Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0138991 Helianthus annuus HOM05D003771 ORTHO05D004396 0.0e+00 1112.8 576 100.0
HanXRQChr02g0040541 Helianthus annuus HOM05D003771 ORTHO05D004396 1.5e-240 836.3 574 76.8
ECA233G1083 Erigeron canadensis HOM05D003771 ORTHO05D004396 2.5e-240 835.5 574 77.0
Lsat_1_v5_gn_1_6680 Lactuca sativa HOM05D003771 ORTHO05D004396 2.0e-237 825.9 581 76.1
TWI34G0561 Tripterygium wilfordii HOM05D003771 ORTHO05D004396 1.0e-233 813.5 592 73.5
Nitab4.5_0000019g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 1.3e-233 813.1 605 72.1
Cc06_g23760 Coffea canephora HOM05D003771 ORTHO05D004396 9.5e-232 807.0 607 71.8
ClCG04G000570 Citrullus lanatus HOM05D003771 ORTHO05D004396 1.2e-231 806.6 597 72.4
Dinv12623 Davidia involucrata HOM05D003771 ORTHO05D004396 1.2e-231 806.6 610 71.1
COL.COLO4_37655 Corchorus olitorius HOM05D003771 ORTHO05D004396 1.6e-231 806.2 596 72.8
Sopen05g020060 Solanum pennellii HOM05D003771 ORTHO05D004396 1.6e-231 806.2 605 71.7
CAN.G587.52 Capsicum annuum HOM05D003771 ORTHO05D004396 8.0e-231 803.9 605 71.6
DCAR_020453 Daucus carota HOM05D003771 ORTHO05D004396 1.4e-230 803.1 607 71.0
CSS0004980 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 1.8e-230 802.7 606 71.1
MELO3C009070.2 Cucumis melo HOM05D003771 ORTHO05D004396 6.8e-230 800.8 597 72.0
Phvul.002G302000 Phaseolus vulgaris HOM05D003771 ORTHO05D004396 8.9e-230 800.4 594 71.9
Gohir.D05G000400 Gossypium hirsutum HOM05D003771 ORTHO05D004396 1.2e-229 800.0 595 71.9
Lj5A798G49 Lonicera japonica HOM05D003771 ORTHO05D004396 1.2e-229 800.0 620 69.4
Thecc.09G205400 Theobroma cacao HOM05D003771 ORTHO05D004396 1.2e-229 800.0 596 71.6
CsaV3_4G031470 Cucumis sativus L. HOM05D003771 ORTHO05D004396 1.5e-229 799.7 597 71.9
Gorai.009G000200 Gossypium raimondii HOM05D003771 ORTHO05D004396 1.5e-229 799.7 595 71.9
CiPaw.15G162500 Carya illinoinensis HOM05D003771 ORTHO05D004396 2.0e-229 799.3 597 71.7
Glyma.08G026700 Glycine max HOM05D003771 ORTHO05D004396 2.0e-229 799.3 593 71.8
Gohir.A05G000200 Gossypium hirsutum HOM05D003771 ORTHO05D004396 3.4e-229 798.5 595 71.8
Lj4g0002190 Lotus japonicus HOM05D003771 ORTHO05D004396 4.4e-229 798.1 594 71.7
SGA_v2.0_scaffold21G09599 Striga asiatica HOM05D003771 ORTHO05D004396 4.4e-229 798.1 608 70.6
Glyma.05G220300 Glycine max HOM05D003771 ORTHO05D004396 1.7e-228 796.2 593 71.7
Manes.02G223900 Manihot esculenta HOM05D003771 ORTHO05D004396 3.7e-228 795.0 607 70.8
Atru.chr12.1314 Acer truncatum HOM05D003771 ORTHO05D004396 6.4e-228 794.3 619 69.6
MSTRG.26513 Avicennia marina HOM05D003771 ORTHO05D004396 6.4e-228 794.3 612 69.9
Ciclev10007279m.g Citrus clementina HOM05D003771 ORTHO05D004396 1.1e-227 793.5 596 71.5
RcHm_v2.0_Chr4g0384941 Rosa chinensis HOM05D003771 ORTHO05D004396 1.1e-227 793.5 601 70.7
Potri.018G149400 Populus trichocarpa HOM05D003771 ORTHO05D004396 5.4e-227 791.2 610 70.0
Sed0018603 Sechium edule HOM05D003771 ORTHO05D004396 5.4e-227 791.2 596 71.0
CANSAT64G2070 Cannabis sativa HOM05D003771 ORTHO05D004396 9.2e-227 790.4 600 70.8
Migut.L01925 Erythranthe guttata HOM05D003771 ORTHO05D004396 9.2e-227 790.4 610 70.2
MD04G1002300 Malus domestica HOM05D003771 ORTHO05D004396 1.2e-226 790.0 604 69.7
Actinidia02465 Actinidia chinensis HOM05D003771 ORTHO05D004396 1.6e-226 789.6 606 70.3
PGR044G2258 Punica granatum HOM05D003771 ORTHO05D004396 1.6e-226 789.6 612 69.8
FvH4_4g00210 Fragaria vesca HOM05D003771 ORTHO05D004396 2.7e-226 788.9 602 69.9
QL11p007303 Quercus lobata HOM05D003771 ORTHO05D004396 3.5e-226 788.5 613 69.7
Oeu008632.1 Olea europaea HOM05D003771 ORTHO05D004396 6.0e-226 787.7 599 71.5
VMungo0251G3699 Vigna mungo HOM05D003771 ORTHO05D004396 6.0e-226 787.7 594 70.5
TAR383G0820 Trochodendron aralioides HOM05D003771 ORTHO05D004396 1.7e-225 786.2 626 68.4
TPR.G25458 Trifolium pratense HOM05D003771 ORTHO05D004396 2.3e-225 785.8 591 71.6
SalBow5G2520 Salvia bowleyana HOM05D003771 ORTHO05D004396 8.6e-225 783.9 625 68.6
GSVIVG01022289001 Vitis vinifera HOM05D003771 ORTHO05D004396 8.6e-225 783.9 612 70.1
Eucgr.E04317 Eucalyptus grandis HOM05D003771 ORTHO05D004396 1.9e-224 782.7 610 68.9
FAN17G2138 Fragaria x ananassa HOM05D003771 ORTHO05D004396 2.5e-224 782.3 602 69.3
Medtr8g100105 Medicago truncatula HOM05D003771 ORTHO05D004396 2.5e-224 782.3 591 70.7
Nn3g19428 Nelumbo nucifera HOM05D003771 ORTHO05D004396 2.5e-224 782.3 610 68.4
Duzib168G1435 Durio zibethinus HOM05D003771 ORTHO05D004396 4.3e-224 781.6 598 70.6
Psat7g020760 Pisum sativum HOM05D003771 ORTHO05D004396 7.3e-224 780.8 591 70.4
Ca_17443_v3 Cicer arietinum L. HOM05D003771 ORTHO05D004396 2.8e-223 778.9 591 70.7
Lju50C19G3 Lonicera japonica HOM05D003771 ORTHO05D004396 4.7e-223 778.1 620 67.4
Thhalv10012482m.g Eutrema salsugineum HOM05D003771 ORTHO05D004396 1.1e-222 776.9 592 70.3
CARHR104050 Cardamine hirsuta HOM05D003771 ORTHO05D004396 8.9e-222 773.9 596 70.0
Lalb_Chr05g0223831 Lupinus albus HOM05D003771 ORTHO05D004396 8.9e-222 773.9 594 69.7
PSO782G3876 Papaver somniferum HOM05D003771 ORTHO05D004396 8.9e-222 773.9 603 68.2
Sc06g0002410 Simmondsia chinensis HOM05D003771 ORTHO05D004396 8.9e-222 773.9 606 70.3
AL3G44140 Arabidopsis lyrata HOM05D003771 ORTHO05D004396 2.0e-221 772.7 596 69.6
PSO063G0153 Papaver somniferum HOM05D003771 ORTHO05D004396 2.6e-221 772.3 603 68.0
Nn1g00173 Nelumbo nucifera HOM05D003771 ORTHO05D004396 4.4e-221 771.5 610 67.5
Carub.0013s0005 Capsella rubella HOM05D003771 ORTHO05D004396 5.8e-221 771.2 596 69.5
FAN12G2055 Fragaria x ananassa HOM05D003771 ORTHO05D004396 5.8e-221 771.2 626 67.3
MD15G1427900 Malus domestica HOM05D003771 ORTHO05D004396 5.8e-221 771.2 602 69.1
BcaC01g06134 Brassica carinata HOM05D003771 ORTHO05D004396 7.5e-221 770.8 592 69.3
THA.LOC104808936 Tarenaya hassleriana HOM05D003771 ORTHO05D004396 7.5e-221 770.8 598 69.7
Sp6g13880 Schrenkiella parvula HOM05D003771 ORTHO05D004396 1.7e-220 769.6 592 69.1
FAN22G1465 Fragaria x ananassa HOM05D003771 ORTHO05D004396 1.9e-219 766.1 626 66.8
A03p16060 Brassica napus HOM05D003771 ORTHO05D004396 2.4e-219 765.8 594 69.0
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 3.2e-219 765.4 630 66.5
BcaB08g35516 Brassica carinata HOM05D003771 ORTHO05D004396 3.2e-219 765.4 592 68.9
BcaC04g20648 Brassica carinata HOM05D003771 ORTHO05D004396 3.2e-219 765.4 591 68.9
AT2G07360 Arabidopsis thaliana HOM05D003771 ORTHO05D004396 5.4e-219 764.6 598 69.2
Haze_19080 Corylus avellana HOM05D003771 ORTHO05D004396 5.4e-219 764.6 661 64.6
BraA03t10897Z Brassica rapa HOM05D003771 ORTHO05D004396 1.6e-218 763.1 594 68.9
Aqoxy3G04250 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 3.5e-218 761.9 607 67.2
C03p18900 Brassica napus HOM05D003771 ORTHO05D004396 1.3e-217 760.0 595 68.7
BcaB01g04159 Brassica carinata HOM05D003771 ORTHO05D004396 3.0e-217 758.8 592 68.9
Sabra18G0126200 Salix brachista HOM05D003771 ORTHO05D004396 7.3e-216 754.2 680 62.5
BolC3t14282H Brassica oleracea HOM05D003771 ORTHO05D004396 9.5e-216 753.8 614 66.8
ATR0626G390 Amborella trichopoda HOM05D003771 ORTHO05D004396 3.6e-215 751.9 621 65.9
Zm00001eb011800 Zea mays HOM05D003771 ORTHO05D004396 2.6e-213 745.7 593 68.0
Aa31sc328G10 Aethionema arabicum HOM05D003771 ORTHO05D004396 2.9e-212 742.3 641 63.7
Cpa.g.sc91.64 Carica papaya HOM05D003771 ORTHO05D004396 4.1e-211 738.4 610 67.2
AUR62034148 Chenopodium quinoa HOM05D003771 ORTHO05D004396 2.1e-210 736.1 608 66.8
AUR62014286 Chenopodium quinoa HOM05D003771 ORTHO05D004396 1.0e-209 733.8 615 66.0
SEGI_40037 Sequoiadendron giganteum HOM05D003771 ORTHO05D004396 1.5e-208 729.9 620 64.5
arahy.Tifrunner.gnm1.ann1.XKPK2Z Arachis hypogaea HOM05D003771 ORTHO05D004396 9.9e-205 717.2 615 65.0
arahy.Tifrunner.gnm1.ann1.TH49EC Arachis hypogaea HOM05D003771 ORTHO05D004396 3.2e-203 712.2 638 63.2
A10p09550 Brassica napus HOM05D003771 ORTHO05D004396 3.9e-201 705.3 592 65.0
Prupe.7G042600 Prunus persica HOM05D003771 ORTHO05D004396 5.6e-200 701.4 595 65.5
CDE07G1201 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 6.6e-193 677.9 613 61.8
Os03g0265700 Oryza sativa ssp. japonica HOM05D003771 ORTHO05D004396 5.4e-187 658.3 519 67.2
AagrBONN_evm.TU.Sc2ySwM_228.3008 Anthoceros agrestis HOM05D003771 ORTHO05D004396 9.3e-187 657.5 580 61.4
Pp3c15_18470 Physcomitrium patens HOM05D003771 ORTHO05D004396 1.8e-177 626.7 597 56.8
Mapoly0015s0202 Marchantia polymorpha HOM05D003771 ORTHO05D004396 5.1e-177 625.2 621 56.2
MBI14_g32940_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D004396 1.8e-169 600.1 513 65.1
Hund03218 Selenicereus undatus HOM05D003771 ORTHO05D004396 1.7e-156 557.0 460 65.7
SMO367G0435 Selaginella moellendorffii HOM05D003771 ORTHO05D004396 9.1e-150 534.6 545 54.7
BraA10t43030Z Brassica rapa HOM05D003771 ORTHO05D004396 1.0e-145 521.2 408 66.9
Rhsim01G0106700 Rhododendron simsii HOM05D003771 ORTHO05D004396 9.7e-144 514.6 536 57.3
BolC9t56986H Brassica oleracea HOM05D003771 ORTHO05D004396 1.1e-142 511.1 422 64.2
C09p41060 Brassica napus HOM05D003771 ORTHO05D004396 3.7e-135 486.1 361 68.7
CSS0043776 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 6.8e-129 465.3 580 50.2
MD07G1055500 Malus domestica HOM05D003771 ORTHO05D004396 1.1e-123 448.0 455 58.0
HPP92_018040 Vanilla planifolia HOM05D003771 ORTHO05D004396 1.5e-120 437.6 360 65.6
EL10Ac4g08749 Beta vulgaris HOM05D003771 ORTHO05D004396 7.5e-112 408.7 337 67.4
Aqoxy3G02692 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 5.0e-108 396.0 414 56.3
Hund19352 Selenicereus undatus HOM05D003771 ORTHO05D004396 1.5e-104 384.4 332 64.5
Peaxi162Scf00322g01517 Petunia axillaris HOM05D003771 ORTHO05D004396 3.9e-100 369.8 307 66.4
Lsat_1_v5_gn_8_69981 Lactuca sativa HOM05D003771 ORTHO05D004396 1.2e-93 348.2 214 83.6
HPP92_018039 Vanilla planifolia HOM05D003771 ORTHO05D004396 2.7e-85 320.5 244 70.1
AagrBONN_evm.TU.Sc2ySwM_369.331 Anthoceros agrestis HOM05D003771 ORTHO05D004396 2.5e-83 313.9 322 54.3
Nitab4.5_0006114g0020 Nicotiana tabacum HOM05D003771 ORTHO05D004396 2.8e-82 310.5 203 78.3
AagrBONN_evm.TU.Sc2ySwM_228.2996 Anthoceros agrestis HOM05D003771 ORTHO05D004396 3.1e-81 307.0 236 67.8
AagrBONN_evm.TU.Sc2ySwM_369.330 Anthoceros agrestis HOM05D003771 ORTHO05D004396 3.1e-81 307.0 236 67.8
vmacro20746 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 6.0e-77 292.7 232 67.2
C09p41070 Brassica napus HOM05D003771 ORTHO05D004396 2.2e-63 247.7 191 72.8
vmacro20748 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 6.0e-61 239.6 188 71.8
unitig_899.g15421 Utricularia gibba HOM05D003771 ORTHO05D004396 3.0e-60 237.3 236 57.2
Solyc05g025750.3 Solanum lycopersicum HOM05D003771 ORTHO05D004396 5.1e-60 236.5 151 80.8
Peaxi162Scf00322g01516 Petunia axillaris HOM05D003771 ORTHO05D004396 3.3e-59 233.8 151 80.1
Lsat_1_v5_gn_8_70001 Lactuca sativa HOM05D003771 ORTHO05D004396 2.8e-58 230.7 144 80.6
unitig_899.g15420 Utricularia gibba HOM05D003771 ORTHO05D004396 2.2e-55 221.1 157 72.6
vmacro20747 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 2.5e-54 217.6 310 44.8
Oeu036958.1 Olea europaea HOM05D003771 ORTHO05D004396 6.5e-47 193.0 134 70.9
unitig_899.g15422 Utricularia gibba HOM05D003771 ORTHO05D004396 4.6e-45 186.8 110 84.5
AagrBONN_evm.TU.Sc2ySwM_228.2997 Anthoceros agrestis HOM05D003771 ORTHO05D004396 7.7e-40 169.5 174 53.4
CBR_g10827 Chara braunii HOM05D003771 ORTHO05D004396 2.8e-34 151.0 419 30.1
Aqoxy3G02691 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 3.8e-31 140.6 83 83.1
CBR_g10825 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-30 139.0 110 62.7
Psat6g005640 Pisum sativum HOM05D003771 ORTHO05D004396 4.0e-28 130.6 127 58.3
VMungo0331G1237 Vigna mungo HOM05D003771 ORTHO05D004396 9.1e-25 119.4 75 80.0
AagrBONN_evm.TU.Sc2ySwM_228.2998 Anthoceros agrestis HOM05D003771 ORTHO05D004396 1.1e-22 112.5 74 73.0
Oeu036959.1 Olea europaea HOM05D003771 ORTHO05D004396 2.7e-21 107.8 81 74.1
TAR633G1498 Trochodendron aralioides HOM05D003771 ORTHO05D004396 1.0e-20 105.9 81 71.6
VMungo1209G0002 Vigna mungo HOM05D003771 ORTHO05D004396 6.8e-20 103.2 91 64.8
Lsat_1_v5_gn_7_78841 Lactuca sativa HOM05D003771 ORTHO05D004396 5.7e-19 100.1 136 47.1
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 5.7e-19 100.1 82 67.1
Lsat_1_v5_gn_4_142760 Lactuca sativa HOM05D003771 ORTHO05D012343 1.3e-18 99.0 109 54.1
VMungo0331G1533 Vigna mungo HOM05D003771 ORTHO05D004396 5.0e-15 87.0 77 61.0
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 7.5e-11 73.2 77 59.7
MBI05_g48085_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D004396 1.1e-06 59.3 68 54.4
MBI14_g31102_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D012924 1.1e-06 59.3 62 54.8
Nitab4.5_0006114g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 4.3e-06 57.4 30 93.3


User provided reference genes

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