Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0146461 Helianthus annuus HOM05D003411 ORTHO05D003914 1.4e-34 149.1 74 100.0
HanXRQChr07g0185571 Helianthus annuus HOM05D003411 ORTHO05D003914 6.4e-24 113.6 54 96.3
Lsat_1_v5_gn_6_59580 Lactuca sativa HOM05D003411 ORTHO05D003914 4.9e-16 87.4 54 74.1
ECA233G4116 Erigeron canadensis HOM05D003411 ORTHO05D003914 3.5e-14 81.3 53 77.4
TAR636G0144 Trochodendron aralioides HOM05D003411 ORTHO05D003914 6.0e-14 80.5 56 66.1
CSS0031323 Camellia sinensis var. sinensis HOM05D003411 ORTHO05D003914 3.9e-13 77.8 55 65.5
HanXRQChr02g0058461 Helianthus annuus HOM05D003411 ORTHO05D003914 3.9e-13 77.8 38 86.8
CiPaw.02G063100 Carya illinoinensis HOM05D003411 ORTHO05D003914 8.7e-13 76.6 54 61.1
MD04G1018500 Malus domestica HOM05D003411 ORTHO05D003914 1.5e-12 75.9 54 64.8
CSS0027208 Camellia sinensis var. sinensis HOM05D003411 ORTHO05D003914 3.3e-12 74.7 57 61.4
Peaxi162Scf00286g01031 Petunia axillaris HOM05D003411 ORTHO05D003914 3.3e-12 74.7 54 68.5
Cpa.g.sc157.38 Carica papaya HOM05D003411 ORTHO05D003914 5.6e-12 73.9 54 61.1
CiPaw.01G115300 Carya illinoinensis HOM05D003411 ORTHO05D003914 5.6e-12 73.9 54 59.3
Haze_11665 Corylus avellana HOM05D003411 ORTHO05D003914 1.3e-11 72.8 56 57.1
Migut.N00427 Erythranthe guttata HOM05D003411 ORTHO05D003914 1.3e-11 72.8 54 64.8
Prupe.1G167300 Prunus persica HOM05D003411 ORTHO05D003914 1.3e-11 72.8 54 61.1
SGA_v2.0_scaffold19G08787 Striga asiatica HOM05D003411 ORTHO05D003914 1.3e-11 72.8 54 64.8
Dinv18405 Davidia involucrata HOM05D003411 ORTHO05D003914 4.8e-11 70.9 49 65.3
SalBow3G1551 Salvia bowleyana HOM05D003411 ORTHO05D003914 4.8e-11 70.9 54 61.1
TWI53G0146 Tripterygium wilfordii HOM05D003411 ORTHO05D003914 4.8e-11 70.9 54 61.1
arahy.Tifrunner.gnm1.ann1.E7M6AK Arachis hypogaea HOM05D003411 ORTHO05D003914 6.2e-11 70.5 58 58.6
Cfa008639 Carpinus fangiana HOM05D003411 ORTHO05D003914 6.2e-11 70.5 54 57.4
vmacro00433 Vaccinium macrocarpon HOM05D003411 ORTHO05D003914 6.2e-11 70.5 54 63.0
Medtr3g084410 Medicago truncatula HOM05D003411 ORTHO05D003914 8.1e-11 70.1 46 63.0
QL07p010164 Quercus lobata HOM05D003411 ORTHO05D003914 1.8e-10 68.9 56 60.7
DCAR_026664 Daucus carota HOM05D003411 ORTHO05D003914 2.4e-10 68.6 33 84.8
CSS0017016 Camellia sinensis var. sinensis HOM05D003411 ORTHO05D003914 4.0e-10 67.8 47 61.7
Ciclev10004848m.g Citrus clementina HOM05D003411 ORTHO05D003914 4.0e-10 67.8 54 59.3
Sabra17G0053800 Salix brachista HOM05D003411 ORTHO05D003914 4.0e-10 67.8 33 81.8
Atru.chr4.1551 Acer truncatum HOM05D003411 ORTHO05D003914 5.3e-10 67.4 54 61.1
arahy.Tifrunner.gnm1.ann1.EMW6AM Arachis hypogaea HOM05D003411 ORTHO05D003914 5.3e-10 67.4 58 56.9
Glyma.18G002800 Glycine max HOM05D003411 ORTHO05D003914 6.9e-10 67.0 45 62.2
Potri.017G060000 Populus trichocarpa HOM05D003411 ORTHO05D003914 6.9e-10 67.0 33 78.8
MSTRG.9788 Avicennia marina HOM05D003411 ORTHO05D003914 9.0e-10 66.6 55 61.8
COL.COLO4_05435 Corchorus olitorius HOM05D003411 ORTHO05D003914 1.5e-09 65.9 31 83.9
Manes.01G003200 Manihot esculenta HOM05D003411 ORTHO05D003914 1.5e-09 65.9 33 78.8
Potri.001G321600 Populus trichocarpa HOM05D003411 ORTHO05D003914 1.5e-09 65.9 33 78.8
QL02p010094 Quercus lobata HOM05D003411 ORTHO05D003914 1.5e-09 65.9 65 50.8
Sopen09g035330 Solanum pennellii HOM05D003411 ORTHO05D003914 1.5e-09 65.9 54 61.1
TPR.G28943 Trifolium pratense HOM05D003411 ORTHO05D003914 2.0e-09 65.5 34 76.5
GSVIVG01021049001 Vitis vinifera HOM05D003411 ORTHO05D003914 2.0e-09 65.5 32 78.1
Aa31LG9G3320 Aethionema arabicum HOM05D003411 ORTHO05D003914 2.6e-09 65.1 35 77.1
CAN.G1155.14 Capsicum annuum HOM05D003411 ORTHO05D003914 2.6e-09 65.1 39 69.2
Actinidia35836 Actinidia chinensis HOM05D003411 ORTHO05D003914 3.4e-09 64.7 33 78.8
EL10Ac3g07442 Beta vulgaris HOM05D003411 ORTHO05D003914 3.4e-09 64.7 58 58.6
Ca_16422_v3 Cicer arietinum L. HOM05D003411 ORTHO05D003914 3.4e-09 64.7 47 61.7
PSO017G4415 Papaver somniferum HOM05D003411 ORTHO05D003914 3.4e-09 64.7 48 62.5
PGR083G0313 Punica granatum HOM05D003411 ORTHO05D003914 3.4e-09 64.7 43 62.8
Solyc09g092430.3 Solanum lycopersicum HOM05D003411 ORTHO05D003914 3.4e-09 64.7 55 61.8
Ah.13g077880 Amaranthus hybridus HOM05D003411 ORTHO05D003914 4.5e-09 64.3 58 58.6
Nn1g08155 Nelumbo nucifera HOM05D003411 ORTHO05D003914 4.5e-09 64.3 47 57.4
CANSAT78G0444 Cannabis sativa HOM05D003411 ORTHO05D003914 5.8e-09 63.9 36 72.2
Glyma.11G254300 Glycine max HOM05D003411 ORTHO05D003914 5.8e-09 63.9 46 63.0
PSO063G6832 Papaver somniferum HOM05D003411 ORTHO05D003914 5.8e-09 63.9 48 60.4
Phvul.001G265900 Phaseolus vulgaris HOM05D003411 ORTHO05D003914 5.8e-09 63.9 33 78.8
Hund19016 Selenicereus undatus HOM05D003411 ORTHO05D003914 5.8e-09 63.9 58 58.6
PGSC0003DMG400020582 Solanum tuberosum HOM05D003411 ORTHO05D003914 5.8e-09 63.9 54 61.1
Lj6g0005715 Lotus japonicus HOM05D003411 ORTHO05D003914 7.6e-09 63.5 46 58.7
PSO017G0142 Papaver somniferum HOM05D003411 ORTHO05D003914 7.6e-09 63.5 50 60.0
Psat5g099520 Pisum sativum HOM05D003411 ORTHO05D003914 7.6e-09 63.5 36 72.2
Thecc.04G193400 Theobroma cacao HOM05D003411 ORTHO05D003914 7.6e-09 63.5 31 83.9
arahy.Tifrunner.gnm1.ann1.GXY8DM Arachis hypogaea HOM05D003411 ORTHO05D003914 1.0e-08 63.2 41 68.3
Carub.0007s2838 Capsella rubella HOM05D003411 ORTHO05D003914 1.3e-08 62.8 54 57.4
MBI07_g08879_MAGBIO Magnolia biondii HOM05D003411 ORTHO05D003914 1.3e-08 62.8 40 67.5
THA.LOC104804791 Tarenaya hassleriana HOM05D003411 ORTHO05D003914 1.3e-08 62.8 54 53.7
MELO3C021162.2 Cucumis melo HOM05D003411 ORTHO05D003914 1.7e-08 62.4 43 65.1
unitig_62.g23161 Utricularia gibba HOM05D003411 ORTHO05D003914 1.7e-08 62.4 37 67.6
CsaV3_6G001060 Cucumis sativus L. HOM05D003411 ORTHO05D003914 2.2e-08 62.0 40 62.5
FvH4_4g13170 Fragaria vesca HOM05D003411 ORTHO05D003914 2.2e-08 62.0 59 50.8
FAN12G0475 Fragaria x ananassa HOM05D003411 ORTHO05D003914 2.2e-08 62.0 59 50.8
RcHm_v2.0_Chr4g0413261 Rosa chinensis HOM05D003411 ORTHO05D003914 2.2e-08 62.0 58 51.7
SHI06459 Sapria himalayana HOM05D003411 ORTHO05D003914 2.2e-08 62.0 31 77.4
AT4G14040 Arabidopsis thaliana HOM05D003411 ORTHO05D003914 2.9e-08 61.6 54 61.1
BcaB02g08638 Brassica carinata HOM05D003411 ORTHO05D003914 2.9e-08 61.6 54 63.0
Eucgr.H02650 Eucalyptus grandis HOM05D003411 ORTHO05D003914 2.9e-08 61.6 41 56.1
PSO063G3966 Papaver somniferum HOM05D003411 ORTHO05D003914 2.9e-08 61.6 48 56.2
THA.LOC104822225 Tarenaya hassleriana HOM05D003411 ORTHO05D003914 2.9e-08 61.6 55 50.9
VMungo1383G0705 Vigna mungo HOM05D003411 ORTHO05D003914 2.9e-08 61.6 33 75.8
Cc03_g09400 Coffea canephora HOM05D003411 ORTHO05D003914 3.8e-08 61.2 34 76.5
FAN07G1736 Fragaria x ananassa HOM05D003411 ORTHO05D003914 4.9e-08 60.8 59 49.2
FAN17G0403 Fragaria x ananassa HOM05D003411 ORTHO05D003914 4.9e-08 60.8 59 49.2
ATR0602G172 Amborella trichopoda HOM05D003411 ORTHO05D003914 6.5e-08 60.5 38 63.2
AL7G42400 Arabidopsis lyrata HOM05D003411 ORTHO05D003914 6.5e-08 60.5 55 61.8
CANSAT78G1476 Cannabis sativa HOM05D003411 ORTHO05D003914 6.5e-08 60.5 44 61.4
AUR62018543 Chenopodium quinoa HOM05D003411 ORTHO05D003914 6.5e-08 60.5 39 69.2
AUR62020875 Chenopodium quinoa HOM05D003411 ORTHO05D003914 6.5e-08 60.5 39 69.2
AL7G42390 Arabidopsis lyrata HOM05D003411 ORTHO05D003914 8.4e-08 60.1 54 59.3
A04p08110 Brassica napus HOM05D003411 ORTHO05D003914 8.4e-08 60.1 38 68.4
BraA04t16500Z Brassica rapa HOM05D003411 ORTHO05D003914 8.4e-08 60.1 38 68.4
CARHR220050 Cardamine hirsuta HOM05D003411 ORTHO05D003914 8.4e-08 60.1 54 55.6
Sp7g11830 Schrenkiella parvula HOM05D003411 ORTHO05D003914 8.4e-08 60.1 38 68.4
Thhalv10002510m.g Eutrema salsugineum HOM05D003411 ORTHO05D003914 1.1e-07 59.7 37 70.3
Gohir.D10G137200 Gossypium hirsutum HOM05D003411 ORTHO05D003914 1.1e-07 59.7 37 70.3
Gorai.011G152400 Gossypium raimondii HOM05D003411 ORTHO05D003914 1.1e-07 59.7 37 70.3
AagrBONN_evm.TU.Sc2ySwM_228.5065 Anthoceros agrestis HOM05D003411 ORTHO05D003914 1.4e-07 59.3 32 75.0
CDE07G1304 Ceratophyllum demersum HOM05D003411 ORTHO05D003914 1.4e-07 59.3 50 52.0
BolC8t48088H Brassica oleracea HOM05D003411 ORTHO05D003914 1.9e-07 58.9 31 80.6
BcaB04g18107 Brassica carinata HOM05D003411 ORTHO05D003914 2.5e-07 58.5 54 59.3
Thhalv10024991m.g Eutrema salsugineum HOM05D003411 ORTHO05D003914 2.5e-07 58.5 38 65.8
BcaB04g18108 Brassica carinata HOM05D003411 ORTHO05D003914 3.2e-07 58.2 54 53.7
BcaC07g37715 Brassica carinata HOM05D003411 ORTHO05D003914 3.2e-07 58.2 54 53.7
A08p10270 Brassica napus HOM05D003411 ORTHO05D003914 3.2e-07 58.2 54 57.4
A08p10280 Brassica napus HOM05D003411 ORTHO05D003914 3.2e-07 58.2 54 53.7
BolC8t48092H Brassica oleracea HOM05D003411 ORTHO05D003914 3.2e-07 58.2 54 57.4
BolC8t48094H Brassica oleracea HOM05D003411 ORTHO05D003914 3.2e-07 58.2 54 53.7
BraA08t33024Z Brassica rapa HOM05D003411 ORTHO05D003914 3.2e-07 58.2 54 53.7
BraA08t33025Z Brassica rapa HOM05D003411 ORTHO05D003914 3.2e-07 58.2 54 57.4
ClCG06G003230 Citrullus lanatus HOM05D003411 ORTHO05D003914 3.2e-07 58.2 33 69.7
Sed0020137 Sechium edule HOM05D003411 ORTHO05D003914 3.2e-07 58.2 33 69.7
Sc07g0006160 Simmondsia chinensis HOM05D003411 ORTHO05D003914 3.2e-07 58.2 57 52.6
AT3G23800 Arabidopsis thaliana HOM05D003411 ORTHO05D003914 4.2e-07 57.8 41 61.0
BcaB02g08636 Brassica carinata HOM05D003411 ORTHO05D003914 4.2e-07 57.8 54 57.4
BcaC02g09366 Brassica carinata HOM05D003411 ORTHO05D003914 4.2e-07 57.8 38 63.2
BcaC02g09367 Brassica carinata HOM05D003411 ORTHO05D003914 4.2e-07 57.8 34 70.6
BcaC07g37697 Brassica carinata HOM05D003411 ORTHO05D003914 4.2e-07 57.8 31 77.4
A08p10260 Brassica napus HOM05D003411 ORTHO05D003914 4.2e-07 57.8 31 77.4
C04p41770 Brassica napus HOM05D003411 ORTHO05D003914 4.2e-07 57.8 34 70.6
BolC4t25757H Brassica oleracea HOM05D003411 ORTHO05D003914 4.2e-07 57.8 38 63.2
BolC4t25759H Brassica oleracea HOM05D003411 ORTHO05D003914 4.2e-07 57.8 34 70.6
BraA08t33023Z Brassica rapa HOM05D003411 ORTHO05D003914 4.2e-07 57.8 31 77.4
CARHR099780 Cardamine hirsuta HOM05D003411 ORTHO05D003914 4.2e-07 57.8 43 58.1
Duzib212G0817 Durio zibethinus HOM05D003411 ORTHO05D003914 4.2e-07 57.8 32 75.0
Gohir.A10G128900 Gossypium hirsutum HOM05D003411 ORTHO05D003914 4.2e-07 57.8 37 70.3
Sp7g11850 Schrenkiella parvula HOM05D003411 ORTHO05D003914 4.2e-07 57.8 32 75.0
Thhalv10025040m.g Eutrema salsugineum HOM05D003411 ORTHO05D003914 5.5e-07 57.4 54 51.9
Gohir.A02G018300 Gossypium hirsutum HOM05D003411 ORTHO05D003914 5.5e-07 57.4 33 72.7
Aqoxy2G03916 Aquilegia oxysepala HOM05D003411 ORTHO05D003914 7.1e-07 57.0 33 69.7
BcaB04g18106 Brassica carinata HOM05D003411 ORTHO05D003914 7.1e-07 57.0 31 77.4
Gohir.D02G021500 Gossypium hirsutum HOM05D003411 ORTHO05D003914 7.1e-07 57.0 32 75.0
Gorai.005G027000 Gossypium raimondii HOM05D003411 ORTHO05D003914 7.1e-07 57.0 32 75.0
AT4G14030 Arabidopsis thaliana HOM05D003411 ORTHO05D003914 9.3e-07 56.6 55 58.2
C04p41760 Brassica napus HOM05D003411 ORTHO05D003914 9.3e-07 56.6 38 63.2
Gohir.A02G018500 Gossypium hirsutum HOM05D003411 ORTHO05D003914 9.3e-07 56.6 32 71.9
Gohir.D02G021700 Gossypium hirsutum HOM05D003411 ORTHO05D003914 9.3e-07 56.6 32 75.0
Gohir.D02G021800 Gossypium hirsutum HOM05D003411 ORTHO05D003914 9.3e-07 56.6 32 71.9
Gorai.005G027200 Gossypium raimondii HOM05D003411 ORTHO05D003914 9.3e-07 56.6 32 75.0
Gorai.005G027300 Gossypium raimondii HOM05D003411 ORTHO05D003914 9.3e-07 56.6 32 71.9
Lalb_Chr23g0278281 Lupinus albus HOM05D003411 ORTHO05D003914 9.3e-07 56.6 32 68.8
A04p08100 Brassica napus HOM05D003411 ORTHO05D003914 1.2e-06 56.2 38 60.5
BraA04t16498Z Brassica rapa HOM05D003411 ORTHO05D003914 1.2e-06 56.2 38 60.5
SalBow8G4879 Salvia bowleyana HOM05D003411 ORTHO05D003914 1.6e-06 55.8 41 58.5
BcaC06g35570 Brassica carinata HOM05D003411 ORTHO05D003914 2.1e-06 55.5 38 63.2
C07p13410 Brassica napus HOM05D003411 ORTHO05D003914 2.1e-06 55.5 38 63.2
BolC7t41836H Brassica oleracea HOM05D003411 ORTHO05D003914 2.1e-06 55.5 38 63.2
Carub.0007s2839 Capsella rubella HOM05D003411 ORTHO05D003914 2.1e-06 55.5 55 58.2
SMO230G0057 Selaginella moellendorffii HOM05D003411 ORTHO05D003914 2.1e-06 55.5 31 74.2
A07p08590 Brassica napus HOM05D003411 ORTHO05D003914 3.5e-06 54.7 38 63.2
BcaB06g26541 Brassica carinata HOM05D003411 ORTHO05D003914 4.6e-06 54.3 31 71.0
Carub.0003s2410 Capsella rubella HOM05D003411 ORTHO05D003914 4.6e-06 54.3 37 59.5
BraA07t28648Z Brassica rapa HOM05D003411 ORTHO05D003914 6.0e-06 53.9 38 60.5
Glyma.08G108000 Glycine max HOM05D003411 ORTHO05D003914 7.9e-06 53.5 33 63.6


User provided reference genes

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