Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0149241 Helianthus annuus HOM05D000045 ORTHO05D000067 3.6e-38 161.0 75 100.0
HanXRQChr15g0472391 Helianthus annuus HOM05D000045 ORTHO05D000067 2.2e-27 125.2 60 95.0
HanXRQChr13g0424971 Helianthus annuus HOM05D000045 ORTHO05D000067 1.4e-21 105.9 60 76.7
ECA246G2168 Erigeron canadensis HOM05D000045 ORTHO05D000067 8.8e-13 76.6 61 55.7
ECA240G0952 Erigeron canadensis HOM05D000045 ORTHO05D000067 3.4e-12 74.7 61 54.1
ECA234G4315 Erigeron canadensis HOM05D000045 ORTHO05D000067 5.7e-12 73.9 60 48.3
ECA238G0358 Erigeron canadensis HOM05D000045 ORTHO05D000067 7.5e-12 73.6 59 47.5
ECA234G2985 Erigeron canadensis HOM05D003566 ORTHO05D005288 9.7e-12 73.2 60 48.3
ECA232G4828 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.3e-11 72.8 61 52.5
ECA233G1000 Erigeron canadensis HOM05D000045 ORTHO05D000067 1.3e-11 72.8 59 47.5
ECA233G2490 Erigeron canadensis HOM05D000045 ORTHO05D000067 1.3e-11 72.8 62 53.2
ECA240G0117 Erigeron canadensis HOM05D000045 ORTHO05D000067 1.3e-11 72.8 62 53.2
ECA240G3819 Erigeron canadensis HOM05D000045 ORTHO05D000067 1.3e-11 72.8 59 47.5
ECA246G2978 Erigeron canadensis HOM05D000045 ORTHO05D000067 1.7e-11 72.4 62 53.2
ECA247G1672 Erigeron canadensis HOM05D000045 ORTHO05D000067 3.7e-11 71.2 62 48.4
HanXRQChr05g0148991 Helianthus annuus HOM05D000045 ORTHO05D000067 3.7e-11 71.2 62 53.2
ECA240G4816 Erigeron canadensis HOM05D000022 ORTHO05D002153 4.8e-11 70.9 58 48.3
ECA247G2926 Erigeron canadensis HOM05D000045 ORTHO05D000067 4.8e-11 70.9 58 48.3
HanXRQChr12g0384571 Helianthus annuus HOM05D000045 ORTHO05D000067 4.8e-11 70.9 60 53.3
ECA236G1345 Erigeron canadensis HOM05D000045 ORTHO05D000067 8.3e-11 70.1 58 46.6
ECA240G0018 Erigeron canadensis HOM05D000045 ORTHO05D000067 1.1e-10 69.7 60 50.0
ECA246G0965 Erigeron canadensis HOM05D000045 ORTHO05D000067 1.4e-10 69.3 60 50.0
SGA_v2.0_scaffold108G30934 Striga asiatica HOM05D000045 ORTHO05D010054 1.4e-10 69.3 60 50.0
ECA238G1220 Erigeron canadensis HOM05D000045 ORTHO05D000067 2.4e-10 68.6 59 45.8
HanXRQChr10g0279971 Helianthus annuus HOM05D000045 ORTHO05D000067 2.4e-10 68.6 64 45.3
ECA234G3364 Erigeron canadensis HOM05D000045 ORTHO05D000067 5.3e-10 67.4 60 48.3
ECA236G2161 Erigeron canadensis HOM05D000097 ORTHO05D000041 5.3e-10 67.4 63 44.4
ECA247G1374 Erigeron canadensis HOM05D000045 ORTHO05D001421 5.3e-10 67.4 60 43.3
ECA236G4225 Erigeron canadensis HOM05D000045 ORTHO05D000067 7.0e-10 67.0 60 43.3
ECA240G0900 Erigeron canadensis HOM05D000006 ORTHO05D000091 7.0e-10 67.0 60 43.3
ECA248G0094 Erigeron canadensis HOM05D000045 ORTHO05D000067 7.0e-10 67.0 60 43.3
ECA236G2686 Erigeron canadensis HOM05D000031 ORTHO05D000030 9.1e-10 66.6 60 43.3
ECA233G3507 Erigeron canadensis HOM05D000045 ORTHO05D000067 1.2e-09 66.2 60 43.3
ECA236G4481 Erigeron canadensis HOM05D000045 ORTHO05D000067 2.7e-09 65.1 55 47.3
HanXRQChr08g0223531 Helianthus annuus HOM05D000045 ORTHO05D000067 2.7e-09 65.1 60 50.0
ECA236G1456 Erigeron canadensis HOM05D000045 ORTHO05D000067 1.0e-08 63.2 60 41.7
EL10Ac5g12499 Beta vulgaris HOM05D000045 ORTHO05D000067 1.3e-08 62.8 60 41.7
EL10Ac8g19696 Beta vulgaris HOM05D000045 ORTHO05D000067 1.3e-08 62.8 60 41.7
CANSAT78G1647 Cannabis sativa HOM05D000045 ORTHO05D000067 1.3e-08 62.8 46 50.0
ECA233G1818 Erigeron canadensis HOM05D000045 ORTHO05D000067 1.3e-08 62.8 60 45.0
ECA233G2008 Erigeron canadensis HOM05D000045 ORTHO05D000067 1.3e-08 62.8 59 50.8
EL10Ac4g09892 Beta vulgaris HOM05D000045 ORTHO05D000067 1.7e-08 62.4 47 48.9
EL10Ac6g13927 Beta vulgaris HOM05D000045 ORTHO05D010054 1.7e-08 62.4 47 48.9
Eucgr.B01589 Eucalyptus grandis HOM05D000045 ORTHO05D000067 1.7e-08 62.4 59 40.7
HanXRQChr14g0446831 Helianthus annuus HOM05D000045 ORTHO05D000067 1.7e-08 62.4 58 44.8
EL10Ac2g03240 Beta vulgaris HOM05D000045 ORTHO05D000695 2.2e-08 62.0 47 48.9
EL10Ac4g08127 Beta vulgaris HOM05D000045 ORTHO05D000067 2.2e-08 62.0 47 48.9
CANSAT25G3790 Cannabis sativa HOM05D000045 ORTHO05D000067 2.2e-08 62.0 55 49.1
ECA246G1317 Erigeron canadensis HOM05D000045 ORTHO05D000067 2.2e-08 62.0 55 45.5
ECA248G3866 Erigeron canadensis HOM05D000045 ORTHO05D000067 2.2e-08 62.0 62 46.8
HanXRQChr05g0146931 Helianthus annuus HOM05D000045 ORTHO05D000067 2.2e-08 62.0 60 41.7
HanXRQChr07g0199861 Helianthus annuus HOM05D000045 ORTHO05D000067 2.2e-08 62.0 60 41.7
HanXRQChr13g0395991 Helianthus annuus HOM05D000045 ORTHO05D000067 2.2e-08 62.0 63 42.9
HanXRQChr17g0560521 Helianthus annuus HOM05D000045 ORTHO05D000067 2.2e-08 62.0 60 41.7
EL10Ac2g02717 Beta vulgaris HOM05D000045 ORTHO05D000067 3.8e-08 61.2 60 41.7
EL10Ac6g13792 Beta vulgaris HOM05D000045 ORTHO05D000067 3.8e-08 61.2 60 41.7
EL10Ac6g14806 Beta vulgaris HOM05D000045 ORTHO05D000067 3.8e-08 61.2 60 41.7
EL10Ac9g21079 Beta vulgaris HOM05D000045 ORTHO05D000695 3.8e-08 61.2 47 51.1
EL10As3g23329 Beta vulgaris HOM05D000045 ORTHO05D000067 3.8e-08 61.2 60 41.7
TPR.G7097 Trifolium pratense HOM05D000045 ORTHO05D000067 3.8e-08 61.2 62 40.3
EL10Ac4g08128 Beta vulgaris HOM05D000045 ORTHO05D000067 5.0e-08 60.8 47 48.9
EL10Ac5g11372 Beta vulgaris HOM05D000045 ORTHO05D000067 5.0e-08 60.8 60 40.0
CANSAT01G1937 Cannabis sativa HOM05D000045 ORTHO05D000067 5.0e-08 60.8 60 43.3
CANSAT01G2252 Cannabis sativa HOM05D000045 ORTHO05D000067 5.0e-08 60.8 60 43.3
CANSAT64G2902 Cannabis sativa HOM05D000045 ORTHO05D000067 5.0e-08 60.8 60 43.3
Ciclev10013892m.g Citrus clementina HOM05D000045 ORTHO05D000067 5.0e-08 60.8 55 45.5
HanXRQChr09g0259991 Helianthus annuus HOM05D000045 ORTHO05D000067 5.0e-08 60.8 62 40.3
EL10Ac2g03088 Beta vulgaris HOM05D000045 ORTHO05D010054 6.5e-08 60.5 60 41.7
EL10Ac3g06581 Beta vulgaris HOM05D000045 ORTHO05D000067 6.5e-08 60.5 60 41.7
CANSAT11G1698 Cannabis sativa HOM05D000045 ORTHO05D000067 6.5e-08 60.5 55 47.3
HanXRQChr14g0449641 Helianthus annuus HOM05D000045 ORTHO05D000067 8.5e-08 60.1 60 41.7
EL10Ac9g22453 Beta vulgaris HOM05D000045 ORTHO05D000067 1.1e-07 59.7 60 40.0
ECA238G3531 Erigeron canadensis HOM05D000045 ORTHO05D000067 1.1e-07 59.7 60 41.7
Eucgr.C01967 Eucalyptus grandis HOM05D000045 ORTHO05D000067 1.1e-07 59.7 47 44.7
Rhsim09G0160500 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.1e-07 59.7 62 37.1
EL10Ac3g06665 Beta vulgaris HOM05D000045 ORTHO05D000067 1.5e-07 59.3 60 43.3
CANSAT64G1044 Cannabis sativa HOM05D000045 ORTHO05D000067 1.5e-07 59.3 60 41.7
CANSAT78G0142 Cannabis sativa HOM05D000045 ORTHO05D000067 1.5e-07 59.3 73 39.7
TPR.G7453 Trifolium pratense HOM05D000045 ORTHO05D000067 1.5e-07 59.3 62 40.3
PSO063G7583 Papaver somniferum HOM05D000045 ORTHO05D000067 1.9e-07 58.9 58 39.7
TPR.G20361 Trifolium pratense HOM05D000045 ORTHO05D000067 1.9e-07 58.9 60 41.7
Ah.03g145650 Amaranthus hybridus HOM05D000045 ORTHO05D000067 2.5e-07 58.5 62 41.9
Ah.04g157240 Amaranthus hybridus HOM05D000045 ORTHO05D000067 2.5e-07 58.5 62 41.9
Ah.05g172850 Amaranthus hybridus HOM05D000045 ORTHO05D000067 2.5e-07 58.5 62 41.9
Ah.14g080430 Amaranthus hybridus HOM05D000045 ORTHO05D000067 2.5e-07 58.5 62 41.9
Ah.14g081480 Amaranthus hybridus HOM05D000045 ORTHO05D000067 2.5e-07 58.5 62 41.9
EL10Ac5g11586 Beta vulgaris HOM05D000045 ORTHO05D000067 2.5e-07 58.5 60 40.0
ECA233G0097 Erigeron canadensis HOM05D000045 ORTHO05D000067 2.5e-07 58.5 60 43.3
ECA233G1735 Erigeron canadensis HOM05D000045 ORTHO05D000067 2.5e-07 58.5 62 45.2
HanXRQChr13g0412941 Helianthus annuus HOM05D000045 ORTHO05D000067 2.5e-07 58.5 58 43.1
Rhsim08G0146600 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.5e-07 58.5 62 40.3
SGA_v2.0_scaffold180G39666 Striga asiatica HOM05D000045 ORTHO05D010054 2.5e-07 58.5 67 40.3
TPR.G8949 Trifolium pratense HOM05D000045 ORTHO05D000067 2.5e-07 58.5 47 48.9
HanXRQChr17g0533771 Helianthus annuus HOM05D000045 ORTHO05D000067 3.2e-07 58.2 58 43.1
TPR.G34123 Trifolium pratense HOM05D000009 ORTHO05D000008 3.2e-07 58.2 62 41.9
Ciclev10003951m.g Citrus clementina HOM05D000045 ORTHO05D000067 4.2e-07 57.8 63 42.9
PSO675G1020 Papaver somniferum HOM05D000045 ORTHO05D000067 4.2e-07 57.8 58 39.7
Rhsim01G0152900 Rhododendron simsii HOM05D000045 ORTHO05D000067 4.2e-07 57.8 61 39.3
Hund31201 Selenicereus undatus HOM05D000045 ORTHO05D000067 4.2e-07 57.8 60 41.7
EL10Ac5g11529 Beta vulgaris HOM05D000045 ORTHO05D000067 5.5e-07 57.4 47 46.8
CANSAT35G0973 Cannabis sativa HOM05D000045 ORTHO05D000067 5.5e-07 57.4 55 45.5
CANSAT54G1440 Cannabis sativa HOM05D000045 ORTHO05D000067 7.2e-07 57.0 60 41.7
ECA234G4595 Erigeron canadensis HOM05D000045 ORTHO05D000067 7.2e-07 57.0 46 50.0
ECA238G0146 Erigeron canadensis HOM05D000045 ORTHO05D000067 7.2e-07 57.0 46 50.0
ECA248G3891 Erigeron canadensis HOM05D000045 ORTHO05D000067 7.2e-07 57.0 34 64.7
Hund15474 Selenicereus undatus HOM05D000045 ORTHO05D000067 7.2e-07 57.0 45 51.1
TPR.G11300 Trifolium pratense HOM05D000045 ORTHO05D000067 7.2e-07 57.0 61 37.7
Ah.07g198010 Amaranthus hybridus HOM05D000045 ORTHO05D010054 9.4e-07 56.6 62 32.3
ECA240G2015 Erigeron canadensis HOM05D000045 ORTHO05D000067 9.4e-07 56.6 60 38.3
HanXRQChr03g0071931 Helianthus annuus HOM05D000385 ORTHO05D000269 9.4e-07 56.6 58 41.4
Atru.chr12.1212 Acer truncatum HOM05D000045 ORTHO05D000067 1.2e-06 56.2 55 40.0
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 1.2e-06 56.2 45 46.7
EL10Ac3g06371 Beta vulgaris HOM05D000045 ORTHO05D000067 1.6e-06 55.8 60 38.3
CANSAT11G1175 Cannabis sativa HOM05D000045 ORTHO05D000067 1.6e-06 55.8 55 43.6
CANSAT35G2014 Cannabis sativa HOM05D000045 ORTHO05D000067 1.6e-06 55.8 55 43.6
CANSAT54G0188 Cannabis sativa HOM05D000045 ORTHO05D000067 1.6e-06 55.8 55 43.6
CANSAT78G0460 Cannabis sativa HOM05D000045 ORTHO05D000067 1.6e-06 55.8 55 43.6
CANSAT78G0489 Cannabis sativa HOM05D000045 ORTHO05D000067 1.6e-06 55.8 55 43.6
ECA238G2966 Erigeron canadensis HOM05D000045 ORTHO05D000067 2.1e-06 55.5 46 45.7
ECA238G2976 Erigeron canadensis HOM05D001558 ORTHO05D003061 2.1e-06 55.5 61 39.3
ECA247G3391 Erigeron canadensis HOM05D000045 ORTHO05D000067 2.1e-06 55.5 46 45.7
Rhsim04G0161500 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.1e-06 55.5 42 52.4
Aqoxy4G01663 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 2.7e-06 55.1 54 48.1
arahy.Tifrunner.gnm1.ann1.U80MXJ Arachis hypogaea HOM05D000045 ORTHO05D000067 2.7e-06 55.1 41 51.2
ECA240G0947 Erigeron canadensis HOM05D000045 ORTHO05D000067 2.7e-06 55.1 46 45.7
Rhsim03G0160300 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.7e-06 55.1 45 46.7
Rhsim06G0101500 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.7e-06 55.1 45 46.7
RhsimUnG0161100 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.7e-06 55.1 45 46.7
RhsimUnG0178400 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.7e-06 55.1 45 46.7
Aqoxy5G02149 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 3.6e-06 54.7 54 48.1
Lj1g0004807 Lotus japonicus HOM05D000045 ORTHO05D000067 3.6e-06 54.7 48 43.8
Rhsim01G0090200 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.6e-06 54.7 43 48.8
RhsimUnG0017300 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.6e-06 54.7 45 48.9
TPR.G9165 Trifolium pratense HOM05D000045 ORTHO05D007522 3.6e-06 54.7 43 48.8
A08p18090 Brassica napus HOM05D000045 ORTHO05D000067 4.7e-06 54.3 50 42.0
BraA08t33761Z Brassica rapa HOM05D000045 ORTHO05D000067 4.7e-06 54.3 50 42.0
Ciclev10010226m.g Citrus clementina HOM05D000045 ORTHO05D000067 4.7e-06 54.3 45 46.7
Rhsim02G0163500 Rhododendron simsii HOM05D000045 ORTHO05D000067 4.7e-06 54.3 48 43.8
Rhsim02G0163600 Rhododendron simsii HOM05D000045 ORTHO05D000067 4.7e-06 54.3 48 43.8
TWI18G0222 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 4.7e-06 54.3 52 50.0
CANSAT11G0345 Cannabis sativa HOM05D000045 ORTHO05D000067 6.1e-06 53.9 55 41.8
CANSAT21G0671 Cannabis sativa HOM05D000045 ORTHO05D000067 6.1e-06 53.9 55 43.6
CANSAT35G0493 Cannabis sativa HOM05D000045 ORTHO05D000067 6.1e-06 53.9 41 51.2
Peaxi162Scf00148g00123 Petunia axillaris HOM05D000045 ORTHO05D010253 6.1e-06 53.9 59 35.6
Rhsim01G0208000 Rhododendron simsii HOM05D000045 ORTHO05D000067 6.1e-06 53.9 52 44.2
Rhsim02G0074600 Rhododendron simsii HOM05D000045 ORTHO05D003357 6.1e-06 53.9 58 43.1
Rhsim03G0019600 Rhododendron simsii HOM05D000045 ORTHO05D000067 6.1e-06 53.9 45 46.7
Rhsim09G0031000 Rhododendron simsii HOM05D000045 ORTHO05D012126 6.1e-06 53.9 45 46.7
TPR.G12781 Trifolium pratense HOM05D000045 ORTHO05D000067 6.1e-06 53.9 56 41.1
Aqoxy6G02606 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 8.0e-06 53.5 54 48.1
EL10Ac5g11416 Beta vulgaris HOM05D000045 ORTHO05D000067 8.0e-06 53.5 47 42.6
Lj4g0021877 Lotus japonicus HOM05D000045 ORTHO05D000067 8.0e-06 53.5 45 44.4
Medtr1g070355 Medicago truncatula HOM05D000045 ORTHO05D007522 8.0e-06 53.5 52 42.3
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 8.0e-06 53.5 45 46.7
Rhsim05G0138000 Rhododendron simsii HOM05D000045 ORTHO05D000067 8.0e-06 53.5 45 46.7
Rhsim08G0163900 Rhododendron simsii HOM05D000045 ORTHO05D000067 8.0e-06 53.5 62 37.1
Rhsim10G0168700 Rhododendron simsii HOM05D000045 ORTHO05D001086 8.0e-06 53.5 45 46.7
TWI74G1582 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 8.0e-06 53.5 45 44.4


User provided reference genes

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