Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 2.0e-86 322.4 163 100.0
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 3.3e-49 198.7 163 65.0
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 8.8e-42 174.1 136 68.4
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 3.7e-40 168.7 149 60.4
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 2.4e-23 112.8 149 44.3
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 4.1e-23 112.1 166 41.6
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 9.2e-23 110.9 149 44.3
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 2.7e-22 109.4 151 47.0
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 2.7e-22 109.4 149 43.6
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 3.5e-22 109.0 162 42.6
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 7.8e-22 107.8 135 46.7
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.3e-21 107.1 170 41.8
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 1.7e-21 106.7 165 41.8
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 1.7e-21 106.7 149 43.0
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 2.3e-21 106.3 150 45.3
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.3e-21 106.3 145 44.8
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 5.0e-21 105.1 163 44.2
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 5.0e-21 105.1 156 45.5
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 5.0e-21 105.1 158 43.0
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 6.6e-21 104.8 133 48.9
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 8.6e-21 104.4 149 41.6
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 8.6e-21 104.4 158 40.5
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 1.5e-20 103.6 177 39.5
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 1.5e-20 103.6 177 39.5
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 1.9e-20 103.2 158 41.8
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 3.3e-20 102.4 138 42.8
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 3.3e-20 102.4 144 46.5
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 9.5e-20 100.9 169 40.8
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 1.2e-19 100.5 168 38.7
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 1.2e-19 100.5 161 40.4
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 1.6e-19 100.1 139 43.9
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 2.1e-19 99.8 167 40.7
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 2.8e-19 99.4 161 41.6
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.6e-19 99.0 169 39.6
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 4.7e-19 98.6 143 42.0
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 6.1e-19 98.2 166 39.2
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 6.1e-19 98.2 156 39.7
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 6.1e-19 98.2 147 40.8
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 6.1e-19 98.2 135 45.2
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 6.1e-19 98.2 165 40.0
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 6.1e-19 98.2 149 41.6
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 6.1e-19 98.2 172 40.1
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 8.0e-19 97.8 130 44.6
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 8.0e-19 97.8 134 44.0
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 1.0e-18 97.4 153 41.8
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 1.0e-18 97.4 140 40.7
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.8e-18 96.7 157 36.9
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.3e-18 96.3 127 46.5
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 2.3e-18 96.3 137 39.4
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 2.3e-18 96.3 158 38.6
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 2.3e-18 96.3 158 38.6
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 2.3e-18 96.3 153 41.2
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 6.8e-18 94.7 153 43.8
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 6.8e-18 94.7 152 43.4
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 6.8e-18 94.7 159 40.3
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 6.8e-18 94.7 161 41.0
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.2e-17 94.0 157 40.1
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 1.2e-17 94.0 153 40.5
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 2.6e-17 92.8 160 40.6
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 2.6e-17 92.8 145 39.3
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 4.4e-17 92.0 154 39.0
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 4.4e-17 92.0 154 40.9
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 7.5e-17 91.3 146 39.0
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 7.5e-17 91.3 156 37.2
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 7.5e-17 91.3 137 41.6
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 7.5e-17 91.3 140 38.6
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 7.5e-17 91.3 162 38.9
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.7e-16 90.1 146 39.0
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 2.2e-16 89.7 136 39.0
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 2.9e-16 89.4 131 43.5
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 3.7e-16 89.0 153 42.5
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 4.9e-16 88.6 138 42.8
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 6.4e-16 88.2 146 37.0
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 8.3e-16 87.8 163 36.2
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 8.3e-16 87.8 139 41.7
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 8.3e-16 87.8 153 37.9
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.1e-15 87.4 151 36.4
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 1.1e-15 87.4 153 35.9
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 2.4e-15 86.3 150 34.7
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 2.4e-15 86.3 158 35.4
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 4.1e-15 85.5 151 37.7
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 4.1e-15 85.5 161 39.1
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 7.0e-15 84.7 150 38.0
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 7.0e-15 84.7 161 39.1
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 9.2e-15 84.3 156 35.9
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 9.2e-15 84.3 160 38.8
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.6e-14 83.6 162 38.3
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.7e-14 82.8 137 41.6
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 3.5e-14 82.4 144 35.4
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 4.6e-14 82.0 156 35.3
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 1.3e-13 80.5 149 37.6
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 3.9e-13 79.0 157 36.3
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.1e-12 77.4 134 38.8
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 1.1e-12 77.4 92 42.4
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 1.1e-12 77.4 143 38.5
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 3.3e-12 75.9 161 37.3
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 3.3e-12 75.9 161 37.3
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 5.6e-12 75.1 128 37.5
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 7.3e-12 74.7 149 35.6
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 7.3e-12 74.7 161 34.8
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 9.5e-12 74.3 150 34.0
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 9.5e-12 74.3 152 35.5
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 1.2e-11 73.9 98 43.9
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 2.1e-11 73.2 159 35.8
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 2.8e-11 72.8 150 32.0
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 2.8e-11 72.8 163 31.3
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 6.2e-11 71.6 153 35.3
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 1.4e-10 70.5 163 31.9
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 2.3e-10 69.7 163 30.1
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 2.3e-10 69.7 150 31.3
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 2.3e-10 69.7 150 31.3
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 2.3e-10 69.7 151 37.7
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 3.1e-10 69.3 115 39.1
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 3.1e-10 69.3 163 30.1
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 3.1e-10 69.3 107 38.3
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 3.1e-10 69.3 107 38.3
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 5.2e-10 68.6 148 35.1
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 6.8e-10 68.2 150 31.3
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 6.8e-10 68.2 152 34.9
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 8.9e-10 67.8 163 31.3
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 2.6e-09 66.2 65 52.3
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 2.6e-09 66.2 158 29.1
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 2.6e-09 66.2 158 29.1
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 2.6e-09 66.2 158 29.1
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 2.6e-09 66.2 147 33.3
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 4.4e-09 65.5 163 36.2
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 5.8e-09 65.1 148 32.4
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 1.3e-08 63.9 148 32.4
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 1.3e-08 63.9 148 32.4
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 1.3e-08 63.9 162 29.6
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 1.7e-08 63.5 148 31.8
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 2.2e-08 63.2 51 54.9
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 6.4e-08 61.6 154 32.5
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 8.3e-08 61.2 98 43.9
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 1.9e-07 60.1 119 34.5
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 3.2e-07 59.3 129 33.3
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 3.2e-07 59.3 98 32.7
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 9.2e-07 57.8 149 30.2
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 6.0e-06 55.1 83 39.8
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 7.8e-06 54.7 76 39.5


User provided reference genes

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