Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0148811 Helianthus annuus HOM05D000175 ORTHO05D003429 6.6e-88 327.4 172 100.0
Lsat_1_v5_gn_6_97161 Lactuca sativa HOM05D000175 ORTHO05D003429 1.2e-25 120.6 164 47.0
ECA246G1183 Erigeron canadensis HOM05D000175 ORTHO05D003429 1.3e-19 100.5 60 75.0
Dinv27294 Davidia involucrata HOM05D000646 ORTHO05D000607 6.7e-16 88.2 197 36.5
Cc10_g12090 Coffea canephora HOM05D000175 ORTHO05D003429 9.7e-15 84.3 106 50.9
Migut.C01107 Erythranthe guttata HOM05D000175 ORTHO05D003429 2.8e-14 82.8 175 37.7
Lj7A343T67 Lonicera japonica HOM05D000175 ORTHO05D003429 4.1e-13 79.0 110 48.2
Phvul.009G126300 Phaseolus vulgaris HOM05D000175 ORTHO05D003429 2.6e-12 76.3 190 32.6
Manes.18G079100 Manihot esculenta HOM05D000175 ORTHO05D003429 1.0e-11 74.3 90 43.3
Dinv14636 Davidia involucrata HOM05D000175 ORTHO05D003429 1.3e-11 73.9 46 67.4
CSS0023247 Camellia sinensis var. sinensis HOM05D000175 ORTHO05D003429 1.7e-11 73.6 133 39.8
Thecc.08G128200 Theobroma cacao HOM05D000175 ORTHO05D003429 1.7e-11 73.6 65 47.7
Actinidia29475 Actinidia chinensis HOM05D000175 ORTHO05D003429 2.2e-11 73.2 194 33.0
PGR044G1188 Punica granatum HOM05D000175 ORTHO05D003429 2.2e-11 73.2 114 43.9
ClCG11G015840 Citrullus lanatus HOM05D000175 ORTHO05D003429 5.0e-11 72.0 188 31.9
Cpa.g.sc64.105 Carica papaya HOM05D000175 ORTHO05D003429 6.5e-11 71.6 97 43.3
Actinidia14219 Actinidia chinensis HOM05D000175 ORTHO05D003429 1.1e-10 70.9 46 58.7
Lalb_Chr08g0241371 Lupinus albus HOM05D000175 ORTHO05D003429 1.1e-10 70.9 50 56.0
Rhsim06G0101900 Rhododendron simsii HOM05D000175 ORTHO05D003429 1.1e-10 70.9 105 40.0
Psat5g086520 Pisum sativum HOM05D000175 ORTHO05D003429 1.4e-10 70.5 49 59.2
Cfa018574 Carpinus fangiana HOM05D000175 ORTHO05D003429 1.9e-10 70.1 105 39.0
Ca_16565_v3 Cicer arietinum L. HOM05D000175 ORTHO05D003429 1.9e-10 70.1 49 61.2
Haze_17506 Corylus avellana HOM05D000175 ORTHO05D003429 1.9e-10 70.1 102 38.2
Lj1g0025096 Lotus japonicus HOM05D000175 ORTHO05D003429 1.9e-10 70.1 103 40.8
VMungo1309G1645 Vigna mungo HOM05D000175 ORTHO05D003429 1.9e-10 70.1 72 52.8
SGA_v2.0_scaffold24G10449 Striga asiatica HOM05D000175 ORTHO05D003429 2.5e-10 69.7 104 47.1
Nitab4.5_0000322g0090 Nicotiana tabacum HOM05D000175 ORTHO05D003429 3.2e-10 69.3 103 40.8
CSS0046065 Camellia sinensis var. sinensis HOM05D000175 ORTHO05D003429 4.2e-10 68.9 117 41.9
Manes.02G165300 Manihot esculenta HOM05D000175 ORTHO05D003429 4.2e-10 68.9 92 42.4
Potri.002G081700 Populus trichocarpa HOM05D000175 ORTHO05D003429 4.2e-10 68.9 132 32.6
CiPaw.15G087500 Carya illinoinensis HOM05D000175 ORTHO05D003429 9.4e-10 67.8 115 38.3
Actinidia21309 Actinidia chinensis HOM05D000175 ORTHO05D003429 1.2e-09 67.4 126 36.5
Lj4C632T12 Lonicera japonica HOM05D000175 ORTHO05D003429 1.2e-09 67.4 42 69.0
TWI59G0278 Tripterygium wilfordii HOM05D000175 ORTHO05D003429 1.2e-09 67.4 48 54.2
BolC8t49046H Brassica oleracea HOM05D000175 ORTHO05D003429 1.6e-09 67.0 93 37.6
DCAR_014383 Daucus carota HOM05D000175 ORTHO05D003429 1.6e-09 67.0 178 32.0
Gohir.A05G236500 Gossypium hirsutum HOM05D000175 ORTHO05D003429 1.6e-09 67.0 93 45.2
Ciclev10003769m.g Citrus clementina HOM05D000175 ORTHO05D003429 2.1e-09 66.6 80 46.2
COL.COLO4_24723 Corchorus olitorius HOM05D000175 ORTHO05D003429 2.7e-09 66.2 102 35.3
Potri.005G179400 Populus trichocarpa HOM05D000175 ORTHO05D003429 2.7e-09 66.2 110 35.5
SalBow7G4600 Salvia bowleyana HOM05D000175 ORTHO05D003429 2.7e-09 66.2 151 35.8
TAR376G0063 Trochodendron aralioides HOM05D000175 ORTHO05D003429 2.7e-09 66.2 104 40.4
CSS0015810 Camellia sinensis var. sinensis HOM05D000175 ORTHO05D003429 3.6e-09 65.9 50 54.0
Sed0023031 Sechium edule HOM05D000175 ORTHO05D003429 3.6e-09 65.9 70 42.9
Atru.chr13.1506 Acer truncatum HOM05D000175 ORTHO05D003429 4.7e-09 65.5 41 61.0
CsaV3_4G028140 Cucumis sativus L. HOM05D000175 ORTHO05D003429 4.7e-09 65.5 107 40.2
Gorai.009G247400 Gossypium raimondii HOM05D000175 ORTHO05D003429 4.7e-09 65.5 93 44.1
Solyc06g060240.1 Solanum lycopersicum HOM05D000175 ORTHO05D003429 4.7e-09 65.5 109 37.6
MELO3C010495.2 Cucumis melo HOM05D000175 ORTHO05D003429 6.1e-09 65.1 115 39.1
Gohir.D05G238700 Gossypium hirsutum HOM05D000175 ORTHO05D003429 6.1e-09 65.1 93 44.1
Sabra02G0064000 Salix brachista HOM05D000175 ORTHO05D003429 8.0e-09 64.7 181 29.8
TWI60G1024 Tripterygium wilfordii HOM05D000175 ORTHO05D003429 8.0e-09 64.7 99 41.4
CAN.G145.10 Capsicum annuum HOM05D000175 ORTHO05D003429 1.0e-08 64.3 53 52.8
Hund26796 Selenicereus undatus HOM05D000175 ORTHO05D003429 1.0e-08 64.3 61 47.5
Sopen06g020360 Solanum pennellii HOM05D000175 ORTHO05D003429 1.0e-08 64.3 109 36.7
BraA08t35285Z Brassica rapa HOM05D000175 ORTHO05D003429 1.4e-08 63.9 93 35.5
Peaxi162Scf00051g01310 Petunia axillaris HOM05D000175 ORTHO05D003429 1.4e-08 63.9 110 39.1
FAN15G1612 Fragaria x ananassa HOM05D000175 ORTHO05D003429 1.8e-08 63.5 46 54.3
FAN15G2719 Fragaria x ananassa HOM05D000175 ORTHO05D003429 1.8e-08 63.5 46 54.3
QL09p033975 Quercus lobata HOM05D000175 ORTHO05D003429 1.8e-08 63.5 45 57.8
CARHR011230 Cardamine hirsuta HOM05D000175 ORTHO05D003429 2.3e-08 63.2 53 49.1
Eucgr.F04343 Eucalyptus grandis HOM05D000175 ORTHO05D003429 2.3e-08 63.2 46 47.8
Nitab4.5_0003719g0030 Nicotiana tabacum HOM05D000175 ORTHO05D003429 2.3e-08 63.2 103 35.9
AT1G11040 Arabidopsis thaliana HOM05D000175 ORTHO05D003429 3.0e-08 62.8 97 37.1
ClCG09G014010 Citrullus lanatus HOM05D000175 ORTHO05D003429 3.0e-08 62.8 86 41.9
Glyma.04G248600 Glycine max HOM05D000175 ORTHO05D003429 3.0e-08 62.8 164 26.8
A08p33690 Brassica napus HOM05D000175 ORTHO05D003429 3.9e-08 62.4 93 35.5
Cpa.g.c26548.4 Carica papaya HOM05D000175 ORTHO05D003429 3.9e-08 62.4 112 33.0
Eucgr.G00563 Eucalyptus grandis HOM05D000175 ORTHO05D003429 3.9e-08 62.4 104 39.4
Oeu040410.1 Olea europaea HOM05D000175 ORTHO05D003429 5.2e-08 62.0 106 41.5
CSS0007389 Camellia sinensis var. sinensis HOM05D000175 ORTHO05D003429 6.7e-08 61.6 57 49.1
Cc02_g22640 Coffea canephora HOM05D000175 ORTHO05D003429 6.7e-08 61.6 50 52.0
Gohir.A06G045800 Gossypium hirsutum HOM05D000175 ORTHO05D003429 6.7e-08 61.6 70 41.4
Gohir.D06G046300 Gossypium hirsutum HOM05D000175 ORTHO05D003429 6.7e-08 61.6 70 41.4
Gorai.010G051600 Gossypium raimondii HOM05D000175 ORTHO05D003429 6.7e-08 61.6 70 41.4
MD00G1029000 Malus domestica HOM05D000175 ORTHO05D003429 6.7e-08 61.6 50 52.0
Peaxi162Scf00152g01441 Petunia axillaris HOM05D000175 ORTHO05D003429 6.7e-08 61.6 96 38.5
TPR.G2058 Trifolium pratense HOM05D000175 ORTHO05D003429 6.7e-08 61.6 69 40.6
TWI34G1448 Tripterygium wilfordii HOM05D000175 ORTHO05D003429 6.7e-08 61.6 44 56.8
A06p07750 Brassica napus HOM05D000175 ORTHO05D003429 8.8e-08 61.2 53 49.1
BolC5t29674H Brassica oleracea HOM05D000175 ORTHO05D003429 8.8e-08 61.2 53 49.1
BraA06t23976Z Brassica rapa HOM05D000175 ORTHO05D003429 8.8e-08 61.2 53 49.1
Lalb_Chr18g0060931 Lupinus albus HOM05D000175 ORTHO05D003429 8.8e-08 61.2 84 34.5
MD15G1345600 Malus domestica HOM05D000175 ORTHO05D003429 8.8e-08 61.2 50 50.0
Medtr3g088140 Medicago truncatula HOM05D000175 ORTHO05D003429 8.8e-08 61.2 136 32.4
Nitab4.5_0001093g0010 Nicotiana tabacum HOM05D000175 ORTHO05D003429 8.8e-08 61.2 50 52.0
QL02p099217 Quercus lobata HOM05D000175 ORTHO05D003429 8.8e-08 61.2 50 48.0
RcHm_v2.0_Chr6g0296201 Rosa chinensis HOM05D000175 ORTHO05D003429 8.8e-08 61.2 46 52.2
C05p09340 Brassica napus HOM05D000175 ORTHO05D003429 1.1e-07 60.8 53 47.2
CANSAT25G3552 Cannabis sativa HOM05D000175 ORTHO05D003429 1.1e-07 60.8 40 57.5
Migut.N01044 Erythranthe guttata HOM05D000175 ORTHO05D003429 1.1e-07 60.8 61 39.3
Glyma.15G045800 Glycine max HOM05D000175 ORTHO05D003429 1.5e-07 60.5 50 46.0
Psat1g221160 Pisum sativum HOM05D000175 ORTHO05D003429 1.5e-07 60.5 105 33.3
AL1G22020 Arabidopsis lyrata HOM05D000175 ORTHO05D003429 2.0e-07 60.1 97 36.1
C08p14090 Brassica napus HOM05D000175 ORTHO05D003429 2.0e-07 60.1 143 30.8
CiPaw.05G048900 Carya illinoinensis HOM05D000175 ORTHO05D003429 2.0e-07 60.1 50 50.0
Thhalv10007652m.g Eutrema salsugineum HOM05D000175 ORTHO05D003429 2.0e-07 60.1 109 32.1
FvH4_2g27360 Fragaria vesca HOM05D000175 ORTHO05D003429 2.0e-07 60.1 105 37.1
FAN24G1051 Fragaria x ananassa HOM05D000175 ORTHO05D003429 2.0e-07 60.1 105 37.1
Potri.001G211800 Populus trichocarpa HOM05D000175 ORTHO05D003429 2.0e-07 60.1 102 38.2
arahy.Tifrunner.gnm1.ann1.1F8QU1 Arachis hypogaea HOM05D000175 ORTHO05D003429 2.6e-07 59.7 50 44.0
MELO3C014371.2 Cucumis melo HOM05D000175 ORTHO05D003429 2.6e-07 59.7 95 37.9
CsaV3_6G037470 Cucumis sativus L. HOM05D000175 ORTHO05D003429 2.6e-07 59.7 114 36.8
Sabra01G0163600 Salix brachista HOM05D000175 ORTHO05D003429 2.6e-07 59.7 113 36.3
Sp1g09730 Schrenkiella parvula HOM05D000175 ORTHO05D003429 2.6e-07 59.7 98 35.7
BcaNung04770 Brassica carinata HOM05D000175 ORTHO05D003429 3.3e-07 59.3 51 47.1
Carub.0001s1060 Capsella rubella HOM05D000175 ORTHO05D003429 3.3e-07 59.3 53 47.2
Ca_00069_v3 Cicer arietinum L. HOM05D000175 ORTHO05D003429 3.3e-07 59.3 114 32.5
RcHm_v2.0_Chr7g0221771 Rosa chinensis HOM05D000175 ORTHO05D003429 3.3e-07 59.3 48 45.8
Sed0009216 Sechium edule HOM05D000175 ORTHO05D003429 3.3e-07 59.3 88 38.6
Aqoxy6G00250 Aquilegia oxysepala HOM05D000175 ORTHO05D003429 4.4e-07 58.9 112 36.6
Cfa005506 Carpinus fangiana HOM05D000175 ORTHO05D003429 4.4e-07 58.9 88 39.8
FAN20G2750 Fragaria x ananassa HOM05D000175 ORTHO05D003429 4.4e-07 58.9 105 37.1
SalBow5G3005 Salvia bowleyana HOM05D000175 ORTHO05D003429 4.4e-07 58.9 94 36.2
Sc18g0004310 Simmondsia chinensis HOM05D000175 ORTHO05D003429 4.4e-07 58.9 108 30.6
EL10Ac6g14058 Beta vulgaris HOM05D000175 ORTHO05D003429 5.7e-07 58.5 118 32.2
Lj9A304T83 Lonicera japonica HOM05D000175 ORTHO05D003429 5.7e-07 58.5 69 47.8
PGSC0003DMG400017553 Solanum tuberosum HOM05D000175 ORTHO05D003429 5.7e-07 58.5 44 50.0
THA.LOC104809575 Tarenaya hassleriana HOM05D000175 ORTHO05D003429 5.7e-07 58.5 103 33.0
VMungo0540G1938 Vigna mungo HOM05D000175 ORTHO05D003429 5.7e-07 58.5 91 35.2
arahy.Tifrunner.gnm1.ann1.ZW6KD7 Arachis hypogaea HOM05D000175 ORTHO05D003429 7.4e-07 58.2 50 42.0
EL10Ac1g01038 Beta vulgaris HOM05D000175 ORTHO05D003429 7.4e-07 58.2 51 47.1
FvH4_5g29110 Fragaria vesca HOM05D000175 ORTHO05D003429 7.4e-07 58.2 48 43.8
FAN04G2895 Fragaria x ananassa HOM05D000175 ORTHO05D003429 7.4e-07 58.2 48 43.8
FAN08G1710 Fragaria x ananassa HOM05D000175 ORTHO05D003429 7.4e-07 58.2 48 43.8
FAN13G1408 Fragaria x ananassa HOM05D000175 ORTHO05D003429 7.4e-07 58.2 48 43.8
FAN18G3229 Fragaria x ananassa HOM05D000175 ORTHO05D003429 7.4e-07 58.2 48 43.8
Nitab4.5_0000001g0320 Nicotiana tabacum HOM05D000175 ORTHO05D003429 7.4e-07 58.2 49 49.0
Oeu000108.1 Olea europaea HOM05D000175 ORTHO05D003429 7.4e-07 58.2 50 46.0
Prupe.1G493700 Prunus persica HOM05D000175 ORTHO05D003429 9.7e-07 57.8 92 37.0
PGSC0003DMG400024427 Solanum tuberosum HOM05D000175 ORTHO05D003429 9.7e-07 57.8 50 50.0
CAN.G643.14 Capsicum annuum HOM05D000175 ORTHO05D003429 1.3e-06 57.4 162 28.4
AUR62014316 Chenopodium quinoa HOM05D000175 ORTHO05D003429 1.3e-06 57.4 47 46.8
AUR62019057 Chenopodium quinoa HOM05D000175 ORTHO05D003429 1.3e-06 57.4 47 46.8
Dinv19377 Davidia involucrata HOM05D000175 ORTHO05D003429 1.3e-06 57.4 42 52.4
Dinv24293 Davidia involucrata HOM05D000175 ORTHO05D003429 1.7e-06 57.0 108 34.3
Lj6g0012353 Lotus japonicus HOM05D000175 ORTHO05D003429 1.7e-06 57.0 110 34.5
Lalb_Chr20g0123521 Lupinus albus HOM05D000175 ORTHO05D003429 1.7e-06 57.0 67 37.3
PSO170G3276 Papaver somniferum HOM05D000175 ORTHO05D003429 2.2e-06 56.6 121 35.5
TAR625G1347 Trochodendron aralioides HOM05D000175 ORTHO05D003429 2.2e-06 56.6 34 64.7
Aa31LG1G3870 Aethionema arabicum HOM05D000175 ORTHO05D003429 2.8e-06 56.2 102 33.3
Nn5g28356 Nelumbo nucifera HOM05D000175 ORTHO05D003429 2.8e-06 56.2 93 35.5
PSO528G0206 Papaver somniferum HOM05D000175 ORTHO05D003429 2.8e-06 56.2 121 35.5
CiPaw.06G146500 Carya illinoinensis HOM05D000175 ORTHO05D003429 3.7e-06 55.8 58 43.1
Duzib052G0959 Durio zibethinus HOM05D000175 ORTHO05D003429 3.7e-06 55.8 49 44.9
CANSAT11G2457 Cannabis sativa HOM05D000175 ORTHO05D003429 4.8e-06 55.5 48 45.8
AL1G52200 Arabidopsis lyrata HOM05D000175 ORTHO05D003429 6.3e-06 55.1 98 38.8
MD15G1427300 Malus domestica HOM05D000175 ORTHO05D003429 6.3e-06 55.1 52 42.3
Medtr2g006890 Medicago truncatula HOM05D000175 ORTHO05D003429 6.3e-06 55.1 110 32.7
Sopen11g020010 Solanum pennellii HOM05D000175 ORTHO05D003429 6.3e-06 55.1 52 46.2
SGA_v2.0_scaffold110G31334 Striga asiatica HOM05D000175 ORTHO05D003429 6.3e-06 55.1 49 42.9
Thecc.02G088300 Theobroma cacao HOM05D000175 ORTHO05D003429 6.3e-06 55.1 90 38.9
MD08G1235600 Malus domestica HOM05D000175 ORTHO05D003429 8.2e-06 54.7 52 42.3
Prupe.1G571300 Prunus persica HOM05D000175 ORTHO05D003429 8.2e-06 54.7 50 44.0
unitig_26.g9554 Utricularia gibba HOM05D000175 ORTHO05D003429 8.2e-06 54.7 43 44.2


User provided reference genes

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