Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0140271 Helianthus annuus HOM05D006461 ORTHO05D008199 2.4e-81 305.4 154 100.0
Lsat_1_v5_gn_9_48000 Lactuca sativa HOM05D006461 ORTHO05D008199 3.0e-47 192.2 161 68.3
ECA232G1267 Erigeron canadensis HOM05D006461 ORTHO05D008199 1.7e-42 176.4 161 63.4
arahy.Tifrunner.gnm1.ann1.8SK5FU Arachis hypogaea HOM05D006461 ORTHO05D008199 2.9e-34 149.1 141 61.0
Manes.08G158500 Manihot esculenta HOM05D006461 ORTHO05D008199 3.7e-34 148.7 100 79.0
arahy.Tifrunner.gnm1.ann1.W7YZT9 Arachis hypogaea HOM05D006461 ORTHO05D008199 6.4e-34 147.9 88 86.4
Peaxi162Scf00516g00428 Petunia axillaris HOM05D006461 ORTHO05D008199 1.4e-33 146.7 97 78.4
TAR375G0815 Trochodendron aralioides HOM05D006461 ORTHO05D008199 1.4e-33 146.7 93 82.8
Nn3g19117 Nelumbo nucifera HOM05D006461 ORTHO05D008199 1.9e-33 146.4 101 78.2
CAN.G732.29 Capsicum annuum HOM05D006461 ORTHO05D008199 2.4e-33 146.0 98 77.6
Aqoxy3G01574 Aquilegia oxysepala HOM05D006461 ORTHO05D008199 3.2e-33 145.6 91 79.1
Cfa016120 Carpinus fangiana HOM05D006461 ORTHO05D008199 3.2e-33 145.6 98 79.6
Rhsim03G0225700 Rhododendron simsii HOM05D006461 ORTHO05D008199 3.2e-33 145.6 110 71.8
CiPaw.05G210400 Carya illinoinensis HOM05D006461 ORTHO05D008199 4.1e-33 145.2 101 77.2
Dinv19309 Davidia involucrata HOM05D006461 ORTHO05D008199 4.1e-33 145.2 111 70.3
Sc03g0004610 Simmondsia chinensis HOM05D006461 ORTHO05D008199 4.1e-33 145.2 101 75.2
PGSC0003DMG400026478 Solanum tuberosum HOM05D006461 ORTHO05D008199 5.4e-33 144.8 100 75.0
Atru.chr2.1733 Acer truncatum HOM05D006461 ORTHO05D008199 7.1e-33 144.4 101 76.2
ClCG01G005420 Citrullus lanatus HOM05D006461 ORTHO05D008199 9.2e-33 144.1 95 80.0
MELO3C005387.2 Cucumis melo HOM05D006461 ORTHO05D008199 1.2e-32 143.7 89 82.0
CsaV3_5G005660 Cucumis sativus L. HOM05D006461 ORTHO05D008199 1.2e-32 143.7 89 82.0
Sed0021956 Sechium edule HOM05D006461 ORTHO05D008199 1.2e-32 143.7 94 80.9
Sopen03g028120 Solanum pennellii HOM05D006461 ORTHO05D008199 1.2e-32 143.7 100 74.0
Ca_26296_v3 Cicer arietinum L. HOM05D006461 ORTHO05D008199 1.6e-32 143.3 83 86.7
Potri.013G074100 Populus trichocarpa HOM05D006461 ORTHO05D008199 1.6e-32 143.3 111 69.4
Nitab4.5_0005545g0020 Nicotiana tabacum HOM05D006461 ORTHO05D008199 2.1e-32 142.9 96 76.0
QL09p005902 Quercus lobata HOM05D006461 ORTHO05D008199 2.7e-32 142.5 101 74.3
Nitab4.5_0000021g0870 Nicotiana tabacum HOM05D006461 ORTHO05D008199 3.5e-32 142.1 96 76.0
PGR119G0757 Punica granatum HOM05D006461 ORTHO05D008199 4.6e-32 141.7 96 79.2
Solyc03g097360.3 Solanum lycopersicum HOM05D006461 ORTHO05D008199 4.6e-32 141.7 100 73.0
EL10Ac7g16271 Beta vulgaris HOM05D006461 ORTHO05D008199 6.0e-32 141.4 88 81.8
DCAR_020437 Daucus carota HOM05D006461 ORTHO05D008199 7.8e-32 141.0 103 71.8
FAN12G0004 Fragaria x ananassa HOM05D006461 ORTHO05D008199 7.8e-32 141.0 82 86.6
FAN17G2347 Fragaria x ananassa HOM05D006461 ORTHO05D008199 7.8e-32 141.0 82 86.6
TPR.G30220 Trifolium pratense HOM05D006461 ORTHO05D008199 7.8e-32 141.0 105 72.4
VMungo0720G0947 Vigna mungo HOM05D006461 ORTHO05D008199 7.8e-32 141.0 83 85.5
Actinidia08786 Actinidia chinensis HOM05D006461 ORTHO05D008199 1.0e-31 140.6 153 54.9
Glyma.02G000900 Glycine max HOM05D006461 ORTHO05D008199 1.0e-31 140.6 83 84.3
Ah.08g222190 Amaranthus hybridus HOM05D006461 ORTHO05D008199 1.3e-31 140.2 93 76.3
Medtr1g040145 Medicago truncatula HOM05D006461 ORTHO05D008199 1.3e-31 140.2 94 75.5
SEGI_06006 Sequoiadendron giganteum HOM05D006461 ORTHO05D008199 1.3e-31 140.2 92 75.0
AUR62020207 Chenopodium quinoa HOM05D006461 ORTHO05D008199 1.7e-31 139.8 89 79.8
AUR62001576 Chenopodium quinoa HOM05D006461 ORTHO05D008199 2.3e-31 139.4 89 79.8
Cc02_g00020 Coffea canephora HOM05D006461 ORTHO05D008199 2.3e-31 139.4 164 52.4
FvH4_4g10840 Fragaria vesca HOM05D006461 ORTHO05D008199 2.3e-31 139.4 81 86.4
CANSAT54G2891 Cannabis sativa HOM05D006461 ORTHO05D008199 3.0e-31 139.0 90 77.8
Hma1.2p1_0074F.1_g039100 Hydrangea macrophylla HOM05D006461 ORTHO05D008199 3.0e-31 139.0 92 76.1
PSO063G2738 Papaver somniferum HOM05D006461 ORTHO05D008199 3.9e-31 138.7 88 77.3
Psat6g101920 Pisum sativum HOM05D006461 ORTHO05D008199 3.9e-31 138.7 105 70.5
Prupe.1G398900 Prunus persica HOM05D006461 ORTHO05D008199 3.9e-31 138.7 99 72.7
RcHm_v2.0_Chr4g0406641 Rosa chinensis HOM05D006461 ORTHO05D008199 3.9e-31 138.7 82 85.4
Hund20961 Selenicereus undatus HOM05D006461 ORTHO05D008199 3.9e-31 138.7 157 54.8
CDE12G0687 Ceratophyllum demersum HOM05D006461 ORTHO05D008199 6.6e-31 137.9 89 77.5
CiPaw.06G037900 Carya illinoinensis HOM05D006461 ORTHO05D008199 1.1e-30 137.1 89 82.0
unitig_62.g23822 Utricularia gibba HOM05D006461 ORTHO05D008199 1.1e-30 137.1 127 59.8
Duzib106G1824 Durio zibethinus HOM05D006461 ORTHO05D008199 1.5e-30 136.7 95 76.8
Lj6g0024347 Lotus japonicus HOM05D006461 ORTHO05D008199 1.5e-30 136.7 93 74.2
MSTRG.8560 Avicennia marina HOM05D006461 ORTHO05D008199 1.9e-30 136.3 106 67.0
Cc11_g04930 Coffea canephora HOM05D006461 ORTHO05D008199 3.3e-30 135.6 162 51.2
Manes.09G131300 Manihot esculenta HOM05D006461 ORTHO05D008199 3.3e-30 135.6 91 75.8
SGA_v2.0_scaffold51G18860 Striga asiatica HOM05D006461 ORTHO05D008199 3.3e-30 135.6 104 70.2
Mapoly0098s0024 Marchantia polymorpha HOM05D006461 ORTHO05D008199 4.3e-30 135.2 96 72.9
Thecc.05G228900 Theobroma cacao HOM05D006461 ORTHO05D008199 4.3e-30 135.2 95 76.8
SalBow2G0694 Salvia bowleyana HOM05D006461 ORTHO05D008199 5.6e-30 134.8 84 78.6
Gohir.D13G163800 Gossypium hirsutum HOM05D006461 ORTHO05D008199 7.3e-30 134.4 98 72.4
Gorai.013G199400 Gossypium raimondii HOM05D006461 ORTHO05D008199 7.3e-30 134.4 98 72.4
TWI32G0808 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 7.3e-30 134.4 100 72.0
Phvul.007G281100 Phaseolus vulgaris HOM05D006461 ORTHO05D008199 9.6e-30 134.0 82 80.5
GSVIVG01024255001 Vitis vinifera HOM05D006461 ORTHO05D008199 9.6e-30 134.0 78 85.9
Pp3c1_12810 Physcomitrium patens HOM05D006461 ORTHO05D008199 1.2e-29 133.7 98 69.4
Aa31LG11G12100 Aethionema arabicum HOM05D006461 ORTHO05D008199 2.8e-29 132.5 89 75.3
Migut.F00927 Erythranthe guttata HOM05D006461 ORTHO05D008199 2.8e-29 132.5 87 74.7
Ciclev10032825m.g Citrus clementina HOM05D006461 ORTHO05D008199 3.6e-29 132.1 99 72.7
Os06g0484600 Oryza sativa ssp. japonica HOM05D006461 ORTHO05D008199 6.2e-29 131.3 82 80.5
Gohir.A13G158700 Gossypium hirsutum HOM05D006461 ORTHO05D008199 8.1e-29 131.0 98 71.4
MD08G1049500 Malus domestica HOM05D006461 ORTHO05D008199 8.1e-29 131.0 91 71.4
BcaB01g04940 Brassica carinata HOM05D006461 ORTHO05D008199 1.1e-28 130.6 98 69.4
BcaB01g05208 Brassica carinata HOM05D006461 ORTHO05D008199 1.1e-28 130.6 98 69.4
A03p08420 Brassica napus HOM05D006461 ORTHO05D008199 1.1e-28 130.6 98 69.4
C03p09820 Brassica napus HOM05D006461 ORTHO05D008199 1.1e-28 130.6 98 69.4
BolC3t13470H Brassica oleracea HOM05D006461 ORTHO05D008199 1.1e-28 130.6 98 69.4
BraA03t10165Z Brassica rapa HOM05D006461 ORTHO05D008199 1.1e-28 130.6 98 69.4
CARHR195620 Cardamine hirsuta HOM05D006461 ORTHO05D008199 1.1e-28 130.6 98 70.4
BcaC04g18779 Brassica carinata HOM05D006461 ORTHO05D008199 1.4e-28 130.2 98 70.4
BraA10t44244Z Brassica rapa HOM05D006461 ORTHO05D008199 1.4e-28 130.2 98 70.4
A10p21840 Brassica napus HOM05D006461 ORTHO05D008199 1.8e-28 129.8 92 75.0
MD15G1045100 Malus domestica HOM05D006461 ORTHO05D008199 1.8e-28 129.8 91 70.3
C09p59590 Brassica napus HOM05D006461 ORTHO05D008199 2.4e-28 129.4 89 74.2
Sp6g26660 Schrenkiella parvula HOM05D006461 ORTHO05D008199 2.4e-28 129.4 89 74.2
AL6G28650 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 4.0e-28 128.6 89 74.2
Carub.0006s1580 Capsella rubella HOM05D006461 ORTHO05D008199 6.8e-28 127.9 89 74.2
THA.LOC104802902 Tarenaya hassleriana HOM05D006461 ORTHO05D008199 6.8e-28 127.9 93 72.0
BolC9t58798H Brassica oleracea HOM05D006461 ORTHO05D008199 1.2e-27 127.1 89 73.0
Thhalv10014786m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 1.2e-27 127.1 89 73.0
HPP92_003741 Vanilla planifolia HOM05D001207 ORTHO05D007056 2.6e-27 125.9 74 83.8
Sabra13G0064300 Salix brachista HOM05D006461 ORTHO05D008199 4.4e-27 125.2 105 64.8
BcaB08g36762 Brassica carinata HOM05D006461 ORTHO05D008199 5.8e-27 124.8 89 71.9
Lj7P538T25 Lonicera japonica HOM05D006461 ORTHO05D008199 7.6e-27 124.4 77 80.5
TWI60G1716 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 9.9e-27 124.0 100 69.0
Zm00001eb278180 Zea mays HOM05D006461 ORTHO05D008199 2.9e-26 122.5 82 74.4
Actinidia24631 Actinidia chinensis HOM05D006461 ORTHO05D008199 1.1e-25 120.6 79 75.9
SMO358G0572 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 4.2e-25 118.6 90 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1385 Anthoceros agrestis HOM05D006461 ORTHO05D008199 1.2e-24 117.1 88 65.9
Haze_00341 Corylus avellana HOM05D006461 ORTHO05D000508 2.1e-24 116.3 151 51.7
Hund18806 Selenicereus undatus HOM05D006461 ORTHO05D008199 1.3e-23 113.6 81 70.4
Cre09.g394701 Chlamydomonas reinhardtii HOM05D006461 ORTHO05D008199 3.3e-22 109.0 95 60.0
PRCOL_00004611 Prasinoderma coloniale HOM05D006461 ORTHO05D008199 6.2e-21 104.8 85 57.6
Sed0001670 Sechium edule HOM05D006461 ORTHO05D008199 1.7e-18 96.7 89 60.7
SMO358G0215 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 7.1e-17 91.3 79 51.9
MCO16G354 Micromonas commoda HOM05D006461 ORTHO05D008199 4.6e-16 88.6 81 56.8
CSS0025765 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 2.3e-15 86.3 48 87.5
CSS0040075 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 2.3e-15 86.3 48 87.5
Eucgr.A02995 Eucalyptus grandis HOM05D006461 ORTHO05D008199 3.0e-15 85.9 49 85.7
Lalb_Chr19g0127781 Lupinus albus HOM05D006461 ORTHO05D008199 3.3e-14 82.4 48 85.4
SHI39095 Sapria himalayana HOM05D006461 ORTHO05D008199 7.3e-14 81.3 90 53.3
Actinidia28897 Actinidia chinensis HOM05D006461 ORTHO05D008199 3.2e-09 65.9 103 42.7
AL3G12680 Arabidopsis lyrata HOM05D000403 ORTHO05D000350 1.5e-06 57.0 50 62.0
Psat1g121480 Pisum sativum HOM05D002854 ORTHO05D003051 1.5e-06 57.0 103 35.9
AL3G12640 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 1.9e-06 56.6 70 51.4
Ciclev10023008m.g Citrus clementina HOM05D002854 ORTHO05D003051 1.9e-06 56.6 87 37.9
PGR044G0659 Punica granatum HOM05D002854 ORTHO05D003051 2.5e-06 56.2 103 35.0
Thhalv10002241m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 3.3e-06 55.8 45 68.9
CsaV3_1G007440 Cucumis sativus L. HOM05D002854 ORTHO05D003051 5.6e-06 55.1 87 36.8
MELO3C002161.2 Cucumis melo HOM05D002854 ORTHO05D003051 7.4e-06 54.7 141 30.5
HanXRQChr06g0168501 Helianthus annuus HOM05D002854 ORTHO05D003051 9.6e-06 54.3 102 36.3


User provided reference genes

Program Settings