Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0145041 Helianthus annuus HOM05D002664 ORTHO05D002974 1.6e-74 282.7 145 100.0
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 2.4e-30 136.0 88 81.8
HanXRQChr05g0142601 Helianthus annuus HOM05D002664 ORTHO05D002974 3.2e-19 99.0 51 94.1
ECA233G1117 Erigeron canadensis HOM05D002664 ORTHO05D002974 4.2e-19 98.6 142 38.0
Nitab4.5_0001267g0070 Nicotiana tabacum HOM05D002664 ORTHO05D002974 1.0e-17 94.0 99 50.5
Lsat_1_v5_gn_8_10521 Lactuca sativa HOM05D002664 ORTHO05D002974 3.9e-17 92.0 91 53.8
Nitab4.5_0001358g0010 Nicotiana tabacum HOM05D002664 ORTHO05D002974 6.7e-17 91.3 99 48.5
Manes.14G037800 Manihot esculenta HOM05D002664 ORTHO05D002974 9.7e-16 87.4 86 47.7
AT5G51330 Arabidopsis thaliana HOM05D002664 ORTHO05D002974 2.8e-15 85.9 79 51.9
BcaC04g20689 Brassica carinata HOM05D002664 ORTHO05D002974 2.8e-15 85.9 91 51.6
C09p40580 Brassica napus HOM05D002664 ORTHO05D002974 2.8e-15 85.9 91 51.6
SGA_v2.0_scaffold2G01230 Striga asiatica HOM05D002664 ORTHO05D003901 3.7e-15 85.5 114 39.5
Oeu031401.1 Olea europaea HOM05D002664 ORTHO05D002974 8.2e-15 84.3 102 50.0
SalBow7G2446 Salvia bowleyana HOM05D002664 ORTHO05D002974 1.1e-14 84.0 102 46.1
Carub.0008s1135 Capsella rubella HOM05D002664 ORTHO05D002974 1.8e-14 83.2 78 51.3
Aa31LG3G7820 Aethionema arabicum HOM05D002664 ORTHO05D002974 3.1e-14 82.4 91 48.4
AL8G25590 Arabidopsis lyrata HOM05D002664 ORTHO05D002974 3.1e-14 82.4 79 50.6
PGR042G3927 Punica granatum HOM05D002664 ORTHO05D002974 3.1e-14 82.4 91 50.5
Cc02_g04490 Coffea canephora HOM05D002664 ORTHO05D002974 4.1e-14 82.0 129 41.9
A02p12360 Brassica napus HOM05D002664 ORTHO05D002974 6.9e-14 81.3 91 46.2
BraA02t06302Z Brassica rapa HOM05D002664 ORTHO05D002974 6.9e-14 81.3 91 46.2
THA.LOC104811530 Tarenaya hassleriana HOM05D002664 ORTHO05D002974 1.2e-13 80.5 105 41.0
BcaB08g35490 Brassica carinata HOM05D002664 ORTHO05D002974 1.5e-13 80.1 79 53.2
CARHR264080 Cardamine hirsuta HOM05D002664 ORTHO05D002974 1.5e-13 80.1 91 44.0
Actinidia24983 Actinidia chinensis HOM05D002664 ORTHO05D002974 2.0e-13 79.7 154 37.0
Cfa008177 Carpinus fangiana HOM05D002664 ORTHO05D002974 2.6e-13 79.3 78 47.4
Sp6g13520 Schrenkiella parvula HOM05D002664 ORTHO05D002974 2.6e-13 79.3 91 45.1
Thhalv10015731m.g Eutrema salsugineum HOM05D002664 ORTHO05D002974 3.4e-13 79.0 91 42.9
Rhsim09G0190200 Rhododendron simsii HOM05D002664 ORTHO05D002974 3.4e-13 79.0 141 38.3
CiPaw.03G093900 Carya illinoinensis HOM05D002664 ORTHO05D002974 4.5e-13 78.6 79 44.3
CsaV3_5G001230 Cucumis sativus L. HOM05D002664 ORTHO05D002974 5.9e-13 78.2 83 44.6
Ciclev10006805m.g Citrus clementina HOM05D002664 ORTHO05D002974 7.7e-13 77.8 109 37.6
A10p09070 Brassica napus HOM05D002664 ORTHO05D002974 1.7e-12 76.6 92 50.0
BraA10t42992Z Brassica rapa HOM05D002664 ORTHO05D002974 1.7e-12 76.6 92 50.0
Ca_23768_v3 Cicer arietinum L. HOM05D002664 ORTHO05D002974 1.7e-12 76.6 79 46.8
Peaxi162Scf00271g00835 Petunia axillaris HOM05D002664 ORTHO05D002974 1.7e-12 76.6 62 56.5
BcaB05g24009 Brassica carinata HOM05D002664 ORTHO05D002974 2.2e-12 76.3 91 42.9
ClCG01G001100 Citrullus lanatus HOM05D002664 ORTHO05D002974 2.2e-12 76.3 83 43.4
DCAR_009450 Daucus carota HOM05D002664 ORTHO05D002974 2.2e-12 76.3 82 47.6
TAR375G0876 Trochodendron aralioides HOM05D002664 ORTHO05D002974 2.2e-12 76.3 104 43.3
Ca_23528_v3 Cicer arietinum L. HOM05D002664 ORTHO05D002974 3.8e-12 75.5 79 45.6
QL09p019762 Quercus lobata HOM05D002664 ORTHO05D002974 3.8e-12 75.5 72 50.0
Sed0022620 Sechium edule HOM05D002664 ORTHO05D002974 3.8e-12 75.5 77 45.5
Atru.chr1.849 Acer truncatum HOM05D002664 ORTHO05D002974 5.0e-12 75.1 88 40.9
Actinidia13593 Actinidia chinensis HOM05D002664 ORTHO05D002974 5.0e-12 75.1 70 51.4
Rhsim03G0164400 Rhododendron simsii HOM05D002664 ORTHO05D002974 5.0e-12 75.1 70 51.4
Sed0006781 Sechium edule HOM05D002664 ORTHO05D002974 5.0e-12 75.1 87 44.8
TPR.G12244 Trifolium pratense HOM05D002664 ORTHO05D002974 5.0e-12 75.1 79 45.6
Migut.F00502 Erythranthe guttata HOM05D002664 ORTHO05D002974 6.5e-12 74.7 119 37.0
Eucgr.A02906 Eucalyptus grandis HOM05D002664 ORTHO05D002974 6.5e-12 74.7 77 45.5
Potri.003G106800 Populus trichocarpa HOM05D002664 ORTHO05D002974 6.5e-12 74.7 86 44.2
TPR.G19287 Trifolium pratense HOM05D002664 ORTHO05D002974 6.5e-12 74.7 79 44.3
CAN.G485.5 Capsicum annuum HOM05D002664 ORTHO05D002974 8.5e-12 74.3 97 46.4
Glyma.08G232300 Glycine max HOM05D002664 ORTHO05D002974 8.5e-12 74.3 78 44.9
Nn1g00921 Nelumbo nucifera HOM05D002664 ORTHO05D002974 1.1e-11 73.9 82 42.7
PGSC0003DMG400018845 Solanum tuberosum HOM05D002664 ORTHO05D002974 1.1e-11 73.9 86 45.3
MELO3C005824.2 Cucumis melo HOM05D002664 ORTHO05D002974 1.4e-11 73.6 102 38.2
Duzib205G0977 Durio zibethinus HOM05D002664 ORTHO05D002974 1.4e-11 73.6 71 47.9
Gorai.001G049900 Gossypium raimondii HOM05D002664 ORTHO05D002974 1.4e-11 73.6 82 43.9
Gohir.A07G042500 Gossypium hirsutum HOM05D002664 ORTHO05D002974 1.9e-11 73.2 79 44.3
MD01G1180700 Malus domestica HOM05D002664 ORTHO05D002974 1.9e-11 73.2 79 44.3
PSO017G5981 Papaver somniferum HOM05D002664 ORTHO05D002974 1.9e-11 73.2 89 41.6
Gohir.D07G046800 Gossypium hirsutum HOM05D002664 ORTHO05D002974 2.5e-11 72.8 79 44.3
MD07G1251100 Malus domestica HOM05D002664 ORTHO05D002974 2.5e-11 72.8 79 44.3
vmacro09917 Vaccinium macrocarpon HOM05D002664 ORTHO05D002974 2.5e-11 72.8 70 48.6
Lalb_Chr19g0133131 Lupinus albus HOM05D002664 ORTHO05D002974 3.2e-11 72.4 79 44.3
Sc09g0006820 Simmondsia chinensis HOM05D002664 ORTHO05D002974 3.2e-11 72.4 78 47.4
Medtr8g446550 Medicago truncatula HOM05D002664 ORTHO05D002974 4.2e-11 72.0 79 43.0
Lj3g0010591 Lotus japonicus HOM05D002664 ORTHO05D002974 5.5e-11 71.6 79 44.3
BcaC03g14612 Brassica carinata HOM05D002664 ORTHO05D002974 7.2e-11 71.2 89 43.8
C02p20490 Brassica napus HOM05D002664 ORTHO05D002974 7.2e-11 71.2 89 43.8
BolC2t08185H Brassica oleracea HOM05D002664 ORTHO05D002974 7.2e-11 71.2 89 43.8
PSO063G6851 Papaver somniferum HOM05D002664 ORTHO05D002974 7.2e-11 71.2 79 45.6
Sabra03G0073600 Salix brachista HOM05D002664 ORTHO05D002974 7.2e-11 71.2 86 41.9
Glyma.15G217800 Glycine max HOM05D002664 ORTHO05D002974 9.4e-11 70.9 78 42.3
Phvul.011G181300 Phaseolus vulgaris HOM05D002664 ORTHO05D002974 9.4e-11 70.9 72 45.8
unitig_37.g11928 Utricularia gibba HOM05D002664 ORTHO05D002974 1.2e-10 70.5 91 40.7
Solyc03g093370.2 Solanum lycopersicum HOM05D002664 ORTHO05D002974 1.6e-10 70.1 55 56.4
Sopen03g024180 Solanum pennellii HOM05D002664 ORTHO05D002974 2.1e-10 69.7 66 50.0
TPR.G9425 Trifolium pratense HOM05D002664 ORTHO05D002974 2.1e-10 69.7 79 43.0
TWI74G1217 Tripterygium wilfordii HOM05D002664 ORTHO05D002974 2.1e-10 69.7 74 45.9
Dinv06579 Davidia involucrata HOM05D002664 ORTHO05D002974 2.7e-10 69.3 70 44.3
Thecc.03G151700 Theobroma cacao HOM05D002664 ORTHO05D002974 2.7e-10 69.3 79 41.8
VMungo1127G2068 Vigna mungo HOM05D002664 ORTHO05D002974 3.6e-10 68.9 72 44.4
COL.COLO4_14079 Corchorus olitorius HOM05D002664 ORTHO05D002974 4.6e-10 68.6 70 47.1
Duzib084G0247 Durio zibethinus HOM05D002664 ORTHO05D002974 4.6e-10 68.6 60 50.0
AUR62014362 Chenopodium quinoa HOM05D002664 ORTHO05D002974 6.1e-10 68.2 73 43.8
AUR62019103 Chenopodium quinoa HOM05D002664 ORTHO05D002974 6.1e-10 68.2 73 42.5
unitig_52.g17768 Utricularia gibba HOM05D002664 ORTHO05D002974 6.1e-10 68.2 67 50.7
vmacro06820 Vaccinium macrocarpon HOM05D002664 ORTHO05D002974 1.0e-09 67.4 127 34.6
Prupe.2G274700 Prunus persica HOM05D002664 ORTHO05D002974 1.8e-09 66.6 79 43.0
Hund17273 Selenicereus undatus HOM05D002664 ORTHO05D002974 1.8e-09 66.6 97 40.2
unitig_92.g28270 Utricularia gibba HOM05D002664 ORTHO05D002974 2.3e-09 66.2 69 40.6
GSVIVG01003609001 Vitis vinifera HOM05D002664 ORTHO05D002974 2.3e-09 66.2 51 52.9
SalBow7G1646 Salvia bowleyana HOM05D002664 ORTHO05D002974 3.0e-09 65.9 43 58.1
GSVIVG01002693001 Vitis vinifera HOM05D002664 ORTHO05D002974 3.0e-09 65.9 51 54.9
Aqoxy7G01390 Aquilegia oxysepala HOM05D002664 ORTHO05D002974 3.9e-09 65.5 82 42.7
Potri.001G126901 Populus trichocarpa HOM05D002664 ORTHO05D002974 3.9e-09 65.5 94 36.2
FAN01G1141 Fragaria x ananassa HOM05D002664 ORTHO05D002974 5.1e-09 65.1 56 46.4
FAN06G0230 Fragaria x ananassa HOM05D002664 ORTHO05D002974 5.1e-09 65.1 56 46.4
FAN06G3235 Fragaria x ananassa HOM05D002664 ORTHO05D002974 5.1e-09 65.1 56 46.4
CSS0031825 Camellia sinensis var. sinensis HOM05D002664 ORTHO05D002974 6.7e-09 64.7 43 58.1
CSS0043630 Camellia sinensis var. sinensis HOM05D002664 ORTHO05D002974 6.7e-09 64.7 43 58.1
Ciclev10007049m.g Citrus clementina HOM05D002664 ORTHO05D002974 6.7e-09 64.7 43 55.8
Eucgr.I00014 Eucalyptus grandis HOM05D002664 ORTHO05D002974 6.7e-09 64.7 59 49.2
Aqoxy7G00809 Aquilegia oxysepala HOM05D002664 ORTHO05D002974 1.1e-08 63.9 106 40.6
FvH4_7g27150 Fragaria vesca HOM05D002664 ORTHO05D002974 1.1e-08 63.9 56 46.4
Sabra01G0097900 Salix brachista HOM05D002664 ORTHO05D002974 1.1e-08 63.9 44 54.5
SHI14034 Sapria himalayana HOM05D002664 ORTHO05D002974 1.1e-08 63.9 106 34.0
EL10Ac1g00495 Beta vulgaris HOM05D002664 ORTHO05D002974 2.5e-08 62.8 95 35.8
Hma1.2p1_1132F.1_g260130 Hydrangea macrophylla HOM05D002664 ORTHO05D002974 2.5e-08 62.8 62 43.5
PSO063G5620 Papaver somniferum HOM05D002664 ORTHO05D002974 2.5e-08 62.8 69 43.5
Ah.02g111390 Amaranthus hybridus HOM05D002664 ORTHO05D002974 3.3e-08 62.4 82 36.6
RcHm_v2.0_Chr1g0373991 Rosa chinensis HOM05D002664 ORTHO05D002974 3.3e-08 62.4 54 46.3
AUR62019104 Chenopodium quinoa HOM05D002664 ORTHO05D002974 4.3e-08 62.0 89 42.7
Medtr7g105920 Medicago truncatula HOM05D002664 ORTHO05D002974 5.7e-08 61.6 106 35.8
RcHm_v2.0_Chr2g0120161 Rosa chinensis HOM05D002664 ORTHO05D002974 5.7e-08 61.6 55 50.9
EL10Ac1g00496 Beta vulgaris HOM05D002664 ORTHO05D002974 7.4e-08 61.2 89 39.3
Psat4g186400 Pisum sativum HOM05D002664 ORTHO05D002974 1.3e-07 60.5 69 44.9
FAN26G3299 Fragaria x ananassa HOM05D002664 ORTHO05D002974 1.7e-07 60.1 84 41.7
FAN19G1176 Fragaria x ananassa HOM05D002664 ORTHO05D002974 2.8e-07 59.3 70 40.0
arahy.Tifrunner.gnm1.ann1.E8CH2M Arachis hypogaea HOM05D002664 ORTHO05D002974 4.8e-07 58.5 78 35.9
Cc02_g06550 Coffea canephora HOM05D002664 ORTHO05D002974 4.8e-07 58.5 72 44.4
FvH4_1g24020 Fragaria vesca HOM05D002664 ORTHO05D002974 4.8e-07 58.5 77 39.0
FAN19G0372 Fragaria x ananassa HOM05D002664 ORTHO05D002974 4.8e-07 58.5 77 39.0
FAN26G0702 Fragaria x ananassa HOM05D002664 ORTHO05D002974 4.8e-07 58.5 77 39.0
FAN28G1456 Fragaria x ananassa HOM05D002664 ORTHO05D002974 4.8e-07 58.5 77 39.0
FAN23G0756 Fragaria x ananassa HOM05D002664 ORTHO05D002974 6.3e-07 58.2 77 39.0
Manes.13G153000 Manihot esculenta HOM05D002664 ORTHO05D002974 1.1e-06 57.4 92 39.1
arahy.Tifrunner.gnm1.ann1.JQ7YTV Arachis hypogaea HOM05D002664 ORTHO05D002974 1.4e-06 57.0 74 37.8
GSVIVG01000236001 Vitis vinifera HOM05D002664 ORTHO05D002974 1.4e-06 57.0 72 41.7
TAR628G1416 Trochodendron aralioides HOM05D002664 ORTHO05D002974 1.8e-06 56.6 38 57.9
Zm00001eb218470 Zea mays HOM05D002664 ORTHO05D002974 1.8e-06 56.6 71 38.0
HPP92_003655 Vanilla planifolia HOM05D002664 ORTHO05D002974 3.1e-06 55.8 72 43.1
SMO361G0366 Selaginella moellendorffii HOM05D002664 ORTHO05D002974 5.3e-06 55.1 69 40.6
Ah.05g171410 Amaranthus hybridus HOM05D002664 ORTHO05D002974 6.9e-06 54.7 29 69.0
HPP92_024614 Vanilla planifolia HOM05D002664 ORTHO05D002974 6.9e-06 54.7 30 63.3
Os03g0650400 Oryza sativa ssp. japonica HOM05D002664 ORTHO05D002974 9.1e-06 54.3 77 35.1


User provided reference genes

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