Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 4.3e-272 940.6 446 100.0
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.9e-256 888.6 446 94.2
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 9.3e-211 736.9 434 79.5
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 1.3e-207 726.5 456 74.8
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 5.9e-205 717.6 457 72.9
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 1.2e-202 709.9 453 73.1
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 2.1e-202 709.1 457 72.6
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 2.7e-202 708.8 449 75.1
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 3.0e-201 705.3 456 72.8
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 5.1e-201 704.5 453 72.8
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 6.7e-201 704.1 443 76.3
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 1.9e-200 702.6 456 72.6
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 3.3e-200 701.8 460 72.0
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 3.3e-200 701.8 457 71.1
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 5.7e-200 701.0 456 72.4
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 7.4e-200 700.7 453 73.1
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 9.7e-200 700.3 457 70.9
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 9.7e-200 700.3 457 70.9
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 4.8e-199 698.0 456 72.1
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 1.8e-198 696.0 451 72.3
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 2.4e-198 695.7 457 72.6
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 2.4e-198 695.7 467 71.3
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 2.4e-198 695.7 453 72.6
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 5.3e-198 694.5 457 72.2
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 1.5e-197 693.0 460 71.3
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 2.6e-197 692.2 459 70.8
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 3.4e-197 691.8 449 72.8
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 4.5e-197 691.4 442 73.1
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 1.7e-196 689.5 452 71.7
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 5.0e-196 688.0 453 71.5
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 6.5e-196 687.6 453 71.5
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 6.5e-196 687.6 455 71.0
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 1.1e-195 686.8 458 71.0
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.4e-195 686.4 448 72.8
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.2e-195 685.3 456 71.3
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 1.4e-193 679.9 452 71.7
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 1.4e-193 679.9 457 69.8
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 3.9e-193 678.3 457 70.2
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 1.1e-192 676.8 459 68.8
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 1.4e-190 669.8 419 73.7
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.4e-190 669.8 453 68.7
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.8e-190 669.5 446 70.2
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 5.3e-190 667.9 456 68.4
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 7.0e-190 667.5 456 68.4
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 9.1e-190 667.2 453 69.8
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 2.6e-189 665.6 446 69.3
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.0e-188 663.7 456 68.0
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.0e-188 663.7 444 69.6
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 2.5e-187 659.1 455 68.1
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 3.2e-187 658.7 431 71.7
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 4.7e-186 654.8 432 71.8
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 1.0e-185 653.7 446 68.8
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.4e-185 653.3 451 67.4
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 2.3e-185 652.5 422 72.7
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 3.0e-185 652.1 443 71.1
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 6.7e-185 651.0 421 71.7
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 8.8e-185 650.6 421 72.0
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 5.7e-184 647.9 421 72.0
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 7.4e-184 647.5 405 74.1
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 2.2e-183 646.0 471 65.4
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 3.7e-183 645.2 436 70.4
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 6.3e-183 644.4 454 68.7
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 1.4e-182 643.3 455 67.9
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 1.2e-181 640.2 455 65.7
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.6e-181 639.8 461 67.2
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 3.8e-180 635.2 452 67.5
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 5.0e-180 634.8 463 66.7
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.5e-179 633.3 447 67.1
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.2e-179 631.7 462 66.7
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 5.5e-179 631.3 455 66.6
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 7.2e-179 630.9 457 66.7
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 9.4e-179 630.6 437 68.9
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.7e-178 628.2 458 66.6
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 4.7e-178 628.2 394 74.9
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 3.3e-176 622.1 445 66.3
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 8.2e-175 617.5 452 63.1
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 1.2e-173 613.6 455 62.9
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 1.2e-173 613.6 438 67.6
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.5e-173 612.1 453 63.4
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 4.5e-173 611.7 459 63.2
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 7.7e-173 610.9 454 63.7
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 3.8e-172 608.6 453 62.7
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 6.5e-172 607.8 459 65.1
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 6.5e-172 607.8 490 61.4
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 8.5e-172 607.4 454 65.2
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 4.2e-171 605.1 465 64.3
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 7.2e-171 604.4 458 62.2
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 1.6e-170 603.2 460 64.8
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 2.1e-170 602.8 458 62.0
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.1e-170 602.8 447 65.1
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.8e-169 599.7 458 62.2
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 1.8e-169 599.7 456 61.6
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 4.4e-168 595.1 458 61.4
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 4.4e-168 595.1 458 61.4
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 1.7e-167 593.2 458 62.2
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 1.7e-167 593.2 483 61.5
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 8.3e-167 590.9 469 59.9
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.0e-164 583.9 379 74.4
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 2.9e-164 582.4 459 61.2
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 1.2e-162 577.0 384 72.1
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.0e-161 573.9 434 64.5
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.6e-160 569.3 364 74.2
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 2.8e-159 565.8 405 64.9
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 8.3e-159 564.3 393 70.0
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 5.4e-158 561.6 438 60.3
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 3.3e-155 552.4 470 58.5
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.0e-153 547.4 403 65.3
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 3.1e-153 545.8 486 56.4
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 6.4e-151 538.1 529 52.4
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 5.6e-147 525.0 412 61.4
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 1.1e-145 520.8 449 55.0
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.4e-145 520.4 451 56.1
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 1.4e-145 520.4 420 60.7
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 3.1e-145 519.2 423 55.8
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 8.9e-145 517.7 429 56.9
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.3e-137 493.0 349 67.0
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 2.5e-131 473.0 415 55.4
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 4.7e-130 468.8 406 58.4
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 1.2e-117 427.6 451 48.6
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.3e-115 419.5 345 59.4
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 5.6e-115 418.7 290 70.0
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 2.1e-114 416.8 289 68.5
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 2.8e-114 416.4 345 58.8
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.0e-112 410.2 456 50.4
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 3.5e-109 399.4 388 49.2
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 3.9e-108 396.0 326 61.3
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.5e-107 394.0 416 51.9
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 1.4e-102 377.5 254 69.3
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 5.7e-91 339.0 412 42.5
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 1.1e-89 334.7 430 42.8
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 6.7e-84 315.5 202 70.3
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 5.3e-81 305.8 274 60.6
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 5.1e-76 289.3 212 69.3
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 8.5e-63 245.4 175 68.6
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 8.5e-55 218.8 225 54.7
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 4.4e-51 206.5 190 55.8
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.3e-50 204.9 119 76.5
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 1.9e-46 191.0 192 51.0
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 4.6e-40 169.9 154 53.9
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 1.3e-39 168.3 109 69.7
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 1.6e-37 161.4 230 40.4
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.0e-36 158.7 255 38.4
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.0e-35 154.5 253 38.3
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 1.3e-34 151.8 105 63.8
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 3.5e-32 143.7 191 42.9
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 1.9e-30 137.9 93 71.0
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 8.6e-23 112.5 253 32.4
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 1.5e-22 111.7 71 67.6
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.6e-21 107.1 85 60.0
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 5.8e-19 99.8 130 40.0
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 7.6e-19 99.4 58 74.1
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 1.1e-14 85.5 68 63.2
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 9.6e-14 82.4 77 54.5
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 1.8e-12 78.2 78 52.6
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.6e-08 65.1 38 71.1
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.6e-08 65.1 36 77.8
HanXRQChr07g0191491 Helianthus annuus HOM05D004439 ORTHO05D227226 6.0e-08 63.2 57 59.6


User provided reference genes

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