Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0147281 Helianthus annuus HOM05D007308 ORTHO05D009157 7.9e-126 453.8 224 100.0
ECA232G3668 Erigeron canadensis HOM05D007308 ORTHO05D009157 4.4e-92 341.7 205 82.9
Lsat_1_v5_gn_3_53161 Lactuca sativa HOM05D007308 ORTHO05D009157 7.0e-82 307.8 224 72.8
Hma1.2p1_0457F.1_g156910 Hydrangea macrophylla HOM05D007308 ORTHO05D009157 1.6e-73 280.0 186 72.0
Dinv08592 Davidia involucrata HOM05D007308 ORTHO05D009157 3.0e-72 275.8 191 70.7
Rhsim09G0141500 Rhododendron simsii HOM05D007308 ORTHO05D009157 1.1e-71 273.9 188 70.7
TAR623G1715 Trochodendron aralioides HOM05D007308 ORTHO05D009157 8.1e-70 267.7 207 62.3
vmacro10315 Vaccinium macrocarpon HOM05D007308 ORTHO05D009157 8.1e-70 267.7 183 72.7
Prupe.2G071800 Prunus persica HOM05D007308 ORTHO05D009157 3.4e-68 262.3 188 66.0
MSTRG.27555 Avicennia marina HOM05D007308 ORTHO05D009157 7.5e-68 261.2 222 62.2
CSS0004692 Camellia sinensis var. sinensis HOM05D007308 ORTHO05D009157 7.5e-68 261.2 183 68.9
GSVIVG01034647001 Vitis vinifera HOM05D007308 ORTHO05D009157 7.5e-68 261.2 185 67.0
TWI15G0952 Tripterygium wilfordii HOM05D007308 ORTHO05D009157 1.3e-67 260.4 182 67.0
QL04p047115 Quercus lobata HOM05D007308 ORTHO05D009157 2.4e-66 256.1 179 67.6
CiPaw.13G043100 Carya illinoinensis HOM05D007308 ORTHO05D009157 2.7e-65 252.7 184 67.4
Ciclev10016517m.g Citrus clementina HOM05D007308 ORTHO05D009157 3.5e-65 252.3 197 63.5
Cc02_g09470 Coffea canephora HOM05D007308 ORTHO05D009157 6.0e-65 251.5 209 58.9
Potri.010G241700 Populus trichocarpa HOM05D007308 ORTHO05D009157 6.0e-65 251.5 184 66.3
Eucgr.J00279 Eucalyptus grandis HOM05D007308 ORTHO05D009157 1.0e-64 250.8 206 64.1
Gohir.A13G009300 Gossypium hirsutum HOM05D007308 ORTHO05D009157 1.0e-64 250.8 171 67.3
Gorai.013G010700 Gossypium raimondii HOM05D007308 ORTHO05D009157 1.0e-64 250.8 206 58.7
Gohir.D13G010000 Gossypium hirsutum HOM05D007308 ORTHO05D009157 1.3e-64 250.4 206 58.7
Nn2g14273 Nelumbo nucifera HOM05D007308 ORTHO05D009157 1.3e-64 250.4 206 59.2
CANSAT56G1109 Cannabis sativa HOM05D007308 ORTHO05D009157 1.7e-64 250.0 173 68.8
Sabra10G0189200 Salix brachista HOM05D000139 ORTHO05D000103 2.3e-64 249.6 211 61.1
Migut.F00856 Erythranthe guttata HOM05D007308 ORTHO05D009157 3.9e-64 248.8 184 65.8
Aqoxy1G00692 Aquilegia oxysepala HOM05D007308 ORTHO05D009157 6.6e-64 248.1 172 68.6
Sc20g0001110 Simmondsia chinensis HOM05D007308 ORTHO05D009157 6.6e-64 248.1 173 68.8
MBI17_g22148_MAGBIO Magnolia biondii HOM05D007308 ORTHO05D009157 1.9e-63 246.5 173 69.4
Thecc.10G116800 Theobroma cacao HOM05D007308 ORTHO05D009157 2.5e-63 246.1 189 63.0
Peaxi162Scf00725g00524 Petunia axillaris HOM05D007308 ORTHO05D009157 4.3e-63 245.4 182 67.6
MD07G1062000 Malus domestica HOM05D007308 ORTHO05D009157 7.3e-63 244.6 184 65.8
Lalb_Chr02g0150981 Lupinus albus HOM05D007308 ORTHO05D009157 9.5e-63 244.2 175 67.4
unitig_32.g11899 Utricularia gibba HOM05D007308 ORTHO05D009157 9.5e-63 244.2 175 67.4
Duzib106G1839 Durio zibethinus HOM05D007308 ORTHO05D009157 1.2e-62 243.8 217 59.4
Glyma.20G194000 Glycine max HOM05D007308 ORTHO05D009157 1.2e-62 243.8 176 65.3
Medtr1g090630 Medicago truncatula HOM05D007308 ORTHO05D009157 2.8e-62 242.7 176 68.2
PSO339G2601 Papaver somniferum HOM05D007308 ORTHO05D009157 4.7e-62 241.9 174 66.1
PGSC0003DMG400001980 Solanum tuberosum HOM05D007308 ORTHO05D009157 4.7e-62 241.9 186 65.6
Sabra08G0011300 Salix brachista HOM05D007308 ORTHO05D009157 6.2e-62 241.5 168 68.5
Nitab4.5_0001047g0020 Nicotiana tabacum HOM05D007308 ORTHO05D009157 1.1e-61 240.7 178 66.9
Lj5g0023307 Lotus japonicus HOM05D007308 ORTHO05D009157 1.4e-61 240.4 176 67.6
AL6G14490 Arabidopsis lyrata HOM05D007308 ORTHO05D009157 3.1e-61 239.2 186 62.9
C03p02230 Brassica napus HOM05D007308 ORTHO05D009157 3.1e-61 239.2 172 67.4
BolC3t12774H Brassica oleracea HOM05D007308 ORTHO05D009157 3.1e-61 239.2 172 67.4
PGR044G1814 Punica granatum HOM05D007308 ORTHO05D009157 3.1e-61 239.2 211 56.9
Haze_03470 Corylus avellana HOM05D007308 ORTHO05D009157 4.0e-61 238.8 211 57.3
BcaB01g05916 Brassica carinata HOM05D007308 ORTHO05D009157 5.2e-61 238.4 172 67.4
Glyma.10G196200 Glycine max HOM05D007308 ORTHO05D009157 5.2e-61 238.4 176 64.8
Lj3C924T9 Lonicera japonica HOM05D007308 ORTHO05D009157 6.8e-61 238.0 215 58.1
PSO384G3587 Papaver somniferum HOM05D007308 ORTHO05D009157 6.8e-61 238.0 174 64.4
Carub.0006s0371 Capsella rubella HOM05D007308 ORTHO05D009157 1.2e-60 237.3 165 69.1
Sp6g38000 Schrenkiella parvula HOM05D007308 ORTHO05D009157 2.0e-60 236.5 164 68.9
THA.LOC104816471 Tarenaya hassleriana HOM05D007308 ORTHO05D009157 2.0e-60 236.5 218 57.3
BcaC06g32190 Brassica carinata HOM05D007308 ORTHO05D009157 3.4e-60 235.7 171 65.5
CsaV3_5G035250 Cucumis sativus L. HOM05D007308 ORTHO05D009157 3.4e-60 235.7 169 65.7
VMungo0720G2616 Vigna mungo HOM05D007308 ORTHO05D009157 3.4e-60 235.7 173 64.7
Hund06794 Selenicereus undatus HOM05D007308 ORTHO05D009157 4.4e-60 235.3 174 64.9
A10p31380 Brassica napus HOM05D007308 ORTHO05D009157 5.8e-60 235.0 166 66.9
ClCG05G021890 Citrullus lanatus HOM05D007308 ORTHO05D009157 7.6e-60 234.6 169 65.1
Thhalv10014751m.g Eutrema salsugineum HOM05D007308 ORTHO05D009157 7.6e-60 234.6 164 69.5
SalBow3G3836 Salvia bowleyana HOM05D007308 ORTHO05D009157 7.6e-60 234.6 161 70.2
AT5G04830 Arabidopsis thaliana HOM05D007308 ORTHO05D009157 1.3e-59 233.8 171 66.1
A03p01870 Brassica napus HOM05D007308 ORTHO05D009157 1.3e-59 233.8 170 67.1
C09p72050 Brassica napus HOM05D007308 ORTHO05D009157 1.3e-59 233.8 171 64.9
BraA03t09557Z Brassica rapa HOM05D007308 ORTHO05D009157 1.3e-59 233.8 170 67.1
arahy.Tifrunner.gnm1.ann1.I1QH9V Arachis hypogaea HOM05D007308 ORTHO05D009157 1.7e-59 233.4 215 56.7
HPP92_005473 Vanilla planifolia HOM05D007308 ORTHO05D009157 1.7e-59 233.4 176 63.1
Sed0004755 Sechium edule HOM05D007308 ORTHO05D009157 2.9e-59 232.6 169 64.5
arahy.Tifrunner.gnm1.ann1.ZU0NEU Arachis hypogaea HOM05D007308 ORTHO05D009157 3.7e-59 232.3 197 58.9
Phvul.007G138800 Phaseolus vulgaris HOM05D007308 ORTHO05D009157 3.7e-59 232.3 176 63.6
BolC9t59950H Brassica oleracea HOM05D007308 ORTHO05D009157 8.4e-59 231.1 179 62.6
PGR044G1810 Punica granatum HOM05D007308 ORTHO05D009157 1.1e-58 230.7 210 53.3
BraA10t45184Z Brassica rapa HOM05D007308 ORTHO05D009157 1.4e-58 230.3 174 63.8
Aa31LG11G5650 Aethionema arabicum HOM05D007308 ORTHO05D009157 1.9e-58 229.9 183 62.3
SGA_v2.0_scaffold272G46352 Striga asiatica HOM05D007308 ORTHO05D009157 4.1e-58 228.8 246 50.8
Lalb_Chr21g0312841 Lupinus albus HOM05D007308 ORTHO05D009157 9.2e-58 227.6 156 69.2
Sed0002245 Sechium edule HOM05D007308 ORTHO05D009157 2.1e-57 226.5 174 63.8
CDE02G0914 Ceratophyllum demersum HOM05D007308 ORTHO05D009157 2.7e-57 226.1 188 55.9
CARHR208450 Cardamine hirsuta HOM05D007308 ORTHO05D009157 1.7e-56 223.4 185 59.5
CSS0017788 Camellia sinensis var. sinensis HOM05D007308 ORTHO05D009157 3.9e-56 222.2 183 61.7
ATR0772G202 Amborella trichopoda HOM05D007308 ORTHO05D009157 2.1e-54 216.5 173 60.7
Zm00001eb362380 Zea mays HOM05D007308 ORTHO05D009157 2.0e-52 209.9 156 62.2
Solyc11g006505.1 Solanum lycopersicum HOM05D007308 ORTHO05D009157 4.4e-52 208.8 135 74.8
Sopen11g002410 Solanum pennellii HOM05D007308 ORTHO05D009157 5.8e-52 208.4 135 74.1
Os01g0965900 Oryza sativa ssp. japonica HOM05D007308 ORTHO05D009157 1.2e-49 200.7 155 61.9
AagrBONN_evm.TU.Sc2ySwM_344.2550 Anthoceros agrestis HOM05D007308 ORTHO05D009157 1.6e-49 200.3 212 50.9
Mapoly0021s0141 Marchantia polymorpha HOM05D007308 ORTHO05D009157 1.3e-48 197.2 156 59.6
RcHm_v2.0_Chr1g0331851 Rosa chinensis HOM05D007308 ORTHO05D009157 2.5e-47 193.0 152 64.5
CiPaw.14G034600 Carya illinoinensis HOM05D007308 ORTHO05D009157 3.6e-46 189.1 195 52.8
MELO3C012339.2 Cucumis melo HOM05D007308 ORTHO05D009157 1.4e-45 187.2 141 63.1
Pp3c19_15880 Physcomitrium patens HOM05D007308 ORTHO05D009157 1.4e-45 187.2 185 50.8
Pp3c14_20980 Physcomitrium patens HOM05D007308 ORTHO05D009157 2.4e-45 186.4 157 56.7
Actinidia34730 Actinidia chinensis HOM05D000139 ORTHO05D000103 1.2e-44 184.1 140 65.0
SEGI_14438 Sequoiadendron giganteum HOM05D007308 ORTHO05D009157 2.2e-43 179.9 164 55.5
SMO143G0271 Selaginella moellendorffii HOM05D007308 ORTHO05D009157 3.8e-43 179.1 159 57.2
Manes.10G060700 Manihot esculenta HOM05D007308 ORTHO05D009157 9.3e-42 174.5 120 65.8
SEGI_29808 Sequoiadendron giganteum HOM05D007308 ORTHO05D009157 1.9e-39 166.8 184 48.9
SMO265G0003 Selaginella moellendorffii HOM05D007308 ORTHO05D009157 1.8e-37 160.2 154 55.2
Pp3c1_28520 Physcomitrium patens HOM05D007308 ORTHO05D009157 2.7e-33 146.4 119 59.7
BcaNung05151 Brassica carinata HOM05D007308 ORTHO05D009157 5.6e-31 138.7 186 45.7
Atru.BG.262.p Acer truncatum HOM05D007308 ORTHO05D009157 1.7e-27 127.1 80 76.2
Potri.008G017701 Populus trichocarpa HOM05D007308 ORTHO05D009157 1.4e-26 124.0 83 65.1
CBR_g30213 Chara braunii HOM05D007308 ORTHO05D009157 2.5e-18 96.7 151 37.7
Pp3c2_31450 Physcomitrium patens HOM05D007308 ORTHO05D009157 1.3e-16 90.9 89 49.4
Actinidia27055 Actinidia chinensis HOM05D007308 ORTHO05D009157 5.0e-11 72.4 85 48.2
PGSC0003DMG400007605 Solanum tuberosum HOM05D000011 ORTHO05D000018 2.1e-09 67.0 43 65.1
Cfa027317 Carpinus fangiana HOM05D007308 ORTHO05D009157 8.8e-08 61.6 117 30.8
Sopen11g002430 Solanum pennellii HOM05D000011 ORTHO05D000018 2.0e-07 60.5 45 57.8
PGSC0003DMG402001979 Solanum tuberosum HOM05D000011 ORTHO05D000018 7.4e-07 58.5 41 58.5


User provided reference genes

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