Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 7.6e-96 354.0 199 100.0
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 1.2e-85 320.1 199 89.4
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 1.2e-72 276.9 199 78.4
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 2.5e-67 259.2 184 78.8
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 1.3e-66 256.9 199 73.9
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 1.2e-64 250.4 199 63.3
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 5.9e-64 248.1 199 62.3
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 5.0e-63 245.0 199 61.3
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 9.4e-62 240.7 199 60.8
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 2.1e-61 239.6 199 59.8
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 1.0e-60 237.3 198 59.1
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 1.4e-60 236.9 200 62.5
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 5.1e-60 235.0 199 58.3
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 6.7e-60 234.6 201 59.7
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 2.0e-59 233.0 199 58.8
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 5.7e-59 231.5 198 60.6
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 1.7e-58 229.9 200 59.0
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 2.2e-58 229.6 199 57.8
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.2e-58 229.6 200 58.0
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 3.7e-58 228.8 200 57.5
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 4.8e-58 228.4 200 57.5
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 1.8e-57 226.5 199 58.8
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 3.1e-57 225.7 200 59.0
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 5.3e-57 224.9 199 60.8
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 2.0e-56 223.0 199 56.8
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 3.4e-56 222.2 198 56.6
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 3.4e-56 222.2 199 56.3
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 1.0e-55 220.7 200 55.5
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 1.0e-55 220.7 200 55.5
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 1.0e-55 220.7 200 55.5
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 1.0e-55 220.7 184 60.3
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 3.8e-55 218.8 199 57.8
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 3.8e-55 218.8 207 56.5
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 5.0e-55 218.4 200 56.0
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 6.5e-55 218.0 184 66.8
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 1.1e-54 217.2 197 54.3
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.9e-54 216.5 198 55.1
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 7.2e-54 214.5 199 52.8
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 9.4e-54 214.2 198 55.1
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 9.4e-54 214.2 200 56.5
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 1.2e-53 213.8 198 56.1
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 1.2e-53 213.8 199 56.8
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 6.1e-53 211.5 205 53.2
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 1.8e-52 209.9 199 55.8
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 1.8e-52 209.9 207 54.6
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 3.0e-52 209.1 170 62.9
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 5.2e-52 208.4 197 52.8
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 6.7e-52 208.0 205 52.2
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.5e-51 206.8 184 55.4
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 2.6e-51 206.1 184 56.5
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.6e-51 206.1 195 53.3
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 5.7e-51 204.9 197 54.8
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 1.3e-50 203.8 196 50.5
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 1.3e-50 203.8 206 54.4
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 3.7e-50 202.2 192 58.3
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 6.3e-50 201.4 185 54.1
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 6.3e-50 201.4 190 53.7
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 8.2e-50 201.1 184 58.2
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 8.2e-50 201.1 198 52.0
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 2.4e-49 199.5 199 50.8
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 2.4e-49 199.5 200 52.5
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.1e-49 199.1 199 53.8
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 4.1e-49 198.7 200 51.5
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 5.3e-49 198.4 185 53.5
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 7.0e-49 198.0 200 53.0
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 9.1e-49 197.6 238 45.8
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 1.2e-48 197.2 184 55.4
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 1.2e-48 197.2 200 53.0
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 2.0e-48 196.4 199 50.3
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 4.5e-48 195.3 197 51.8
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.0e-47 194.1 197 48.2
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 2.2e-47 193.0 196 50.5
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 5.0e-47 191.8 196 49.0
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 1.2e-45 187.2 197 49.7
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 2.1e-45 186.4 197 48.2
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 2.7e-45 186.0 201 49.3
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 3.6e-45 185.7 197 49.7
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 3.6e-45 185.7 197 49.2
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 3.6e-45 185.7 181 51.9
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 3.0e-44 182.6 232 44.4
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 4.0e-44 182.2 184 51.6
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 5.2e-44 181.8 173 55.5
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 3.3e-43 179.1 197 46.2
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 4.4e-43 178.7 197 46.7
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 5.7e-43 178.3 197 47.2
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 4.8e-42 175.3 197 46.2
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 8.2e-42 174.5 197 46.7
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 4.1e-41 172.2 174 58.0
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 4.1e-41 172.2 155 54.2
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.7e-40 169.5 184 47.3
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 4.2e-38 162.2 207 44.4
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 5.5e-38 161.8 174 50.6
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 3.0e-36 156.0 193 43.5
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 4.4e-35 152.1 146 54.8
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 5.4e-33 145.2 184 42.9
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 1.2e-32 144.1 186 45.2
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 3.5e-32 142.5 162 47.5
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 6.5e-31 138.3 166 47.6
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 8.5e-31 137.9 155 45.8
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 4.2e-30 135.6 137 49.6
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 9.5e-30 134.4 192 39.1
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 1.8e-28 130.2 187 38.5
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 1.2e-27 127.5 146 47.3
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 4.4e-27 125.6 129 49.6
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 2.8e-26 122.9 133 51.9
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 3.7e-26 122.5 155 44.5
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 7.0e-25 118.2 145 46.9
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 2.0e-24 116.7 84 67.9
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 8.6e-23 111.3 87 64.4
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.5e-22 110.5 151 43.7
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 3.6e-21 105.9 87 64.4
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 4.7e-21 105.5 185 31.9
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 6.1e-21 105.1 190 31.1
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 1.3e-18 97.4 84 57.1
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 4.9e-18 95.5 110 44.5
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 4.1e-17 92.4 154 33.8
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 1.6e-16 90.5 90 51.1
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 8.6e-15 84.7 163 34.4
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 4.1e-09 65.9 59 52.5
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 1.2e-08 64.3 48 56.2
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 6.0e-08 62.0 47 55.3
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 6.0e-08 62.0 43 67.4
MD08G1245200 Malus domestica HOM05D006640 ORTHO05D008078 1.3e-07 60.8 38 71.1
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 3.9e-07 59.3 45 57.8
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 6.6e-07 58.5 96 36.5


User provided reference genes

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