Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 0.0e+00 1771.1 947 100.0
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 1.3e-307 1059.7 1091 64.0
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 1.4e-248 863.6 1146 54.3
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 5.9e-247 858.2 1077 56.6
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 6.5e-161 572.4 1218 41.8
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 3.6e-143 513.5 1244 40.3
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 7.9e-143 512.3 1277 39.3
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 2.6e-138 497.3 1235 37.4
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 7.4e-133 479.2 1236 37.3
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 1.3e-132 478.4 1218 39.1
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 1.7e-132 478.0 1246 38.7
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 4.1e-131 473.4 1239 39.1
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 4.1e-131 473.4 1240 36.7
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 5.3e-131 473.0 1179 38.0
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.3e-129 468.4 1230 37.0
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.5e-128 464.9 1243 36.5
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 1.5e-128 464.9 1181 38.2
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 4.2e-128 463.4 1225 36.9
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 1.2e-127 461.8 1279 36.7
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 1.6e-127 461.5 1254 36.4
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 1.6e-127 461.5 1118 36.8
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 2.1e-127 461.1 1237 36.3
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 2.1e-127 461.1 1242 37.6
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 3.6e-127 460.3 1245 36.9
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 8.0e-127 459.1 1244 36.3
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 8.0e-127 459.1 1212 37.0
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 3.0e-126 457.2 1247 37.0
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 4.0e-126 456.8 1233 35.4
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 6.7e-126 456.1 1245 36.5
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 2.0e-125 454.5 1233 36.3
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 5.7e-125 453.0 1270 36.2
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 9.7e-125 452.2 1072 38.2
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 1.3e-124 451.8 1005 40.5
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 3.7e-124 450.3 1215 37.4
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 5.3e-123 446.4 1238 37.3
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 7.0e-123 446.0 1245 36.5
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 7.7e-122 442.6 1230 37.2
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 1.3e-121 441.8 1231 35.7
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 1.7e-121 441.4 1259 37.2
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 6.5e-121 439.5 1236 34.2
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 4.2e-120 436.8 1222 35.6
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 2.7e-119 434.1 1217 36.9
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 3.6e-119 433.7 1123 37.4
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 6.1e-119 433.0 1223 35.4
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 8.0e-119 432.6 1239 36.6
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 1.0e-118 432.2 1241 36.5
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 4.0e-118 430.3 1176 39.1
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 4.0e-118 430.3 1236 36.2
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 2.0e-117 427.9 1255 36.3
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 2.6e-117 427.6 1229 37.6
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 3.4e-117 427.2 1239 35.5
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 6.3e-116 422.9 1129 36.8
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 2.7e-114 417.5 1199 36.5
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 1.0e-113 415.6 1248 34.9
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 3.8e-113 413.7 991 38.3
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 5.2e-110 403.3 1208 35.7
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 2.0e-109 401.4 1055 36.0
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 9.8e-109 399.1 1243 35.2
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 1.1e-107 395.6 1075 36.8
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.8e-107 394.8 1248 34.7
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 2.4e-107 394.4 1261 33.0
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 4.1e-107 393.7 1245 35.5
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 4.1e-107 393.7 1196 32.6
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 9.2e-107 392.5 1207 35.6
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 1.2e-106 392.1 1146 35.9
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 1.3e-105 388.7 1148 34.3
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 5.0e-105 386.7 1259 33.0
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 8.6e-105 386.0 1224 34.8
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 8.6e-105 386.0 1190 35.5
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 1.9e-104 384.8 1256 35.0
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 4.0e-102 377.1 1155 35.1
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 3.4e-101 374.0 1156 34.3
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 1.3e-100 372.1 1138 34.1
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 4.9e-100 370.2 1077 32.1
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 1.4e-99 368.6 1165 33.9
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 1.9e-99 368.2 1234 33.5
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 3.2e-99 367.5 1264 33.2
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 5.4e-99 366.7 1154 32.1
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 1.2e-98 365.5 1230 33.9
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.6e-98 365.2 1390 31.5
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 1.0e-97 362.5 1147 34.4
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 1.3e-97 362.1 1146 32.1
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 6.6e-97 359.8 1220 33.0
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 1.2e-95 355.5 1077 34.7
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 1.2e-95 355.5 1144 34.4
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 1.6e-95 355.1 1069 34.7
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 6.2e-95 353.2 1060 35.2
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 6.2e-95 353.2 1060 35.2
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 6.2e-95 353.2 1060 35.2
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 7.8e-90 336.3 1011 36.6
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 9.5e-88 329.3 1178 33.7
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 8.1e-87 326.2 1231 31.4
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 9.9e-85 319.3 1167 33.2
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 6.0e-82 310.1 1112 32.8
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 3.9e-81 307.4 1250 30.6
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 1.2e-74 285.8 952 33.4
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 3.5e-74 284.3 437 44.9
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 1.7e-73 282.0 533 42.2
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 1.8e-70 271.9 903 33.0
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 8.4e-68 263.1 1223 28.9
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 1.5e-64 252.3 1211 28.5
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 3.1e-62 244.6 1010 32.4
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.0e-57 229.6 306 50.3
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 6.7e-57 226.9 1167 29.6
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 9.0e-54 216.5 1336 27.5
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 5.8e-53 213.8 908 31.3
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 3.2e-51 208.0 773 30.1
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 3.9e-49 201.1 217 55.8
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 5.7e-48 197.2 970 31.4
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 2.4e-46 191.8 925 29.9
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 1.7e-44 185.7 900 27.7
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 6.5e-44 183.7 466 36.7
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 1.8e-41 175.6 1047 25.6
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 5.1e-41 174.1 277 46.6
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 6.7e-41 173.7 193 53.4
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 1.4e-35 156.0 900 28.9
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 3.6e-34 151.4 417 33.8
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 3.0e-33 148.3 433 30.9
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 7.4e-32 143.7 190 46.8
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 6.3e-31 140.6 371 31.0
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 1.1e-30 139.8 363 33.9
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.2e-29 136.3 341 31.1
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 5.9e-29 134.0 305 39.7
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 5.9e-29 134.0 105 58.1
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 1.0e-28 133.3 139 54.7
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 1.7e-28 132.5 123 57.7
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 3.6e-26 124.8 377 35.5
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 6.1e-26 124.0 198 46.0
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 3.0e-25 121.7 166 39.2
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 4.8e-23 114.4 169 40.2
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 9.1e-22 110.2 185 39.5
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.2e-18 99.8 127 50.4
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 1.4e-17 96.3 139 40.3
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 2.3e-17 95.5 62 71.0
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 3.0e-17 95.1 170 38.8
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 9.7e-16 90.1 128 49.2
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.3e-15 89.7 210 36.7
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 6.3e-15 87.4 115 42.6
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 4.2e-11 74.7 53 62.3
HPP92_028292 Vanilla planifolia HOM05D004845 ORTHO05D005957 7.2e-11 73.9 130 40.8
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 9.4e-11 73.6 125 44.8
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 3.7e-07 61.6 220 27.3
SHI11166 Sapria himalayana HOM05D004845 ORTHO05D005957 1.8e-06 59.3 45 68.9
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 9.1e-06 57.0 128 40.6


User provided reference genes

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