Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 3.5e-256 887.9 479 100.0
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 4.0e-191 671.8 477 70.9
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.9e-173 612.5 481 65.7
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.5e-169 600.1 467 70.2
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 5.4e-156 555.1 477 59.7
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 3.9e-154 548.9 485 58.4
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 4.7e-152 542.0 480 57.5
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 5.8e-150 535.0 489 56.4
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 4.1e-148 528.9 487 54.8
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 1.6e-147 526.9 496 56.9
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 1.3e-146 523.9 481 54.7
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 2.3e-146 523.1 478 55.2
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 3.0e-146 522.7 496 56.9
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 1.9e-145 520.0 484 55.2
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 5.6e-145 518.5 489 57.5
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 1.8e-143 513.5 483 54.2
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.4e-143 513.1 506 54.2
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 3.1e-143 512.7 503 52.3
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.1e-143 512.7 527 52.4
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.0e-142 510.0 527 51.8
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 1.7e-141 506.9 528 51.9
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 1.1e-140 504.2 484 54.5
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 1.4e-140 503.8 487 54.8
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 1.7e-138 496.9 510 53.3
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 5.1e-138 495.4 540 51.1
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 9.6e-137 491.1 512 49.6
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 1.4e-135 487.3 480 51.2
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 3.1e-135 486.1 500 51.2
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 6.9e-135 485.0 470 52.3
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 6.9e-135 485.0 511 49.5
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 2.6e-134 483.0 523 48.2
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 3.4e-134 482.6 508 49.2
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 2.2e-133 479.9 536 47.4
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 3.8e-133 479.2 477 51.2
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 3.8e-133 479.2 477 51.2
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 7.1e-132 474.9 531 47.1
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 9.3e-132 474.6 501 49.9
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 2.1e-131 473.4 521 47.6
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 7.9e-131 471.5 477 52.0
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 1.0e-130 471.1 477 51.6
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 1.3e-130 470.7 480 51.2
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 2.3e-130 469.9 498 50.4
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 6.6e-130 468.4 474 50.8
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 1.5e-129 467.2 553 45.6
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 1.5e-129 467.2 476 50.4
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 1.5e-129 467.2 484 51.2
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 2.8e-128 463.0 474 51.1
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 1.4e-127 460.7 475 49.9
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 4.0e-127 459.1 539 45.6
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 4.0e-127 459.1 540 45.9
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 5.8e-126 455.3 502 48.0
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 7.6e-126 454.9 513 47.6
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 1.3e-125 454.1 504 47.8
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 2.2e-125 453.4 530 46.4
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 2.2e-125 453.4 476 50.0
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 3.8e-125 452.6 510 47.3
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 8.4e-125 451.4 487 49.1
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 1.4e-124 450.7 494 49.0
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.9e-124 450.3 507 47.1
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 4.2e-124 449.1 479 48.9
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 1.6e-123 447.2 479 49.5
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 2.7e-123 446.4 415 54.7
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 3.5e-123 446.0 482 48.3
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 6.0e-123 445.3 545 47.3
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 1.3e-122 444.1 321 65.4
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 1.8e-122 443.7 528 45.3
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 2.3e-122 443.4 516 46.5
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 2.5e-121 439.9 491 50.1
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 7.4e-121 438.3 617 41.7
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 9.6e-121 438.0 481 48.4
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 1.3e-120 437.6 636 40.4
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 1.6e-120 437.2 525 46.9
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 2.1e-120 436.8 609 40.2
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 8.1e-120 434.9 525 45.0
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 1.8e-119 433.7 502 48.8
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 2.4e-119 433.3 523 44.2
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 2.4e-119 433.3 570 41.9
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 3.1e-119 433.0 514 44.4
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 4.0e-119 432.6 526 44.3
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 4.5e-118 429.1 506 46.2
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 6.5e-117 425.2 488 48.0
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 1.1e-116 424.5 476 49.8
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.6e-115 420.6 367 55.9
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 4.6e-115 419.1 537 43.9
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 4.6e-115 419.1 537 43.9
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 6.0e-115 418.7 536 47.9
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 1.0e-114 417.9 582 44.3
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 2.3e-114 416.8 492 46.5
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 2.3e-114 416.8 517 46.6
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 3.9e-114 416.0 524 44.5
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 3.3e-113 412.9 547 44.4
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 3.3e-113 412.9 441 48.3
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.6e-112 410.6 351 56.7
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 6.3e-112 408.7 548 44.5
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 9.0e-111 404.8 549 45.0
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 3.4e-110 402.9 524 43.1
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 3.8e-109 399.4 480 44.4
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 6.5e-109 398.7 514 44.0
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 3.2e-108 396.4 481 46.2
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 4.2e-108 396.0 481 45.9
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 7.2e-108 395.2 481 45.9
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 6.1e-107 392.1 447 48.1
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.0e-106 389.8 381 50.1
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 1.5e-102 377.5 426 46.7
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.0e-101 374.8 383 49.3
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 1.9e-100 370.5 515 43.3
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 2.5e-100 370.2 516 41.9
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 3.6e-99 366.3 507 46.2
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 1.8e-98 364.0 361 49.0
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 5.7e-97 359.0 482 41.9
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 9.7e-97 358.2 407 48.2
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 4.1e-95 352.8 491 40.5
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.0e-93 348.2 479 44.1
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.0e-93 348.2 497 42.1
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 2.8e-88 330.1 477 40.0
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 1.4e-87 327.8 479 41.8
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 4.5e-86 322.8 320 47.8
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 3.8e-85 319.7 479 38.4
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.5e-84 317.8 478 38.9
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 7.2e-84 315.5 493 42.6
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 4.7e-83 312.8 491 40.7
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 4.4e-81 306.2 406 43.1
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 1.6e-78 297.7 485 42.1
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 4.0e-74 283.1 247 53.8
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 3.8e-69 266.5 479 37.0
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 4.2e-68 263.1 315 38.7
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 1.2e-67 261.5 256 51.6
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 8.8e-66 255.4 315 43.5
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 5.7e-65 252.7 376 41.2
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 8.3e-64 248.8 372 37.4
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.1e-63 246.9 356 39.0
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 3.5e-62 243.4 210 52.9
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 8.6e-61 238.8 410 37.1
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 2.3e-58 230.7 373 38.1
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 2.6e-57 227.3 178 59.6
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.3e-53 214.2 151 70.9
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.5e-49 201.4 397 32.2
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 2.5e-44 184.1 484 31.0
ECA236G3386 Erigeron canadensis HOM05D004232 ORTHO05D004909 7.1e-39 166.0 135 59.3
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 2.8e-35 154.1 515 27.4
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 8.1e-35 152.5 127 55.9
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 3.1e-34 150.6 217 40.1
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 2.0e-33 147.9 273 38.8
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 6.4e-32 142.9 565 26.5
VMungo1215G1753 Vigna mungo HOM05D004232 ORTHO05D004909 1.0e-29 135.6 110 54.5
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 9.6e-28 129.0 450 25.6
ATR0629G098 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.6e-27 128.3 84 64.3
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 4.9e-24 116.7 432 23.4
CSS0018310 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 4.2e-23 113.6 275 32.4
Ah.06g190310 Amaranthus hybridus HOM05D004232 ORTHO05D004909 6.0e-22 109.8 67 70.1
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 5.1e-21 106.7 168 35.1
PRCOL_00000769 Prasinoderma coloniale HOM05D004232 ORTHO05D004909 1.9e-20 104.8 341 25.5
ATR0629G041 Amborella trichopoda HOM05D004232 ORTHO05D004909 7.3e-20 102.8 85 55.3
Nitab4.5_0008408g0040 Nicotiana tabacum HOM05D004232 ORTHO05D004909 7.3e-20 102.8 159 37.7
QL05p007864 Quercus lobata HOM05D004232 ORTHO05D004909 1.4e-18 98.6 71 63.4
CSS0031603 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.5e-17 95.1 275 30.5
QL05p007971 Quercus lobata HOM05D004232 ORTHO05D004909 7.6e-17 92.8 77 57.1
CARHR069300 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.4e-15 87.8 69 56.5
TPR.G29050 Trifolium pratense HOM05D004232 ORTHO05D004909 5.4e-15 86.7 86 46.5
Oeu050464.1 Olea europaea HOM05D004232 ORTHO05D004909 7.1e-15 86.3 76 51.3
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.1e-12 79.0 103 41.7
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 9.0e-10 69.3 217 26.7
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 9.0e-10 69.3 338 23.1
Nitab4.5_0000843g0060 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.0e-09 68.2 211 26.1
C06p53770 Brassica napus HOM05D004232 ORTHO05D004909 2.6e-09 67.8 87 50.6
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 2.6e-09 67.8 210 27.1
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 4.5e-09 67.0 185 28.6
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 5.8e-09 66.6 184 29.3
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 5.8e-09 66.6 337 22.0
HanXRQChr16g0532771 Helianthus annuus HOM05D004232 ORTHO05D004909 3.8e-08 63.9 41 61.0
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 6.4e-08 63.2 218 27.1
C02p46280 Brassica napus HOM05D000783 ORTHO05D000705 8.4e-08 62.8 54 53.7
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 5.5e-07 60.1 183 27.3
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 7.1e-07 59.7 179 25.7
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 1.2e-06 58.9 318 21.7


User provided reference genes

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