Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 3.7e-94 348.2 175 100.0
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 5.9e-76 287.7 167 85.6
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 2.7e-73 278.9 164 84.1
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 3.5e-68 261.9 160 79.4
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 1.7e-67 259.6 167 76.0
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.9e-66 256.1 166 76.5
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 4.2e-66 255.0 165 75.8
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 9.4e-66 253.8 165 74.5
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 2.1e-65 252.7 165 73.9
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 2.7e-65 252.3 165 73.9
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 1.0e-64 250.4 166 74.7
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.8e-64 249.6 165 73.9
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 3.0e-64 248.8 168 72.6
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 3.9e-64 248.4 166 72.3
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 3.9e-64 248.4 166 70.5
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 5.2e-64 248.1 167 71.9
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 5.2e-64 248.1 165 73.3
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 5.2e-64 248.1 162 75.3
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 1.5e-63 246.5 166 72.9
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 2.0e-63 246.1 166 71.7
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 3.3e-63 245.4 167 71.3
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 4.4e-63 245.0 165 72.7
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 4.4e-63 245.0 164 74.4
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 9.7e-63 243.8 166 72.9
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 9.7e-63 243.8 164 73.8
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 9.7e-63 243.8 166 72.9
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 9.7e-63 243.8 166 72.9
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 9.7e-63 243.8 166 72.9
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 9.7e-63 243.8 166 72.9
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 1.7e-62 243.0 169 69.2
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 2.2e-62 242.7 166 72.3
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 2.8e-62 242.3 166 72.9
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 2.8e-62 242.3 168 71.4
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 3.7e-62 241.9 166 72.3
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 3.7e-62 241.9 166 70.5
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 3.7e-62 241.9 166 71.7
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 4.8e-62 241.5 166 71.1
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 4.8e-62 241.5 164 72.6
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 6.3e-62 241.1 166 72.3
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 6.3e-62 241.1 163 74.2
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 8.2e-62 240.7 166 71.1
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 1.1e-61 240.4 166 72.3
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 1.1e-61 240.4 166 72.3
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 1.1e-61 240.4 166 72.3
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 1.1e-61 240.4 164 71.3
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 1.8e-61 239.6 166 70.5
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 1.8e-61 239.6 166 72.3
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 4.1e-61 238.4 166 69.9
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 5.3e-61 238.0 168 68.5
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 7.0e-61 237.7 164 71.3
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 9.1e-61 237.3 166 69.3
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 1.2e-60 236.9 166 69.3
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.6e-60 236.5 164 69.5
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.6e-60 236.5 193 64.2
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 2.6e-60 235.7 164 72.0
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 5.9e-60 234.6 166 68.7
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 7.7e-60 234.2 166 68.1
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 7.7e-60 234.2 168 67.3
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 1.0e-59 233.8 166 69.9
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 1.7e-59 233.0 161 70.8
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 2.2e-59 232.6 166 69.3
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 2.2e-59 232.6 169 66.9
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 5.0e-59 231.5 168 67.3
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 1.9e-58 229.6 166 67.5
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 2.5e-58 229.2 154 74.7
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 3.2e-58 228.8 168 66.1
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.2e-58 228.4 190 62.6
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 5.5e-58 228.0 168 65.5
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.2e-57 226.9 153 72.5
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 1.6e-57 226.5 159 69.8
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 1.6e-57 226.5 188 62.2
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 1.6e-57 226.5 166 65.7
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 3.6e-57 225.3 167 67.7
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 6.1e-57 224.6 166 66.9
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 8.0e-57 224.2 203 58.6
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 2.0e-55 219.5 162 66.7
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 3.4e-55 218.8 166 65.1
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 9.8e-55 217.2 164 64.6
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 2.2e-54 216.1 149 70.5
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 7.0e-53 211.1 166 60.8
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 1.6e-52 209.9 138 73.2
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 1.2e-49 200.3 139 69.1
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 2.7e-49 199.1 161 59.6
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.8e-48 196.4 160 60.0
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 8.8e-48 194.1 165 57.6
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 1.5e-47 193.4 158 60.8
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 1.5e-47 193.4 166 58.4
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 5.7e-47 191.4 137 65.7
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 9.8e-47 190.7 158 59.5
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 1.3e-46 190.3 174 59.8
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.7e-46 188.7 190 52.1
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.1e-45 187.2 162 54.3
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.4e-45 186.0 162 53.1
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 2.4e-45 186.0 117 76.9
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 3.1e-45 185.7 157 58.0
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 3.1e-45 185.7 160 55.6
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 4.1e-45 185.3 160 55.6
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 5.4e-45 184.9 160 55.6
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 5.4e-45 184.9 160 55.0
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 5.4e-45 184.9 160 55.0
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 7.0e-45 184.5 124 73.4
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 1.2e-44 183.7 118 76.3
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.5e-44 181.8 167 52.7
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 7.7e-44 181.0 122 73.0
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 1.3e-43 180.3 158 55.1
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.3e-43 180.3 160 54.4
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 1.7e-43 179.9 150 56.0
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 2.3e-43 179.5 136 61.0
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.8e-43 178.7 128 67.2
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 3.8e-43 178.7 139 61.9
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.1e-42 177.2 162 51.9
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 1.1e-42 177.2 127 66.9
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.1e-42 177.2 126 67.5
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 2.5e-42 176.0 137 60.6
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 8.0e-41 171.0 137 57.7
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 8.0e-41 171.0 119 69.7
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 3.0e-40 169.1 117 72.6
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 1.5e-39 166.8 138 61.6
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 2.6e-39 166.0 117 70.1
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 6.6e-35 151.4 130 60.8
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.1e-34 150.6 170 48.2
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 2.1e-33 146.4 118 58.5
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 3.6e-33 145.6 164 45.1
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 3.6e-33 145.6 161 48.4
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 2.6e-31 139.4 164 45.7
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 4.1e-29 132.1 142 49.3
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 4.1e-29 132.1 123 58.5
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 4.6e-28 128.6 126 54.0
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 6.0e-28 128.3 144 45.8
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 7.8e-28 127.9 126 54.8
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.5e-26 123.6 118 52.5
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.1e-25 119.8 122 50.0
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 6.8e-24 114.8 75 69.3
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 4.4e-23 112.1 71 73.2
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 4.9e-22 108.6 84 66.7
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 8.3e-22 107.8 164 39.6
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.0e-19 100.9 159 39.0
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.3e-19 99.8 92 54.3
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.3e-19 99.8 92 52.2
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 5.6e-18 95.1 75 57.3
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 5.6e-18 95.1 75 57.3
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 5.6e-18 95.1 75 57.3
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.4e-16 90.5 71 59.2
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 1.5e-15 87.0 53 69.8
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 8.4e-14 81.3 164 34.8
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 2.4e-13 79.7 75 58.7
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 5.4e-13 78.6 54 72.2
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 9.2e-13 77.8 72 56.9
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 4.6e-12 75.5 54 70.4
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.3e-11 73.9 58 67.2
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.0e-11 72.8 49 77.6
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 1.1e-10 70.9 49 69.4
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 1.1e-10 70.9 49 69.4
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 6.2e-09 65.1 58 50.0
QL12p027355 Quercus lobata HOM05D001289 ORTHO05D002298 4.9e-06 55.5 35 68.6


User provided reference genes

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