Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 1.0e-39 166.4 91 100.0
HanXRQChr05g0138831 Helianthus annuus HOM05D003517 ORTHO05D009794 5.5e-25 117.5 62 96.8
HanXRQChr05g0138811 Helianthus annuus HOM05D003517 ORTHO05D009794 4.6e-24 114.4 62 95.2
HanXRQChr05g0138821 Helianthus annuus HOM05D003517 ORTHO05D009794 4.6e-24 114.4 62 95.2
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 7.9e-24 113.6 66 97.0
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 1.0e-18 96.7 57 94.7
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 1.0e-18 96.7 57 94.7
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 1.3e-18 96.3 57 93.0
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 5.0e-18 94.4 57 93.0
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 5.0e-18 94.4 57 93.0
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 5.0e-18 94.4 57 93.0
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 6.5e-18 94.0 57 93.0
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 6.5e-18 94.0 57 93.0
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 6.5e-18 94.0 57 93.0
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 1.9e-17 92.4 59 88.1
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 7.2e-17 90.5 57 89.5
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 7.2e-17 90.5 57 89.5
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 7.2e-17 90.5 57 89.5
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 7.2e-17 90.5 57 89.5
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 7.2e-17 90.5 57 89.5
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 7.2e-17 90.5 57 89.5
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 7.2e-17 90.5 57 89.5
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 7.2e-17 90.5 59 88.1
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 7.2e-17 90.5 59 88.1
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 7.2e-17 90.5 57 89.5
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 7.2e-17 90.5 57 89.5
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 1.2e-16 89.7 57 89.5
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 1.2e-16 89.7 57 87.7
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 2.7e-16 88.6 58 86.2
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 2.7e-16 88.6 58 86.2
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 4.6e-16 87.8 57 89.5
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 6.1e-16 87.4 57 87.7
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 6.1e-16 87.4 57 87.7
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 6.1e-16 87.4 57 87.7
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 6.1e-16 87.4 57 87.7
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 6.1e-16 87.4 57 87.7
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 6.1e-16 87.4 57 87.7
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 6.1e-16 87.4 57 87.7
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 6.1e-16 87.4 57 87.7
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 6.1e-16 87.4 57 87.7
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 6.1e-16 87.4 57 87.7
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 6.1e-16 87.4 57 87.7
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 6.1e-16 87.4 57 87.7
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 6.1e-16 87.4 57 87.7
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 7.9e-16 87.0 60 85.0
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 7.9e-16 87.0 60 85.0
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 1.0e-15 86.7 57 87.7
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 1.4e-15 86.3 59 84.7
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.8e-15 85.9 59 84.7
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 2.3e-15 85.5 59 84.7
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 2.3e-15 85.5 60 83.3
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.0e-15 85.1 57 86.0
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.9e-15 84.7 59 84.7
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.9e-15 84.7 59 83.1
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 5.1e-15 84.3 57 87.7
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 8.8e-15 83.6 57 86.0
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.5e-14 82.8 59 79.7
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.5e-14 82.8 59 79.7
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 3.3e-14 81.6 57 82.5
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.3e-14 81.3 59 81.4
Aqoxy12s041 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 7.4e-14 80.5 55 85.5
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 7.4e-14 80.5 59 78.0
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.3e-13 79.7 57 82.5
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 2.2e-13 79.0 57 82.5
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.7e-13 78.2 58 79.3
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.8e-13 77.8 48 87.5
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 1.4e-12 76.3 57 75.4
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 4.1e-12 74.7 57 77.2
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 5.3e-12 74.3 42 92.9
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 1.2e-11 73.2 42 90.5
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 2.0e-11 72.4 48 83.3
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 3.6e-08 61.6 40 82.5
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 1.0e-07 60.1 66 60.6
AT2G07718 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 2.0e-06 55.8 41 75.6
ATMG00590 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 2.0e-06 55.8 41 75.6
CARHR282960 Cardamine hirsuta HOM05D014754 ORTHO05D017434 5.7e-06 54.3 35 85.7


User provided reference genes

Program Settings