Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 5.0e-288 993.8 527 100.0
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 5.1e-200 701.4 542 70.1
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 5.7e-159 565.1 540 55.9
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 3.3e-154 549.3 545 54.1
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 6.1e-153 545.0 553 53.9
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 1.2e-151 540.8 541 56.0
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 2.7e-148 529.6 547 54.3
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 6.0e-148 528.5 547 54.3
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 8.6e-147 524.6 545 52.7
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 9.5e-146 521.2 536 53.0
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 1.6e-145 520.4 547 53.6
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 2.3e-144 516.5 543 52.1
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.7e-142 510.4 536 51.9
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 2.4e-141 506.5 547 52.7
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 2.7e-140 503.1 548 51.3
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 4.6e-140 502.3 534 50.2
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 5.1e-139 498.8 582 50.7
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 9.5e-138 494.6 503 55.5
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 3.6e-137 492.7 525 51.6
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.8e-136 490.3 527 50.9
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 2.6e-135 486.5 537 50.5
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 2.9e-134 483.0 547 49.4
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 1.9e-133 480.3 542 50.0
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 9.2e-133 478.0 529 49.9
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 2.7e-132 476.5 544 50.7
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 4.6e-132 475.7 549 49.9
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 2.3e-131 473.4 541 50.5
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 3.0e-131 473.0 535 48.8
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 8.6e-131 471.5 540 50.0
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 1.9e-130 470.3 536 49.1
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 1.9e-130 470.3 541 48.4
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.5e-130 469.9 532 48.7
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 7.3e-130 468.4 532 48.3
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 7.3e-130 468.4 548 48.4
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.2e-129 467.6 535 48.2
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 1.6e-129 467.2 535 49.0
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.6e-129 467.2 535 48.8
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 4.7e-129 465.7 540 47.6
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 2.4e-128 463.4 535 47.5
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 2.4e-128 463.4 548 48.9
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 2.0e-127 460.3 534 47.9
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 5.8e-127 458.8 529 50.3
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 4.9e-126 455.7 544 48.5
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 1.1e-125 454.5 531 48.0
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 1.4e-125 454.1 548 47.6
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 7.1e-125 451.8 444 56.8
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.2e-124 451.1 533 47.5
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 2.7e-124 449.9 540 48.7
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 3.5e-124 449.5 532 47.7
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 1.0e-123 448.0 541 47.9
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 3.0e-123 446.4 525 49.1
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 5.1e-123 445.7 549 49.4
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 1.5e-122 444.1 546 47.4
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 1.9e-122 443.7 683 40.3
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 4.3e-122 442.6 542 46.9
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 1.1e-120 438.0 542 47.8
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 4.0e-120 436.0 519 48.4
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 2.6e-119 433.3 515 48.0
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 4.4e-119 432.6 573 46.8
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 9.9e-119 431.4 519 48.2
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 4.9e-118 429.1 519 48.2
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 6.4e-118 428.7 525 46.5
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 5.4e-117 425.6 522 47.3
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 7.1e-117 425.2 531 46.5
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 1.2e-116 424.5 479 48.2
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 5.1e-115 419.1 515 47.4
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 1.5e-114 417.5 531 46.0
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 9.6e-114 414.8 475 50.7
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 2.1e-113 413.7 527 46.3
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 6.2e-113 412.1 470 49.6
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 1.4e-112 411.0 520 45.4
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 1.4e-112 411.0 539 46.6
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 2.6e-111 406.8 529 45.6
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 5.8e-111 405.6 525 45.1
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 9.9e-111 404.8 527 44.2
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 1.4e-109 401.0 531 46.5
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 2.7e-108 396.7 525 45.0
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 2.3e-107 393.7 525 44.0
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 8.7e-107 391.7 525 44.0
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 5.6e-106 389.0 524 46.6
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 5.6e-106 389.0 463 48.4
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 5.6e-106 389.0 538 42.6
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 7.4e-106 388.7 522 44.8
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 7.4e-106 388.7 392 53.8
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 1.6e-105 387.5 521 44.7
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 3.7e-105 386.3 525 45.5
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 6.2e-105 385.6 521 43.6
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 6.2e-105 385.6 522 44.6
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 8.1e-105 385.2 522 44.6
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 1.4e-104 384.4 521 44.3
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 2.4e-104 383.6 524 44.3
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 1.0e-102 378.3 465 47.7
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 2.3e-99 367.1 519 45.9
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 1.4e-93 347.8 520 42.5
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 1.9e-93 347.4 353 51.8
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.1e-90 338.2 324 54.9
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 1.5e-90 337.8 379 50.7
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 6.5e-86 322.4 556 39.0
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 4.2e-85 319.7 447 42.1
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 7.9e-84 315.5 313 53.7
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 1.1e-82 311.6 553 37.3
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.7e-76 290.4 371 47.7
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 6.1e-76 289.3 496 39.7
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 7.7e-71 272.3 442 38.5
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.3e-70 271.6 378 42.3
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 3.0e-67 260.4 484 36.6
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.7e-65 254.6 319 49.5
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 5.9e-63 246.1 430 37.7
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 1.3e-62 245.0 428 36.7
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.3e-62 245.0 277 49.8
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 1.3e-62 245.0 262 49.6
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 2.2e-62 244.2 280 49.3
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 8.0e-60 235.7 286 51.0
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 1.0e-54 218.8 217 54.4
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.1e-48 198.7 163 62.0
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.1e-48 197.2 160 62.5
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 3.1e-48 197.2 262 46.2
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 4.1e-48 196.8 278 45.0
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 1.7e-46 191.4 341 37.0
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.2e-44 185.3 197 51.8
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 1.4e-40 171.8 157 57.3
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 9.5e-37 159.1 254 39.0
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 4.7e-36 156.8 156 48.1
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 5.0e-30 136.7 122 63.1
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 2.1e-28 131.3 137 48.9
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 3.4e-26 124.0 119 51.3
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 6.4e-25 119.8 200 39.0
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.9e-24 118.2 232 36.6
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 3.2e-24 117.5 164 45.7
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 8.4e-17 92.8 100 47.0
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 9.6e-13 79.3 116 42.2
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 2.1e-12 78.2 167 34.7
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 7.6e-10 69.7 62 54.8
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 7.6e-10 69.7 62 54.8


User provided reference genes

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