Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0138811 Helianthus annuus HOM05D003517 ORTHO05D009794 9.8e-58 226.5 107 100.0
HanXRQChr05g0138821 Helianthus annuus HOM05D003517 ORTHO05D009794 9.8e-58 226.5 107 100.0
HanXRQChr05g0138831 Helianthus annuus HOM05D003517 ORTHO05D009794 1.9e-56 222.2 107 98.1
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 6.4e-25 117.5 62 95.2
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 3.7e-12 75.1 37 97.3
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 3.7e-12 75.1 37 97.3
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 3.7e-12 75.1 37 97.3
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 3.7e-12 75.1 37 97.3
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 3.7e-12 75.1 37 97.3
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 3.7e-12 75.1 37 97.3
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 4.8e-12 74.7 37 94.6
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 1.4e-11 73.2 37 94.6
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 1.4e-11 73.2 37 94.6
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 1.4e-11 73.2 37 94.6
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 1.4e-11 73.2 37 94.6
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 1.4e-11 73.2 37 94.6
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 1.4e-11 73.2 37 94.6
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 1.4e-11 73.2 37 94.6
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 1.4e-11 73.2 37 94.6
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 1.4e-11 73.2 37 94.6
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 1.4e-11 73.2 37 94.6
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 1.8e-11 72.8 37 94.6
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 1.8e-11 72.8 37 94.6
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 1.8e-11 72.8 37 94.6
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 1.8e-11 72.8 37 94.6
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 2.4e-11 72.4 37 91.9
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 6.9e-11 70.9 37 91.9
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 6.9e-11 70.9 37 91.9
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 1.2e-10 70.1 39 87.2
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 1.2e-10 70.1 37 91.9
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 1.2e-10 70.1 37 91.9
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 1.2e-10 70.1 37 91.9
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 1.2e-10 70.1 37 91.9
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 1.2e-10 70.1 37 91.9
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 1.2e-10 70.1 37 91.9
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 1.2e-10 70.1 37 91.9
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 1.2e-10 70.1 37 91.9
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 1.2e-10 70.1 37 91.9
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 1.2e-10 70.1 37 91.9
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 1.2e-10 70.1 37 91.9
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 1.2e-10 70.1 37 91.9
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 1.2e-10 70.1 37 91.9
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 1.5e-10 69.7 37 91.9
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 1.5e-10 69.7 37 91.9
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 1.5e-10 69.7 37 91.9
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 2.0e-10 69.3 37 89.2
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 2.0e-10 69.3 37 91.9
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 2.0e-10 69.3 37 91.9
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 2.0e-10 69.3 37 89.2
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 2.6e-10 68.9 37 91.9
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 2.6e-10 68.9 37 91.9
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 2.6e-10 68.9 37 91.9
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 2.6e-10 68.9 37 91.9
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.4e-10 68.6 37 89.2
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 5.8e-10 67.8 37 89.2
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 7.6e-10 67.4 37 89.2
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.3e-09 66.6 37 89.2
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.2e-09 65.9 37 89.2
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 4.9e-09 64.7 37 86.5
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 6.5e-09 64.3 37 83.8
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 8.4e-09 63.9 37 81.1
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.4e-08 63.2 36 83.3
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.4e-08 63.2 37 86.5
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 1.9e-08 62.8 37 83.8
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.5e-08 62.4 37 81.1
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.5e-08 61.2 37 86.5
Aqoxy12s041 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 9.3e-08 60.5 35 88.6
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.7e-07 58.9 37 81.1
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 6.0e-07 57.8 37 81.1
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.0e-06 55.5 37 73.0
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 3.9e-06 55.1 43 67.4


User provided reference genes

Program Settings