Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0138031 Helianthus annuus HOM05D001163 ORTHO05D001769 1.8e-43 178.7 81 100.0
HanXRQChr16g0519871 Helianthus annuus HOM05D001163 ORTHO05D001769 7.8e-31 136.7 62 96.8
HanXRQChr11g0335981 Helianthus annuus HOM05D001163 ORTHO05D001769 2.5e-29 131.7 69 84.1
HanXRQChr05g0151581 Helianthus annuus HOM05D001163 ORTHO05D001769 2.2e-25 118.6 60 88.3
HanXRQChr14g0456141 Helianthus annuus HOM05D001163 ORTHO05D001769 7.0e-24 113.6 65 72.3
ECA238G2182 Erigeron canadensis HOM05D001163 ORTHO05D001769 4.3e-21 104.4 71 66.2
Lj3A935G38 Lonicera japonica HOM05D001163 ORTHO05D001769 9.8e-18 93.2 71 59.2
Dinv36358 Davidia involucrata HOM05D001163 ORTHO05D001769 3.2e-16 88.2 55 67.3
CSS0029005 Camellia sinensis var. sinensis HOM05D001163 ORTHO05D001769 5.4e-16 87.4 61 60.7
Nn2g13882 Nelumbo nucifera HOM05D001163 ORTHO05D001769 9.2e-16 86.7 73 54.8
CiPaw.01G265000 Carya illinoinensis HOM05D001163 ORTHO05D001769 1.2e-15 86.3 65 56.9
Dinv31266 Davidia involucrata HOM05D001163 ORTHO05D001769 2.0e-15 85.5 61 59.0
Actinidia06719 Actinidia chinensis HOM05D001163 ORTHO05D001769 6.0e-15 84.0 55 61.8
Actinidia18556 Actinidia chinensis HOM05D001163 ORTHO05D001769 6.0e-15 84.0 55 61.8
CSS0033081 Camellia sinensis var. sinensis HOM05D001163 ORTHO05D001769 6.0e-15 84.0 68 55.9
Nitab4.5_0000107g0210 Nicotiana tabacum HOM05D001163 ORTHO05D001769 6.0e-15 84.0 55 63.6
TAR633G2218 Trochodendron aralioides HOM05D001163 ORTHO05D001769 6.0e-15 84.0 68 54.4
Solyc11g007910.2 Solanum lycopersicum HOM05D001163 ORTHO05D001769 1.0e-14 83.2 55 63.6
Gohir.D05G292150 Gossypium hirsutum HOM05D001163 ORTHO05D001769 1.3e-14 82.8 54 63.0
Nitab4.5_0000255g0020 Nicotiana tabacum HOM05D001163 ORTHO05D001769 1.3e-14 82.8 72 54.2
Cc02_g10550 Coffea canephora HOM05D001163 ORTHO05D001769 1.7e-14 82.4 65 53.8
Rhsim03G0111600 Rhododendron simsii HOM05D001163 ORTHO05D001769 1.7e-14 82.4 61 57.4
Sopen11g003770 Solanum pennellii HOM05D001163 ORTHO05D001769 1.7e-14 82.4 55 63.6
PGSC0003DMG400027362 Solanum tuberosum HOM05D001163 ORTHO05D001769 1.7e-14 82.4 55 63.6
Haze_16778 Corylus avellana HOM05D001163 ORTHO05D001769 2.3e-14 82.0 65 53.8
MBI18_g15814_MAGBIO Magnolia biondii HOM05D001163 ORTHO05D001769 2.3e-14 82.0 62 58.1
Actinidia38893 Actinidia chinensis HOM05D001163 ORTHO05D001769 3.0e-14 81.6 61 55.7
Cfa001773 Carpinus fangiana HOM05D001163 ORTHO05D001769 3.0e-14 81.6 65 53.8
Peaxi162Scf00253g00219 Petunia axillaris HOM05D001163 ORTHO05D001769 3.0e-14 81.6 55 61.8
TAR369G0606 Trochodendron aralioides HOM05D001163 ORTHO05D001769 3.0e-14 81.6 55 61.8
Duzib114G0656 Durio zibethinus HOM05D001163 ORTHO05D001769 3.9e-14 81.3 65 53.8
Gorai.009G308200 Gossypium raimondii HOM05D001163 ORTHO05D001769 3.9e-14 81.3 53 62.3
vmacro07199 Vaccinium macrocarpon HOM05D001163 ORTHO05D001769 3.9e-14 81.3 61 57.4
Hma1.2p1_0454F.1_g156250 Hydrangea macrophylla HOM05D001163 ORTHO05D001769 5.0e-14 80.9 74 52.7
Actinidia34787 Actinidia chinensis HOM05D001163 ORTHO05D001769 6.6e-14 80.5 61 55.7
Thecc.10G089900 Theobroma cacao HOM05D001163 ORTHO05D001769 6.6e-14 80.5 65 53.8
Migut.F01674 Erythranthe guttata HOM05D001163 ORTHO05D001769 8.6e-14 80.1 55 60.0
Nn6g35186 Nelumbo nucifera HOM05D001163 ORTHO05D001769 8.6e-14 80.1 62 56.5
Nitab4.5_0000593g0360 Nicotiana tabacum HOM05D001163 ORTHO05D001769 8.6e-14 80.1 55 61.8
Hund06765 Selenicereus undatus HOM05D001163 ORTHO05D001769 8.6e-14 80.1 74 51.4
Sabra08G0020200 Salix brachista HOM05D001163 ORTHO05D001769 1.1e-13 79.7 73 50.7
PGSC0003DMG400016919 Solanum tuberosum HOM05D001163 ORTHO05D001769 1.5e-13 79.3 55 61.8
Lj2A24T66 Lonicera japonica HOM05D001163 ORTHO05D001769 1.9e-13 79.0 73 54.8
Atru.chr12.913 Acer truncatum HOM05D001163 ORTHO05D001769 2.5e-13 78.6 54 61.1
Cpa.g.sc53.170 Carica papaya HOM05D001163 ORTHO05D001769 2.5e-13 78.6 62 51.6
COL.COLO4_32880 Corchorus olitorius HOM05D001163 ORTHO05D001769 2.5e-13 78.6 54 61.1
Nitab4.5_0006341g0010 Nicotiana tabacum HOM05D001163 ORTHO05D001769 2.5e-13 78.6 55 61.8
Manes.07G093800 Manihot esculenta HOM05D001163 ORTHO05D001769 4.3e-13 77.8 54 57.4
Potri.010G231100 Populus trichocarpa HOM05D001163 ORTHO05D001769 4.3e-13 77.8 73 47.9
TAR623G0804 Trochodendron aralioides HOM05D001163 ORTHO05D001769 4.3e-13 77.8 65 52.3
TAR629G3448 Trochodendron aralioides HOM05D001163 ORTHO05D001769 4.3e-13 77.8 65 52.3
TAR633G0853 Trochodendron aralioides HOM05D001163 ORTHO05D001769 4.3e-13 77.8 65 52.3
Potri.008G030100 Populus trichocarpa HOM05D001163 ORTHO05D001769 5.6e-13 77.4 73 49.3
MSTRG.27505 Avicennia marina HOM05D001163 ORTHO05D001769 7.3e-13 77.0 62 53.2
SalBow6G2739 Salvia bowleyana HOM05D001163 ORTHO05D001769 7.3e-13 77.0 67 53.7
Rhsim09G0145200 Rhododendron simsii HOM05D001163 ORTHO05D001769 9.5e-13 76.6 61 55.7
Sc20g0001490 Simmondsia chinensis HOM05D001163 ORTHO05D001769 9.5e-13 76.6 76 47.4
Lsat_1_v5_gn_2_103280 Lactuca sativa HOM05D001163 ORTHO05D001769 1.2e-12 76.3 67 55.2
Duzib106G1239 Durio zibethinus HOM05D001163 ORTHO05D001769 1.6e-12 75.9 54 61.1
ECA233G4552 Erigeron canadensis HOM05D001163 ORTHO05D001769 1.6e-12 75.9 70 47.1
Gohir.A05G291020 Gossypium hirsutum HOM05D001163 ORTHO05D001769 1.6e-12 75.9 53 58.5
QL08p053050 Quercus lobata HOM05D001163 ORTHO05D001769 2.1e-12 75.5 65 50.8
Sabra10G0179200 Salix brachista HOM05D001163 ORTHO05D001769 3.6e-12 74.7 72 47.2
Gorai.011G233800 Gossypium raimondii HOM05D001163 ORTHO05D001769 4.7e-12 74.3 65 49.2
Gohir.A10G200200 Gossypium hirsutum HOM05D001163 ORTHO05D001769 6.2e-12 73.9 65 49.2
Gohir.D10G208100 Gossypium hirsutum HOM05D001163 ORTHO05D001769 6.2e-12 73.9 65 49.2
Aqoxy1G01048 Aquilegia oxysepala HOM05D001163 ORTHO05D001769 8.1e-12 73.6 53 58.5
Solyc03g071680.2 Solanum lycopersicum HOM05D001163 ORTHO05D001769 8.1e-12 73.6 56 57.1
vmacro10264 Vaccinium macrocarpon HOM05D001163 ORTHO05D001769 8.1e-12 73.6 55 54.5
MSTRG.401 Avicennia marina HOM05D001163 ORTHO05D001769 1.1e-11 73.2 55 56.4
arahy.Tifrunner.gnm1.ann1.SHM2EA Arachis hypogaea HOM05D001163 ORTHO05D001769 1.8e-11 72.4 65 47.7
CiPaw.02G169900 Carya illinoinensis HOM05D001163 ORTHO05D001769 3.1e-11 71.6 53 56.6
Peaxi162Scf00543g00214 Petunia axillaris HOM05D001163 ORTHO05D001769 3.1e-11 71.6 54 57.4
THA.LOC104816446 Tarenaya hassleriana HOM05D001163 ORTHO05D001769 3.1e-11 71.6 62 51.6
arahy.Tifrunner.gnm1.ann1.PY5VJM Arachis hypogaea HOM05D001163 ORTHO05D001769 4.0e-11 71.2 65 46.2
Ciclev10030689m.g Citrus clementina HOM05D001163 ORTHO05D001769 4.0e-11 71.2 61 50.8
RcHm_v2.0_Chr1g0336281 Rosa chinensis HOM05D001163 ORTHO05D001769 4.0e-11 71.2 53 56.6
EL10Ac4g08632 Beta vulgaris HOM05D001163 ORTHO05D001769 1.2e-10 69.7 83 41.0
Lalb_Chr06g0170041 Lupinus albus HOM05D001163 ORTHO05D001769 1.2e-10 69.7 61 45.9
Prupe.2G094700 Prunus persica HOM05D001163 ORTHO05D001769 1.2e-10 69.7 65 46.2
Sopen03g019920 Solanum pennellii HOM05D001163 ORTHO05D001769 1.2e-10 69.7 56 55.4
SGA_v2.0_scaffold176G39390 Striga asiatica HOM05D001163 ORTHO05D001769 1.5e-10 69.3 57 54.4
TWI63G0053 Tripterygium wilfordii HOM05D001163 ORTHO05D001769 1.5e-10 69.3 54 55.6
MD02G1237400 Malus domestica HOM05D001163 ORTHO05D001769 2.0e-10 68.9 65 44.6
MD07G1074600 Malus domestica HOM05D001163 ORTHO05D001769 2.0e-10 68.9 65 43.1
ATR0043G042 Amborella trichopoda HOM05D001163 ORTHO05D001769 2.6e-10 68.6 53 50.9
Carub.0006s0339 Capsella rubella HOM05D001163 ORTHO05D001769 2.6e-10 68.6 75 44.0
Glyma.20G191400 Glycine max HOM05D001163 ORTHO05D001769 2.6e-10 68.6 65 44.6
PGR044G1566 Punica granatum HOM05D001163 ORTHO05D001769 2.6e-10 68.6 61 49.2
SGA_v2.0_scaffold41G15750 Striga asiatica HOM05D001163 ORTHO05D001769 2.6e-10 68.6 54 57.4
Oeu005285.1 Olea europaea HOM05D001163 ORTHO05D001769 3.4e-10 68.2 67 50.7
Medtr1g090803 Medicago truncatula HOM05D001163 ORTHO05D001769 4.4e-10 67.8 65 46.2
VMungo0720G0656 Vigna mungo HOM05D001163 ORTHO05D001769 4.4e-10 67.8 65 46.2
Aa31LG11G5320 Aethionema arabicum HOM05D001163 ORTHO05D001769 7.5e-10 67.0 54 51.9
Lj5g0003206 Lotus japonicus HOM05D001163 ORTHO05D001769 7.5e-10 67.0 61 47.5
Lalb_Chr02g0151121 Lupinus albus HOM05D001163 ORTHO05D001769 9.9e-10 66.6 61 44.3
Oeu005283.1 Olea europaea HOM05D001163 ORTHO05D001769 9.9e-10 66.6 67 49.3
Psat6g173560 Pisum sativum HOM05D001163 ORTHO05D001769 9.9e-10 66.6 65 47.7
SalBow4G1952 Salvia bowleyana HOM05D001163 ORTHO05D001769 9.9e-10 66.6 62 50.0
Sp6g38290 Schrenkiella parvula HOM05D001163 ORTHO05D001769 9.9e-10 66.6 54 51.9
TWI38G1849 Tripterygium wilfordii HOM05D001163 ORTHO05D001769 9.9e-10 66.6 54 55.6
Eucgr.G02736 Eucalyptus grandis HOM05D001163 ORTHO05D001769 1.3e-09 66.2 62 46.8
PSO339G4037 Papaver somniferum HOM05D001163 ORTHO05D001769 1.3e-09 66.2 65 47.7
ClCG05G021440 Citrullus lanatus HOM05D001163 ORTHO05D001769 1.7e-09 65.9 54 53.7
MELO3C012383.2 Cucumis melo HOM05D001163 ORTHO05D001769 1.7e-09 65.9 54 53.7
Glyma.10G198600 Glycine max HOM05D001163 ORTHO05D001769 1.7e-09 65.9 65 43.1
Lalb_Chr21g0313071 Lupinus albus HOM05D001163 ORTHO05D001769 1.7e-09 65.9 63 44.4
unitig_26.g9467 Utricularia gibba HOM05D001163 ORTHO05D001769 1.7e-09 65.9 60 50.0
AT5G04460 Arabidopsis thaliana HOM05D001163 ORTHO05D001769 2.9e-09 65.1 76 42.1
Ca_10456_v3 Cicer arietinum L. HOM05D001163 ORTHO05D001769 3.7e-09 64.7 61 45.9
TPR.G37745 Trifolium pratense HOM05D001163 ORTHO05D001769 3.7e-09 64.7 54 51.9
FvH4_7g06660 Fragaria vesca HOM05D001163 ORTHO05D001769 4.9e-09 64.3 61 44.3
FAN01G1559 Fragaria x ananassa HOM05D001163 ORTHO05D001769 4.9e-09 64.3 61 44.3
FAN03G3273 Fragaria x ananassa HOM05D001163 ORTHO05D001769 4.9e-09 64.3 61 44.3
FAN06G1746 Fragaria x ananassa HOM05D001163 ORTHO05D001769 4.9e-09 64.3 61 44.3
FAN10G3476 Fragaria x ananassa HOM05D001163 ORTHO05D001769 4.9e-09 64.3 61 44.3
PSO063G4402 Papaver somniferum HOM05D001163 ORTHO05D001769 4.9e-09 64.3 54 51.9
CsaV3_5G035810 Cucumis sativus L. HOM05D001163 ORTHO05D001769 6.4e-09 63.9 54 51.9
Phvul.007G145500 Phaseolus vulgaris HOM05D001163 ORTHO05D001769 6.4e-09 63.9 65 43.1
AL6G14090 Arabidopsis lyrata HOM05D001163 ORTHO05D001769 8.3e-09 63.5 72 40.3
BcaC06g32155 Brassica carinata HOM05D001163 ORTHO05D001769 1.1e-08 63.2 53 49.1
Phvul.011G087100 Phaseolus vulgaris HOM05D001163 ORTHO05D001769 1.1e-08 63.2 68 45.6
GSVIVG01031449001 Vitis vinifera HOM05D001163 ORTHO05D001769 1.1e-08 63.2 74 44.6
C09p72300 Brassica napus HOM05D001163 ORTHO05D001769 1.9e-08 62.4 60 41.7
Potri.004G217700 Populus trichocarpa HOM05D001163 ORTHO05D001769 2.4e-08 62.0 59 50.8
Sp3g08780 Schrenkiella parvula HOM05D001163 ORTHO05D001769 3.2e-08 61.6 54 50.0
VMungo1127G1387 Vigna mungo HOM05D001163 ORTHO05D001769 4.1e-08 61.2 66 45.5
arahy.Tifrunner.gnm1.ann1.J3U4LA Arachis hypogaea HOM05D001163 ORTHO05D001769 5.4e-08 60.8 66 45.5
arahy.Tifrunner.gnm1.ann1.WK0KEV Arachis hypogaea HOM05D001163 ORTHO05D001769 5.4e-08 60.8 66 45.5
CARHR208810 Cardamine hirsuta HOM05D001163 ORTHO05D001769 5.4e-08 60.8 54 48.1
Cc01_g10160 Coffea canephora HOM05D001163 ORTHO05D001769 5.4e-08 60.8 56 53.6
PGSC0003DMG400000421 Solanum tuberosum HOM05D001163 ORTHO05D001769 5.4e-08 60.8 57 50.9
BolC9t59974H Brassica oleracea HOM05D001163 ORTHO05D001769 7.1e-08 60.5 68 41.2
Glyma.12G082400 Glycine max HOM05D001163 ORTHO05D001769 7.1e-08 60.5 66 45.5
Ah.04g163560 Amaranthus hybridus HOM05D001163 ORTHO05D001769 1.2e-07 59.7 57 45.6
TPR.G32391 Trifolium pratense HOM05D001163 ORTHO05D001769 1.2e-07 59.7 56 55.4
A10p31630 Brassica napus HOM05D001163 ORTHO05D001769 1.6e-07 59.3 53 43.4
BraA10t45209Z Brassica rapa HOM05D001163 ORTHO05D001769 1.6e-07 59.3 53 43.4
DCAR_006388 Daucus carota HOM05D001163 ORTHO05D001769 1.6e-07 59.3 66 45.5
Dinv29389 Davidia involucrata HOM05D001163 ORTHO05D001769 1.6e-07 59.3 65 43.1
Cfa010135 Carpinus fangiana HOM05D001163 ORTHO05D001769 2.1e-07 58.9 63 46.0
Phvul.005G129700 Phaseolus vulgaris HOM05D001163 ORTHO05D001769 2.7e-07 58.5 58 51.7
Sopen11g026250 Solanum pennellii HOM05D001163 ORTHO05D001769 2.7e-07 58.5 57 49.1
arahy.Tifrunner.gnm1.ann1.7K6UQK Arachis hypogaea HOM05D001163 ORTHO05D001769 3.5e-07 58.2 66 45.5
arahy.Tifrunner.gnm1.ann1.IEY1AM Arachis hypogaea HOM05D001163 ORTHO05D001769 3.5e-07 58.2 66 45.5
Sed0016921 Sechium edule HOM05D001163 ORTHO05D001769 3.5e-07 58.2 48 54.2
HPP92_022575 Vanilla planifolia HOM05D001163 ORTHO05D001769 4.6e-07 57.8 53 47.2
Ca_01701_v3 Cicer arietinum L. HOM05D001163 ORTHO05D001769 6.0e-07 57.4 59 54.2
Ciclev10027818m.g Citrus clementina HOM05D001163 ORTHO05D001769 6.0e-07 57.4 50 52.0
Lj3g0008635 Lotus japonicus HOM05D001163 ORTHO05D001769 6.0e-07 57.4 66 43.9
Psat5g253280 Pisum sativum HOM05D001163 ORTHO05D001769 6.0e-07 57.4 56 53.6
CANSAT56G0151 Cannabis sativa HOM05D001163 ORTHO05D001769 7.8e-07 57.0 54 46.3
Glyma.12G179300 Glycine max HOM05D001163 ORTHO05D001769 7.8e-07 57.0 56 51.8
Glyma.13G321300 Glycine max HOM05D001163 ORTHO05D001769 7.8e-07 57.0 56 51.8
Lj3g0027003 Lotus japonicus HOM05D001163 ORTHO05D001769 7.8e-07 57.0 56 51.8
Medtr2g030405 Medicago truncatula HOM05D001163 ORTHO05D001769 7.8e-07 57.0 56 53.6
Ca_10760_v3 Cicer arietinum L. HOM05D001163 ORTHO05D001769 1.0e-06 56.6 62 48.4
Medtr2g084475 Medicago truncatula HOM05D001163 ORTHO05D001769 1.0e-06 56.6 56 53.6
Prupe.6G114200 Prunus persica HOM05D001163 ORTHO05D001769 1.3e-06 56.2 89 33.7
Glyma.11G191900 Glycine max HOM05D001163 ORTHO05D001769 1.7e-06 55.8 66 43.9
Nitab4.5_0000173g0250 Nicotiana tabacum HOM05D001163 ORTHO05D001769 1.7e-06 55.8 52 50.0
PGR119G0029 Punica granatum HOM05D001163 ORTHO05D001769 1.7e-06 55.8 51 49.0
Atru.chr3.3497 Acer truncatum HOM05D001163 ORTHO05D001769 2.3e-06 55.5 50 52.0
Peaxi162Scf00150g10111 Petunia axillaris HOM05D001163 ORTHO05D001769 2.3e-06 55.5 68 41.2
Solyc11g066500.2 Solanum lycopersicum HOM05D001163 ORTHO05D001769 2.3e-06 55.5 57 47.4
VMungo1080G0612 Vigna mungo HOM05D001163 ORTHO05D001769 2.3e-06 55.5 56 50.0
A05p38670 Brassica napus HOM05D001163 ORTHO05D001769 3.0e-06 55.1 54 44.4
BraA05t22658Z Brassica rapa HOM05D001163 ORTHO05D001769 3.0e-06 55.1 54 44.4
Gohir.A01G129400 Gossypium hirsutum HOM05D001163 ORTHO05D001769 3.0e-06 55.1 65 43.1
Zm00001eb190930 Zea mays HOM05D001163 ORTHO05D001769 3.0e-06 55.1 77 37.7
Gohir.D01G118200 Gossypium hirsutum HOM05D001163 ORTHO05D001769 3.9e-06 54.7 65 43.1
Gorai.002G143900 Gossypium raimondii HOM05D001163 ORTHO05D001769 3.9e-06 54.7 65 43.1
Lalb_Chr03g0027771 Lupinus albus HOM05D001163 ORTHO05D001769 6.6e-06 53.9 59 50.8
Lalb_Chr19g0136861 Lupinus albus HOM05D001163 ORTHO05D001769 6.6e-06 53.9 56 50.0
CANSAT64G0711 Cannabis sativa HOM05D001163 ORTHO05D001769 8.6e-06 53.5 82 35.4
AUR62041258 Chenopodium quinoa HOM05D001163 ORTHO05D001769 8.6e-06 53.5 55 43.6
AUR62043092 Chenopodium quinoa HOM05D001163 ORTHO05D001769 8.6e-06 53.5 55 45.5
SGA_v2.0_scaffold277G46707 Striga asiatica HOM05D001163 ORTHO05D001769 8.6e-06 53.5 57 47.4


User provided reference genes

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