Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 7.1e-251 870.2 446 100.0
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 1.9e-195 686.0 458 79.9
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 4.1e-190 668.3 443 81.0
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 1.7e-175 619.8 449 73.3
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 1.6e-173 613.2 418 75.8
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 1.0e-172 610.5 443 73.1
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 8.5e-172 607.4 451 71.2
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 1.6e-170 603.2 430 73.3
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 5.2e-169 598.2 443 70.9
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 3.4e-168 595.5 443 70.7
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 1.7e-167 593.2 450 68.4
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 8.3e-167 590.9 443 71.8
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.1e-166 590.5 446 71.1
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 4.1e-166 588.6 451 71.8
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 7.0e-166 587.8 457 72.2
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 3.8e-164 582.0 445 70.1
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.4e-161 573.5 450 68.4
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 6.8e-161 571.2 426 70.4
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 8.9e-161 570.9 404 72.3
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 1.2e-160 570.5 472 66.9
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 2.6e-160 569.3 446 68.8
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 3.4e-160 568.9 454 67.4
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 7.5e-160 567.8 451 69.0
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 1.7e-159 566.6 444 68.2
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 2.8e-159 565.8 407 70.5
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 4.9e-159 565.1 414 72.5
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 6.3e-159 564.7 417 71.5
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 8.3e-159 564.3 447 69.4
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 1.1e-158 563.9 448 67.4
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 2.4e-158 562.8 445 68.5
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 2.4e-158 562.8 458 67.5
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 2.4e-158 562.8 440 67.5
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 3.1e-158 562.4 446 66.8
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 4.1e-158 562.0 436 67.4
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 4.1e-158 562.0 416 70.7
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.6e-157 560.1 451 67.6
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.6e-157 560.1 451 67.6
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 2.0e-157 559.7 445 66.3
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 3.5e-157 558.9 447 67.1
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 1.0e-156 557.4 408 73.3
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 1.7e-156 556.6 442 69.5
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 1.7e-156 556.6 451 69.2
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 3.8e-156 555.4 447 67.6
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 3.8e-156 555.4 459 66.7
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 5.0e-156 555.1 418 68.9
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 5.0e-156 555.1 461 67.0
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 6.6e-156 554.7 447 67.6
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 6.6e-156 554.7 451 66.5
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 6.6e-156 554.7 454 67.4
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 6.6e-156 554.7 453 67.1
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 8.6e-156 554.3 441 68.7
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 1.1e-155 553.9 418 69.1
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 2.5e-155 552.7 412 72.3
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.5e-155 552.7 412 72.3
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 7.3e-155 551.2 452 65.9
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 9.5e-155 550.8 421 67.9
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 4.7e-154 548.5 402 73.4
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 6.1e-154 548.1 487 62.4
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 6.1e-154 548.1 415 68.9
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 8.0e-154 547.7 411 72.0
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.0e-153 547.4 446 67.3
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 2.3e-153 546.2 406 70.9
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 3.1e-153 545.8 449 66.8
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 1.5e-152 543.5 440 67.0
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 1.3e-151 540.4 525 58.5
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 1.3e-151 540.4 445 66.3
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 1.7e-151 540.0 419 67.1
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 8.3e-151 537.7 403 69.5
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.9e-150 536.6 412 68.0
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 5.4e-150 535.0 421 67.9
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 1.6e-149 533.5 447 67.3
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.6e-149 531.9 415 67.7
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 7.8e-149 531.2 440 64.8
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 7.8e-149 531.2 415 67.5
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 7.8e-149 531.2 415 67.5
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 2.3e-148 529.6 565 55.4
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 3.0e-148 529.3 405 67.7
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 1.1e-147 527.3 450 64.2
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 7.3e-147 524.6 406 68.5
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 7.3e-147 524.6 406 68.5
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 1.2e-146 523.9 405 67.9
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 1.2e-146 523.9 435 64.8
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 2.8e-146 522.7 416 68.5
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 3.6e-146 522.3 403 68.2
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 3.6e-146 522.3 405 67.7
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 3.6e-146 522.3 405 67.7
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 1.4e-145 520.4 404 67.6
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 5.8e-144 515.0 416 67.5
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 7.5e-144 514.6 453 63.8
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 7.5e-144 514.6 399 66.9
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 1.3e-143 513.8 445 62.7
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.1e-142 510.8 405 66.7
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 1.1e-142 510.8 434 64.7
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 1.2e-141 507.3 408 66.7
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.0e-140 504.2 445 62.2
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 3.0e-140 502.7 408 65.4
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 7.5e-136 488.0 395 64.8
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 4.9e-135 485.3 469 59.9
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 4.1e-134 482.3 450 61.6
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 7.8e-133 478.0 417 62.4
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 7.8e-133 478.0 486 54.9
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 6.2e-130 468.4 363 66.9
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 6.2e-130 468.4 404 62.1
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 6.2e-130 468.4 403 61.5
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.2e-127 459.9 403 61.0
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 4.9e-127 458.8 399 60.9
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 1.1e-126 457.6 460 58.3
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 9.2e-126 454.5 399 59.6
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.2e-125 454.1 399 60.2
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.0e-124 451.1 383 65.8
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 1.5e-123 447.2 401 61.8
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 3.3e-123 446.0 408 59.8
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 1.4e-121 440.7 381 62.2
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 1.3e-119 434.1 342 69.0
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 1.3e-119 434.1 389 63.5
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.2e-117 427.6 412 59.7
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.1e-115 421.0 417 57.6
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 1.5e-115 420.6 384 62.2
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 8.1e-114 414.8 411 55.0
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.6e-112 409.8 367 59.7
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 5.8e-112 408.7 357 61.6
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 2.4e-105 386.7 374 58.8
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 1.5e-104 384.0 368 56.5
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 2.9e-103 379.8 368 55.4
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 2.1e-101 373.6 369 57.5
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 7.9e-93 345.1 342 56.4
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 1.9e-91 340.5 576 40.1
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 7.7e-88 328.6 401 49.6
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 6.5e-87 325.5 409 47.7
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 2.5e-86 323.6 294 62.9
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 5.5e-86 322.4 334 54.8
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.7e-82 310.8 316 56.6
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 1.4e-76 291.2 288 58.3
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 1.8e-76 290.8 301 54.5
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 2.0e-75 287.3 275 57.5
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.1e-73 281.6 290 52.8
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 3.0e-60 236.9 121 95.0
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 2.7e-56 223.8 260 55.0
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 7.2e-54 215.7 208 60.6
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 5.0e-47 193.0 237 46.0
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 1.9e-46 191.0 339 35.1
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 1.9e-46 191.0 192 53.1
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 2.2e-42 177.6 114 80.7
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 7.3e-38 162.5 167 58.1
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 7.5e-35 152.5 161 59.0
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 1.1e-33 148.7 122 68.9
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 4.4e-27 126.7 103 64.1
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 8.3e-26 122.5 168 48.8
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 2.1e-24 117.9 73 74.0
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 1.1e-22 112.1 108 61.1
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.9e-22 111.3 66 84.8
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 4.3e-22 110.2 161 46.6
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 6.2e-21 106.3 58 89.7
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 1.8e-20 104.8 54 88.9
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 6.8e-20 102.8 99 54.5
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 1.5e-19 101.7 141 42.6
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 7.6e-19 99.4 65 69.2
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 5.4e-17 93.2 51 84.3
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 1.0e-15 89.0 63 65.1
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.3e-15 87.8 51 82.4
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 5.1e-15 86.7 85 61.2
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.1e-14 85.5 51 80.4
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.3e-14 83.6 55 74.5
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 7.3e-14 82.8 82 56.1
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 1.8e-12 78.2 51 74.5
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 4.0e-12 77.0 192 34.9
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.3e-10 72.0 81 51.9
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 2.2e-10 71.2 86 54.7
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 7.1e-09 66.2 75 54.7
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.1e-08 64.7 30 93.3
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 7.8e-08 62.8 36 86.1
EL10Ac9g22565 Beta vulgaris HOM05D003179 ORTHO05D003563 1.1e-06 58.9 332 22.6
EL10Ac8g20621 Beta vulgaris HOM05D003179 ORTHO05D003563 1.9e-06 58.2 310 24.8
Nn2g13754 Nelumbo nucifera HOM05D003179 ORTHO05D003563 2.5e-06 57.8 309 24.9
Rhsim01G0212600 Rhododendron simsii HOM05D003179 ORTHO05D003563 3.3e-06 57.4 312 23.1
AUR62029221 Chenopodium quinoa HOM05D003179 ORTHO05D003563 4.3e-06 57.0 311 23.2
Prupe.6G106900 Prunus persica HOM05D003179 ORTHO05D003563 4.3e-06 57.0 312 23.1
CDE02G0679 Ceratophyllum demersum HOM05D042044 ORTHO05D004670 5.6e-06 56.6 79 44.3
Eucgr.B02534 Eucalyptus grandis HOM05D003179 ORTHO05D003563 5.6e-06 56.6 313 23.3
SEGI_21143 Sequoiadendron giganteum HOM05D003179 ORTHO05D003563 9.6e-06 55.8 306 23.2


User provided reference genes

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