Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 7.5e-35 149.8 69 100.0
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 6.0e-16 87.0 41 95.1
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 5.1e-15 84.0 74 51.4
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 5.1e-15 84.0 74 51.4
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 6.6e-15 83.6 43 81.4
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 1.1e-14 82.8 43 81.4
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 1.1e-14 82.8 43 81.4
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.5e-14 82.4 41 85.4
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 1.5e-14 82.4 41 85.4
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 1.5e-14 82.4 41 85.4
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 2.5e-14 81.6 43 79.1
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 2.5e-14 81.6 41 85.4
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 3.3e-14 81.3 43 81.4
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 3.3e-14 81.3 41 82.9
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 3.3e-14 81.3 43 79.1
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 3.3e-14 81.3 41 82.9
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 4.3e-14 80.9 67 56.7
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 5.6e-14 80.5 43 79.1
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 5.6e-14 80.5 41 82.9
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 5.6e-14 80.5 41 82.9
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 5.6e-14 80.5 43 79.1
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 5.6e-14 80.5 43 79.1
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 7.3e-14 80.1 41 80.5
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 7.3e-14 80.1 43 81.4
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 9.6e-14 79.7 43 79.1
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 9.6e-14 79.7 41 80.5
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 9.6e-14 79.7 43 76.7
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 9.6e-14 79.7 43 76.7
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 1.3e-13 79.3 41 75.6
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.3e-13 79.3 42 78.6
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 1.6e-13 79.0 41 78.0
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 2.1e-13 78.6 43 76.7
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 2.1e-13 78.6 43 76.7
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 2.1e-13 78.6 41 78.0
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 2.1e-13 78.6 41 78.0
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 2.1e-13 78.6 66 54.5
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 2.1e-13 78.6 41 78.0
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 2.8e-13 78.2 41 80.5
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 2.8e-13 78.2 43 76.7
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 2.8e-13 78.2 43 76.7
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 2.8e-13 78.2 43 79.1
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 2.8e-13 78.2 41 78.0
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 2.8e-13 78.2 43 76.7
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 2.8e-13 78.2 41 78.0
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 2.8e-13 78.2 43 76.7
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 2.8e-13 78.2 43 74.4
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 3.6e-13 77.8 43 76.7
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 3.6e-13 77.8 43 76.7
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 3.6e-13 77.8 43 76.7
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 3.6e-13 77.8 43 76.7
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 3.6e-13 77.8 43 74.4
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 3.6e-13 77.8 41 80.5
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 3.6e-13 77.8 41 82.9
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 4.8e-13 77.4 43 74.4
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 4.8e-13 77.4 43 79.1
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 4.8e-13 77.4 42 76.2
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 4.8e-13 77.4 41 75.6
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 4.8e-13 77.4 41 78.0
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 6.2e-13 77.0 41 78.0
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 6.2e-13 77.0 43 79.1
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 6.2e-13 77.0 43 74.4
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 6.2e-13 77.0 43 79.1
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 6.2e-13 77.0 41 78.0
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 6.2e-13 77.0 41 78.0
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 6.2e-13 77.0 41 75.6
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 6.2e-13 77.0 41 75.6
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 1.1e-12 76.3 43 74.4
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 1.4e-12 75.9 43 79.1
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 1.4e-12 75.9 41 75.6
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 1.4e-12 75.9 41 75.6
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 1.4e-12 75.9 43 74.4
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 1.4e-12 75.9 43 74.4
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 1.4e-12 75.9 43 74.4
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 1.4e-12 75.9 43 74.4
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 1.4e-12 75.9 43 74.4
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 1.8e-12 75.5 41 73.2
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 1.8e-12 75.5 43 76.7
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 1.8e-12 75.5 41 75.6
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 1.8e-12 75.5 43 72.1
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 1.8e-12 75.5 43 72.1
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 1.8e-12 75.5 41 80.5
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 1.8e-12 75.5 74 51.4
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 2.4e-12 75.1 43 69.8
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 3.1e-12 74.7 43 69.8
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 3.1e-12 74.7 41 73.2
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 4.0e-12 74.3 41 70.7
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 4.0e-12 74.3 43 69.8
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 4.0e-12 74.3 41 78.0
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 4.0e-12 74.3 43 69.8
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 5.3e-12 73.9 41 75.6
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 5.3e-12 73.9 41 78.0
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 5.3e-12 73.9 69 52.2
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 5.3e-12 73.9 41 75.6
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 6.9e-12 73.6 43 65.1
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 6.9e-12 73.6 41 75.6
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.2e-11 72.8 43 67.4
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 1.2e-11 72.8 43 72.1
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 2.0e-11 72.0 43 69.8
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 2.0e-11 72.0 43 72.1
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 7.6e-11 70.1 41 75.6
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 9.9e-11 69.7 59 52.5
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 9.9e-11 69.7 43 65.1
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 4.9e-10 67.4 41 68.3


User provided reference genes

Program Settings