 91.3 153 41.8
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 7.5e-17 91.3 171 45.6
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 9.8e-17 90.9 148 44.6
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 9.8e-17 90.9 147 42.2
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 9.8e-17 90.9 171 42.1
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 1.3e-16 90.5 146 41.1
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 1.3e-16 90.5 156 43.6
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 1.7e-16 90.1 165 38.8
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 1.7e-16 90.1 165 38.8
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 1.7e-16 90.1 165 38.8
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 1.7e-16 90.1 155 41.3
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 2.2e-16 89.7 148 41.2
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 2.2e-16 89.7 127 42.5
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 2.2e-16 89.7 167 39.5
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 3.7e-16 89.0 154 38.3
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 3.7e-16 89.0 149 43.0
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 4.9e-16 88.6 158 41.1
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 4.9e-16 88.6 163 39.9
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 4.9e-16 88.6 183 37.2
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 6.4e-16 88.2 148 40.5
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 6.4e-16 88.2 148 40.5
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 6.4e-16 88.2 148 40.5
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 6.4e-16 88.2 183 36.6
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 1.1e-15 87.4 155 39.4
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 4.1e-15 85.5 193 38.3
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 5.4e-15 85.1 166 38.0
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 5.4e-15 85.1 170 39.4
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 7.0e-15 84.7 159 39.6
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 7.0e-15 84.7 176 38.6
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 7.0e-15 84.7 166 39.8
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 9.2e-15 84.3 130 41.5
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 1.2e-14 84.0 162 37.7
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 1.2e-14 84.0 162 37.7
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 1.6e-14 83.6 155 40.6
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 2.0e-14 83.2 160 38.1
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 2.7e-14 82.8 178 37.1
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 3.5e-14 82.4 168 38.1
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 3.5e-14 82.4 176 37.5
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 3.5e-14 82.4 153 37.9
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 6.0e-14 81.6 165 37.6
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 6.0e-14 81.6 183 35.5
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 7.8e-14 81.3 162 38.9
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 1.0e-13 80.9 144 36.8
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 1.0e-13 80.9 175 37.7
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 1.3e-13 80.5 158 38.6
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 1.3e-13 80.5 145 37.9
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 1.3e-13 80.5 145 37.9
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 1.3e-13 80.5 140 43.6
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 1.3e-13 80.5 147 40.1
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 2.3e-13 79.7 149 39.6
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 2.3e-13 79.7 137 42.3
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 5.0e-13 78.6 164 37.8
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 5.0e-13 78.6 157 37.6
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 6.6e-13 78.2 159 39.0
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 6.6e-13 78.2 139 40.3
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 8.6e-13 77.8 149 38.3
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 1.1e-12 77.4 152 40.1
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 1.5e-12 77.0 176 38.1
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 2.5e-12 76.3 178 34.8
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 2.5e-12 76.3 185 33.5
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 3.3e-12 75.9 169 40.8
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 7.3e-12 74.7 168 34.5
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 1.2e-11 73.9 96 43.8
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 6.2e-11 71.6 153 36.6
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 8.0e-11 71.2 155 37.4
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 2.3e-10 69.7 137 36.5
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 1.2e-09 67.4 158 34.8
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 1.5e-09 67.0 149 38.9
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 3.4e-09 65.9 117 41.9
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 5.8e-09 65.1 154 37.0
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 1.3e-08 63.9 102 37.3
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.3e-08 63.9 102 37.3
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.3e-08 63.9 144 33.3
HPP92_006851 Vanilla planifolia HOM05D064031 ORTHO05D005944 1.3e-08 63.9 156 30.8
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 2.2e-08 63.2 178 32.0
HPP92_006868 Vanilla planifolia HOM05D064031 ORTHO05D005944 2.2e-08 63.2 156 30.8
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 3.7e-08 62.4 143 36.4
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 4.9e-08 62.0 126 38.1
HPP92_003138 Vanilla planifolia HOM05D005065 ORTHO05D005944 4.9e-08 62.0 137 37.2
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 4.9e-08 62.0 172 31.4
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 8.3e-08 61.2 157 33.1
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.1e-07 60.8 157 33.1
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 3.2e-07 59.3 177 33.3
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 4.1e-07 58.9 157 32.5
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 9.2e-07 57.8 107 41.1
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 1.2e-06 57.4 98 40.8
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.6e-06 57.0 164 31.7
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 1.6e-06 57.0 105 40.0
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 6.0e-06 55.1 122 34.4


User provided reference genes

Program Settings