Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 0.0e+00 1133.2 577 100.0
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 1.1e-256 889.8 601 77.5
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 3.7e-244 848.2 569 78.0
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 1.1e-211 740.3 526 71.5
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.3e-209 733.4 583 65.2
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 5.1e-209 731.5 583 64.7
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 2.1e-207 726.1 583 65.0
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 2.8e-207 725.7 573 67.5
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 2.8e-207 725.7 587 64.9
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 3.1e-206 722.2 577 65.3
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 2.9e-204 715.7 588 64.1
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 2.9e-204 715.7 584 64.4
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 1.4e-203 713.4 576 64.8
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 1.4e-203 713.4 555 65.2
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 3.2e-203 712.2 555 65.6
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 4.2e-203 711.8 555 65.0
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 3.0e-201 705.7 576 65.5
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 6.6e-201 704.5 525 69.0
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 8.7e-201 704.1 499 71.5
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 2.5e-200 702.6 564 65.4
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 8.1e-199 697.6 485 70.7
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 8.1e-199 697.6 485 72.4
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 1.1e-198 697.2 545 67.0
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 1.4e-198 696.8 485 71.3
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 3.1e-198 695.7 483 72.5
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 2.9e-196 689.1 519 67.4
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 2.9e-196 689.1 487 70.2
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 1.1e-195 687.2 567 63.3
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 1.9e-195 686.4 563 63.8
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 1.9e-195 686.4 563 63.8
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 4.2e-195 685.3 487 69.8
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 5.4e-195 684.9 500 69.0
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 9.3e-195 684.1 630 59.7
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 1.2e-194 683.7 565 65.3
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 2.3e-193 679.5 495 68.9
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 3.9e-193 678.7 732 54.1
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 2.8e-191 672.5 488 69.1
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 8.1e-191 671.0 516 66.9
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 1.5e-189 666.8 601 59.4
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 2.0e-189 666.4 490 69.4
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 2.6e-189 666.0 487 69.0
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 5.8e-189 664.8 552 62.5
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 9.9e-189 664.1 487 67.4
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 1.3e-188 663.7 487 67.4
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 2.2e-188 662.9 487 67.6
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 3.8e-188 662.1 487 67.1
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 4.9e-188 661.8 511 67.7
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 8.4e-188 661.0 487 67.4
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 1.1e-187 660.6 514 66.0
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 3.2e-187 659.1 546 63.0
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 4.2e-187 658.7 556 61.2
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 5.5e-187 658.3 493 67.3
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 9.3e-187 657.5 493 68.6
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 1.2e-186 657.1 539 63.1
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 2.1e-186 656.4 520 64.0
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 3.5e-186 655.6 571 62.0
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 2.3e-185 652.9 493 68.6
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 3.0e-185 652.5 492 68.1
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 6.7e-185 651.4 550 61.5
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 4.3e-184 648.7 487 66.5
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 5.6e-184 648.3 472 72.5
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 7.4e-184 647.9 483 68.1
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 9.6e-184 647.5 516 63.6
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 2.8e-183 646.0 552 62.1
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 6.2e-183 644.8 507 66.9
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 6.2e-183 644.8 505 66.3
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.5e-181 640.2 516 63.6
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 3.4e-181 639.0 487 66.5
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 2.2e-180 636.3 605 57.5
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 3.8e-180 635.6 498 65.3
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 6.5e-180 634.8 476 69.1
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 9.3e-179 630.9 488 66.8
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 7.9e-178 627.9 584 56.3
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 1.8e-177 626.7 487 65.3
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 2.3e-177 626.3 572 58.7
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 3.0e-177 625.9 484 65.7
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 4.8e-175 618.6 430 73.5
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 1.1e-174 617.5 541 60.1
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 3.1e-174 615.9 539 61.0
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.2e-173 614.0 548 62.4
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 2.0e-173 613.2 522 61.3
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 2.6e-173 612.8 484 64.5
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 1.7e-172 610.1 492 62.4
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 6.7e-169 598.2 489 62.2
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 4.3e-168 595.5 530 59.1
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 5.7e-168 595.1 494 62.1
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 1.7e-167 593.6 486 63.2
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 4.8e-167 592.0 486 63.0
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 6.3e-167 591.7 533 61.5
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 8.2e-167 591.3 535 60.4
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 5.3e-166 588.6 509 61.9
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 2.9e-164 582.8 570 57.5
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 3.9e-161 572.4 556 57.6
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 5.9e-157 558.5 393 73.8
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 3.7e-151 539.3 494 58.7
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 5.9e-149 531.9 391 70.1
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 4.0e-145 519.2 490 55.9
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 5.2e-145 518.8 508 58.1
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 5.7e-144 515.4 414 67.9
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 6.3e-143 511.9 546 50.9
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 4.1e-142 509.2 383 67.4
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 1.5e-139 500.7 509 52.5
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 6.3e-135 485.3 491 54.8
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.3e-127 461.1 505 48.9
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 1.7e-127 460.7 397 59.7
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 2.9e-124 449.9 293 78.2
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 1.4e-121 441.0 310 73.9
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 4.1e-118 429.5 403 57.8
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 2.2e-111 407.1 564 43.8
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.1e-110 404.8 369 59.9
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 3.1e-105 386.7 459 47.9
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 3.7e-103 379.8 356 57.6
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 3.5e-101 373.2 352 54.8
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 3.0e-100 370.2 495 43.6
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 1.6e-98 364.4 269 66.2
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 3.2e-94 350.1 359 54.6
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 3.6e-90 336.7 526 39.0
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 2.4e-89 334.0 281 64.1
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 2.6e-88 330.5 266 63.9
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 1.7e-87 327.8 327 58.4
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 3.9e-84 316.6 196 82.1
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 3.1e-81 307.0 335 51.9
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 2.0e-80 304.3 258 63.2
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 4.9e-79 299.7 329 51.7
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 4.9e-79 299.7 329 51.7
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 1.3e-74 285.0 291 50.9
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 9.0e-73 278.9 256 59.0
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 8.7e-68 262.3 194 69.6
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 2.8e-66 257.3 191 66.0
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 5.3e-65 253.1 251 57.0
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 1.0e-60 238.8 636 30.0
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 3.3e-59 233.8 178 66.3
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 3.7e-58 230.3 145 85.5
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 1.2e-56 225.3 155 76.1
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 7.7e-56 222.6 266 47.4
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 6.7e-52 209.5 125 88.0
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.1e-51 208.8 246 49.2
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 3.3e-51 207.2 245 48.6
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 4.7e-45 186.8 157 66.2
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 1.7e-39 168.3 117 70.9
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.7e-37 161.0 239 41.4
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 3.0e-36 157.5 168 50.0
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 3.9e-36 157.1 228 44.3
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 9.7e-35 152.5 230 41.3
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 1.1e-33 149.1 150 58.0
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 2.6e-32 144.4 155 49.7
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 4.7e-29 133.7 119 57.1
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 4.4e-27 127.1 253 37.9
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 1.6e-24 118.6 97 52.6
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 4.1e-17 94.0 72 62.5
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 9.1e-17 92.8 52 86.5
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 2.7e-16 91.3 74 63.5
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 4.5e-16 90.5 59 74.6
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 5.9e-16 90.1 60 70.0
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 8.6e-15 86.3 141 41.1
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-14 85.5 120 41.7
AUR62022240 Chenopodium quinoa HOM05D001329 ORTHO05D004946 2.1e-13 81.6 130 31.5
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.4e-12 79.0 77 50.6
SHI11147 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-11 75.1 81 50.6
Cpa.g.c44864 Carica papaya HOM05D001329 ORTHO05D004946 3.4e-11 74.3 53 58.5
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 7.5e-11 73.2 49 67.3
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 8.3e-10 69.7 52 67.3
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 2.4e-09 68.2 122 37.7
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 9.2e-09 66.2 51 60.8
Glyma.08G248800 Glycine max HOM05D001329 ORTHO05D004946 1.2e-08 65.9 48 72.9
Oeu043914.1 Olea europaea HOM05D001329 ORTHO05D004946 1.2e-08 65.9 54 51.9
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 1.6e-08 65.5 111 33.3
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 7.8e-08 63.2 54 50.0
RcHm_v2.0_Chr2g0141071 Rosa chinensis HOM05D001329 ORTHO05D004946 1.0e-07 62.8 51 54.9
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 2.3e-07 61.6 76 40.8
arahy.Tifrunner.gnm1.ann1.6Z8QT9 Arachis hypogaea HOM05D001329 ORTHO05D010271 8.6e-07 59.7 52 59.6
arahy.Tifrunner.gnm1.ann1.4Z5MNN Arachis hypogaea HOM05D001329 ORTHO05D004946 4.3e-06 57.4 33 81.8
CsaV3_5G013640 Cucumis sativus L. HOM05D001329 ORTHO05D004946 7.3e-06 56.6 45 53.3


User provided reference genes

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