Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 0.0e+00 1445.6 733 100.0
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 0.0e+00 1218.0 709 83.9
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 0.0e+00 1200.3 719 81.9
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 4.8e-305 1050.8 710 71.8
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 1.3e-302 1042.7 724 69.8
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 2.9e-302 1041.6 734 70.7
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 2.5e-301 1038.5 717 70.7
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 6.5e-294 1013.8 715 69.4
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 1.0e-291 1006.5 711 69.1
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 2.3e-291 1005.4 708 70.2
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 3.0e-291 1005.0 711 68.9
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 3.0e-291 1005.0 711 69.3
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 5.1e-291 1004.2 715 70.3
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 2.0e-290 1002.3 714 67.5
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 1.7e-289 999.2 711 69.1
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 4.8e-289 997.7 711 69.1
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 6.3e-289 997.3 712 68.1
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 8.2e-289 996.9 765 66.0
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 1.1e-288 996.5 711 68.9
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 2.4e-288 995.3 710 69.2
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 4.1e-288 994.6 712 68.5
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 1.2e-287 993.0 721 67.0
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 3.5e-287 991.5 710 68.5
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 2.2e-286 988.8 723 68.0
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 3.2e-285 984.9 713 68.3
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 3.2e-285 984.9 713 68.3
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 2.1e-284 982.2 727 66.2
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 1.0e-283 979.9 711 67.8
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 3.0e-283 978.4 711 67.8
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 4.0e-283 978.0 711 67.7
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 8.8e-283 976.9 711 67.9
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 2.0e-282 975.7 689 68.7
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.6e-282 975.3 711 67.4
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 3.3e-282 974.9 715 66.6
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 1.3e-281 973.0 717 66.9
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 4.8e-281 971.1 715 67.7
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 8.2e-281 970.3 710 68.6
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.1e-280 969.9 706 67.4
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 1.4e-280 969.5 717 66.7
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 9.1e-280 966.8 734 64.9
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 2.0e-279 965.7 722 65.1
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 6.5e-278 960.7 726 66.5
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 2.5e-277 958.7 711 66.0
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 3.2e-277 958.4 712 66.3
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 1.6e-276 956.1 722 65.9
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 8.8e-275 950.3 712 66.2
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 7.5e-274 947.2 711 65.4
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 1.7e-273 946.0 711 65.4
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 8.3e-273 943.7 713 65.8
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 9.1e-272 940.3 757 62.4
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 1.2e-271 939.9 704 66.2
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 3.5e-271 938.3 711 65.4
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 2.2e-270 935.6 711 64.4
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 2.9e-270 935.3 704 65.8
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 3.2e-269 931.8 762 63.3
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 4.2e-269 931.4 668 68.6
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 6.1e-268 927.5 711 65.3
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 5.2e-267 924.5 710 63.5
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 9.8e-266 920.2 710 63.4
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 8.3e-265 917.1 717 63.3
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 1.1e-264 916.8 734 61.2
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 3.8e-262 908.3 720 63.1
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 3.8e-262 908.3 711 63.7
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 9.5e-261 903.7 714 62.0
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 3.4e-258 895.2 695 63.0
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 2.9e-257 892.1 592 73.1
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 6.6e-254 880.9 729 62.3
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 2.8e-252 875.5 824 55.0
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 8.9e-251 870.5 721 62.1
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 2.9e-249 865.5 615 67.5
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 3.1e-243 845.5 711 60.6
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 4.4e-242 841.6 714 62.5
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 6.4e-241 837.8 731 59.0
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 4.1e-240 835.1 713 59.9
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 3.0e-238 828.9 714 58.5
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 5.8e-234 814.7 714 57.6
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 9.6e-229 797.3 537 70.6
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 3.6e-228 795.4 725 56.6
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 8.1e-228 794.3 725 56.1
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 2.6e-226 789.3 662 60.0
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 3.8e-225 785.4 725 55.9
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 4.9e-225 785.0 617 61.9
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 1.1e-224 783.9 725 55.7
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 1.1e-224 783.9 725 55.7
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 9.3e-224 780.8 723 55.6
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 1.3e-222 776.9 715 55.8
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 1.1e-221 773.9 729 54.9
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 1.2e-215 753.8 728 57.1
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 3.9e-214 748.8 623 59.7
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 1.5e-210 736.9 740 53.1
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 1.3e-196 690.6 733 51.4
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.1e-192 677.6 475 69.9
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 5.3e-187 658.7 610 55.6
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 1.1e-184 651.0 466 68.5
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 1.7e-180 637.1 473 65.3
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 1.1e-173 614.4 480 62.9
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 7.2e-168 595.1 449 63.5
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 5.9e-162 575.5 743 43.1
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 1.7e-161 573.9 456 61.6
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 2.2e-161 573.5 738 42.5
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 3.4e-149 533.1 433 62.8
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 1.7e-145 520.8 393 63.6
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 2.3e-145 520.4 481 55.3
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 1.1e-144 518.1 688 44.9
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 1.2e-143 514.6 412 60.4
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 5.2e-142 509.2 413 62.0
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 9.5e-128 461.8 683 40.7
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 7.1e-123 445.7 755 37.7
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 2.3e-121 440.7 381 59.1
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 5.1e-121 439.5 742 39.8
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 7.6e-109 399.1 370 56.8
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 6.0e-106 389.4 294 65.0
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 6.6e-105 386.0 327 59.6
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 4.5e-101 373.2 332 58.4
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.6e-82 311.6 186 79.6
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 6.3e-71 273.1 245 58.8
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 2.7e-66 257.7 206 61.2
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 1.6e-42 178.7 150 60.0
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 6.8e-41 173.3 315 37.1
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 1.7e-39 168.7 156 55.8
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 8.3e-39 166.4 143 60.1
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.9e-35 155.2 98 79.6
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 1.6e-34 152.1 555 26.3
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 6.1e-34 150.2 98 72.4
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 1.2e-32 146.0 162 51.9
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 2.0e-29 135.2 580 25.3
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 5.9e-29 133.7 131 52.7
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 5.0e-28 130.6 268 35.1
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 2.0e-24 118.6 98 58.2
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 3.5e-21 107.8 76 68.4
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 3.0e-20 104.8 86 62.8
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 3.9e-20 104.4 64 73.4
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.1e-19 102.8 84 61.9
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 6.2e-18 97.1 127 47.2
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 7.5e-16 90.1 121 51.2
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.5e-11 75.9 61 60.7
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 3.3e-11 74.7 51 66.7
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 1.6e-10 72.4 51 66.7
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 6.2e-10 70.5 56 62.5
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.8e-09 68.9 47 68.1
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 3.1e-09 68.2 46 67.4


User provided reference genes

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