Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0147701 Helianthus annuus HOM05D000484 ORTHO05D000346 2.1e-34 148.3 67 100.0
Nitab4.5_0000193g0030 Nicotiana tabacum HOM05D000484 ORTHO05D000346 7.6e-08 60.1 37 67.6
Peaxi162Scf00084g00168 Petunia axillaris HOM05D000484 ORTHO05D000346 1.3e-07 59.3 37 67.6
Solyc11g013180.2 Solanum lycopersicum HOM05D000484 ORTHO05D000346 1.3e-07 59.3 37 67.6
Sopen11g008220 Solanum pennellii HOM05D000484 ORTHO05D000346 1.3e-07 59.3 37 67.6
EL10Ac1g00025 Beta vulgaris HOM05D000484 ORTHO05D000346 2.2e-07 58.5 38 65.8
HanXRQChr15g0483151 Helianthus annuus HOM05D000484 ORTHO05D000346 2.2e-07 58.5 37 67.6
CSS0049669 Camellia sinensis var. sinensis HOM05D000484 ORTHO05D000346 2.9e-07 58.2 37 64.9
AUR62004705 Chenopodium quinoa HOM05D000484 ORTHO05D000346 2.9e-07 58.2 38 63.2
Oeu017861.1 Olea europaea HOM05D000484 ORTHO05D000346 2.9e-07 58.2 38 63.2
MSTRG.25407 Avicennia marina HOM05D000484 ORTHO05D000346 3.8e-07 57.8 35 65.7
PGSC0003DMG400029029 Solanum tuberosum HOM05D000484 ORTHO05D000346 3.8e-07 57.8 37 64.9
TWI36G0476 Tripterygium wilfordii HOM05D000484 ORTHO05D000346 3.8e-07 57.8 37 67.6
Sabra02G0069400 Salix brachista HOM05D000484 ORTHO05D000346 4.9e-07 57.4 37 64.9
TAR381G0222 Trochodendron aralioides HOM05D000484 ORTHO05D000346 4.9e-07 57.4 37 64.9
Nitab4.5_0000494g0010 Nicotiana tabacum HOM05D000484 ORTHO05D000346 6.5e-07 57.0 37 64.9
Hund16828 Selenicereus undatus HOM05D000484 ORTHO05D000346 6.5e-07 57.0 38 63.2
Carub.0002s2463 Capsella rubella HOM05D000484 ORTHO05D000346 8.4e-07 56.6 37 64.9
CAN.G2.40 Capsicum annuum HOM05D000484 ORTHO05D000346 8.4e-07 56.6 37 64.9
Potri.005G172800 Populus trichocarpa HOM05D000484 ORTHO05D000346 8.4e-07 56.6 37 64.9
Sabra05G0130300 Salix brachista HOM05D000484 ORTHO05D000346 8.4e-07 56.6 37 64.9
TWI12G1417 Tripterygium wilfordii HOM05D000484 ORTHO05D000346 8.4e-07 56.6 37 64.9
AL2G37970 Arabidopsis lyrata HOM05D000484 ORTHO05D000346 1.1e-06 56.2 37 62.2
AT1G77740 Arabidopsis thaliana HOM05D000484 ORTHO05D000346 1.1e-06 56.2 37 62.2
AUR62023621 Chenopodium quinoa HOM05D000484 ORTHO05D000346 1.1e-06 56.2 36 63.9
Thhalv10018171m.g Eutrema salsugineum HOM05D000484 ORTHO05D000346 1.1e-06 56.2 37 62.2
ClCG03G009330 Citrullus lanatus HOM05D000484 ORTHO05D000346 1.4e-06 55.8 37 62.2
Lsat_1_v5_gn_6_109741 Lactuca sativa HOM05D000484 ORTHO05D000346 1.4e-06 55.8 37 64.9
Rhsim11G0065800 Rhododendron simsii HOM05D000484 ORTHO05D000346 1.4e-06 55.8 37 67.6
Dinv27374 Davidia involucrata HOM05D000484 ORTHO05D000346 1.9e-06 55.5 37 62.2
QL09p037055 Quercus lobata HOM05D000484 ORTHO05D000346 1.9e-06 55.5 37 62.2
Sp5g32910 Schrenkiella parvula HOM05D000484 ORTHO05D000346 1.9e-06 55.5 37 62.2
Sc01g0001460 Simmondsia chinensis HOM05D000484 ORTHO05D000346 1.9e-06 55.5 35 60.0
Atru.chr13.1334 Acer truncatum HOM05D000484 ORTHO05D000346 2.5e-06 55.1 37 59.5
Atru.chr13.1377 Acer truncatum HOM05D000484 ORTHO05D000346 2.5e-06 55.1 37 59.5
AT1G21980 Arabidopsis thaliana HOM05D000484 ORTHO05D000346 2.5e-06 55.1 37 62.2
arahy.Tifrunner.gnm1.ann1.90S4QE Arachis hypogaea HOM05D000484 ORTHO05D000346 2.5e-06 55.1 37 64.9
arahy.Tifrunner.gnm1.ann1.WMGI63 Arachis hypogaea HOM05D000484 ORTHO05D000346 2.5e-06 55.1 37 64.9
CARHR022340 Cardamine hirsuta HOM05D000484 ORTHO05D000346 2.5e-06 55.1 37 62.2
Potri.002G088100 Populus trichocarpa HOM05D000484 ORTHO05D000346 2.5e-06 55.1 37 62.2
SGA_v2.0_scaffold24G10499 Striga asiatica HOM05D000484 ORTHO05D000346 2.5e-06 55.1 42 54.8
THA.LOC104800182 Tarenaya hassleriana HOM05D000484 ORTHO05D000346 2.5e-06 55.1 37 62.2
TWI56G0700 Tripterygium wilfordii HOM05D000484 ORTHO05D000346 2.5e-06 55.1 37 64.9
BcaB05g25071 Brassica carinata HOM05D000484 ORTHO05D000346 3.2e-06 54.7 37 59.5
BcaC03g15766 Brassica carinata HOM05D000484 ORTHO05D000346 3.2e-06 54.7 37 59.5
BcaNung06312 Brassica carinata HOM05D000484 ORTHO05D000346 3.2e-06 54.7 37 59.5
A02p21780 Brassica napus HOM05D000484 ORTHO05D000346 3.2e-06 54.7 37 59.5
C02p35080 Brassica napus HOM05D000484 ORTHO05D000346 3.2e-06 54.7 37 59.5
BolC2t09522H Brassica oleracea HOM05D000484 ORTHO05D000346 3.2e-06 54.7 37 59.5
BraA02t07183Z Brassica rapa HOM05D000484 ORTHO05D000346 3.2e-06 54.7 37 59.5
CAN.G676.44 Capsicum annuum HOM05D000484 ORTHO05D000346 3.2e-06 54.7 56 44.6
CARHR071250 Cardamine hirsuta HOM05D000484 ORTHO05D000346 3.2e-06 54.7 35 62.9
MELO3C003057.2 Cucumis melo HOM05D000484 ORTHO05D000346 3.2e-06 54.7 37 59.5
CsaV3_5G023290 Cucumis sativus L. HOM05D000484 ORTHO05D000346 3.2e-06 54.7 37 59.5
ECA246G2405 Erigeron canadensis HOM05D000484 ORTHO05D000346 3.2e-06 54.7 37 64.9
Migut.N03315 Erythranthe guttata HOM05D000484 ORTHO05D000346 3.2e-06 54.7 35 65.7
Manes.02G159700 Manihot esculenta HOM05D000484 ORTHO05D000346 3.2e-06 54.7 37 64.9
AL1G35380 Arabidopsis lyrata HOM05D000484 ORTHO05D000346 4.2e-06 54.3 37 62.2
CSS0011267 Camellia sinensis var. sinensis HOM05D000484 ORTHO05D000346 4.2e-06 54.3 54 46.3
Haze_25404 Corylus avellana HOM05D000484 ORTHO05D000346 4.2e-06 54.3 37 62.2
Migut.C01181 Erythranthe guttata HOM05D000484 ORTHO05D000346 4.2e-06 54.3 37 64.9
Glyma.04G206100 Glycine max HOM05D000484 ORTHO05D000346 4.2e-06 54.3 37 62.2
SGA_v2.0_scaffold3320G54313 Striga asiatica HOM05D000484 ORTHO05D000346 4.2e-06 54.3 39 53.8
Dinv07923 Davidia involucrata HOM05D000484 ORTHO05D000346 5.5e-06 53.9 35 65.7
Lj7C311T2 Lonicera japonica HOM05D000484 ORTHO05D000346 5.5e-06 53.9 37 64.9
Oeu043784.2 Olea europaea HOM05D000484 ORTHO05D000346 5.5e-06 53.9 37 59.5
Oeu050260.1 Olea europaea HOM05D000484 ORTHO05D000346 5.5e-06 53.9 37 54.1
TAR625G1390 Trochodendron aralioides HOM05D000484 ORTHO05D000346 5.5e-06 53.9 36 63.9
TAR727G0001 Trochodendron aralioides HOM05D000484 ORTHO05D000346 5.5e-06 53.9 36 63.9
BcaC07g39132 Brassica carinata HOM05D000484 ORTHO05D000346 7.1e-06 53.5 37 56.8
A08p28700 Brassica napus HOM05D000484 ORTHO05D000346 7.1e-06 53.5 37 56.8
C08p21220 Brassica napus HOM05D000484 ORTHO05D000346 7.1e-06 53.5 37 56.8
BolC8t49763H Brassica oleracea HOM05D000484 ORTHO05D000346 7.1e-06 53.5 37 56.8
BraA08t34800Z Brassica rapa HOM05D000484 ORTHO05D000346 7.1e-06 53.5 37 56.8
COL.COLO4_05059 Corchorus olitorius HOM05D000484 ORTHO05D000346 7.1e-06 53.5 37 62.2
Manes.18G073500 Manihot esculenta HOM05D000484 ORTHO05D000346 7.1e-06 53.5 37 64.9
Oeu030033.1 Olea europaea HOM05D000484 ORTHO05D000346 7.1e-06 53.5 37 59.5
RcHm_v2.0_Chr6g0294851 Rosa chinensis HOM05D000484 ORTHO05D000346 7.1e-06 53.5 37 59.5
FvH4_2g26240 Fragaria vesca HOM05D000484 ORTHO05D000346 9.3e-06 53.1 37 59.5
FAN15G3241 Fragaria x ananassa HOM05D000484 ORTHO05D000346 9.3e-06 53.1 37 59.5
FAN20G0147 Fragaria x ananassa HOM05D000484 ORTHO05D000346 9.3e-06 53.1 37 59.5
FAN24G2952 Fragaria x ananassa HOM05D000484 ORTHO05D000346 9.3e-06 53.1 37 59.5
HanXRQChr05g0150561 Helianthus annuus HOM05D000484 ORTHO05D000346 9.3e-06 53.1 35 62.9
MD08G1170300 Malus domestica HOM05D000484 ORTHO05D000346 9.3e-06 53.1 37 59.5
MD15G1357100 Malus domestica HOM05D000484 ORTHO05D000346 9.3e-06 53.1 37 59.5
Prupe.1G504100 Prunus persica HOM05D000484 ORTHO05D000346 9.3e-06 53.1 37 59.5
Sp1g19500 Schrenkiella parvula HOM05D000484 ORTHO05D000346 9.3e-06 53.1 37 59.5
Sc23g0000870 Simmondsia chinensis HOM05D000484 ORTHO05D000346 9.3e-06 53.1 35 62.9
SGA_v2.0_scaffold52G19014 Striga asiatica HOM05D000484 ORTHO05D000346 9.3e-06 53.1 37 56.8
Thecc.08G118300 Theobroma cacao HOM05D000484 ORTHO05D000346 9.3e-06 53.1 37 62.2


User provided reference genes

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