Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 5.1e-102 374.4 187 100.0
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 4.8e-76 288.1 189 78.3
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 1.4e-75 286.6 190 77.4
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 2.2e-73 279.3 186 74.2
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 3.2e-72 275.4 195 72.8
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 3.2e-72 275.4 195 72.8
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 3.2e-72 275.4 195 72.8
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 6.1e-71 271.2 188 72.9
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 1.4e-70 270.0 187 75.9
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 1.4e-70 270.0 196 71.9
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 1.4e-70 270.0 197 70.6
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 3.9e-70 268.5 191 73.3
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 3.9e-70 268.5 191 73.3
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 6.7e-70 267.7 191 73.3
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 8.8e-70 267.3 192 71.9
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 8.8e-70 267.3 192 71.9
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 1.1e-69 266.9 192 71.9
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 1.1e-69 266.9 179 75.4
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.5e-69 266.5 191 72.8
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 1.5e-69 266.5 189 73.5
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 1.5e-69 266.5 190 71.6
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 2.0e-69 266.2 191 72.8
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 2.0e-69 266.2 188 72.9
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 2.6e-69 265.8 192 71.4
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 2.6e-69 265.8 192 71.9
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 3.3e-69 265.4 196 70.4
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 4.4e-69 265.0 192 72.9
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 4.4e-69 265.0 191 71.7
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 7.4e-69 264.2 168 78.0
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 9.7e-69 263.8 188 72.3
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.3e-68 263.5 189 72.5
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.3e-68 263.5 189 72.5
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.7e-68 263.1 187 72.7
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 2.2e-68 262.7 191 71.2
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 2.8e-68 262.3 198 70.7
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 2.8e-68 262.3 193 71.0
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 4.8e-68 261.5 200 69.0
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 8.2e-68 260.8 200 69.5
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 1.1e-67 260.4 191 71.2
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 1.1e-67 260.4 189 72.0
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 1.8e-67 259.6 206 67.0
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 2.4e-67 259.2 196 70.9
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 2.4e-67 259.2 194 71.1
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 3.1e-67 258.8 196 68.9
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 4.1e-67 258.5 197 68.5
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 5.3e-67 258.1 175 75.4
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 5.3e-67 258.1 191 71.7
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 5.3e-67 258.1 193 70.5
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 7.0e-67 257.7 194 70.1
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 9.1e-67 257.3 193 69.9
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 9.1e-67 257.3 197 70.6
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 2.0e-66 256.1 190 70.5
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 3.5e-66 255.4 178 74.2
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 3.5e-66 255.4 185 73.0
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 5.9e-66 254.6 197 69.5
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 1.0e-65 253.8 186 72.0
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 1.3e-65 253.4 196 69.4
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 2.2e-65 252.7 191 69.6
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 2.9e-65 252.3 175 73.1
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 6.5e-65 251.1 188 71.3
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 1.1e-64 250.4 174 73.6
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 1.5e-64 250.0 201 66.7
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 1.9e-64 249.6 189 69.3
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 1.9e-64 249.6 187 69.0
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 2.5e-64 249.2 196 68.9
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 3.2e-64 248.8 199 67.8
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 3.2e-64 248.8 199 67.3
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 5.5e-64 248.1 192 67.7
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 7.2e-64 247.7 201 66.2
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 7.2e-64 247.7 195 68.2
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 7.2e-64 247.7 198 67.2
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 9.4e-64 247.3 198 66.7
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 6.1e-63 244.6 201 65.2
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 6.1e-63 244.6 201 64.7
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 8.0e-63 244.2 201 65.2
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 8.0e-63 244.2 201 65.2
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 8.0e-63 244.2 201 65.2
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 8.0e-63 244.2 196 68.9
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 1.0e-62 243.8 198 66.2
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 3.0e-62 242.3 198 64.6
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 6.7e-62 241.1 198 64.6
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 6.7e-62 241.1 173 68.2
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 6.7e-62 241.1 179 68.7
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 8.8e-62 240.7 206 63.6
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 1.1e-61 240.4 187 66.3
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 1.5e-61 240.0 205 63.4
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 2.6e-61 239.2 204 64.2
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 2.6e-61 239.2 204 64.2
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 3.3e-61 238.8 185 67.6
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 3.3e-61 238.8 185 67.6
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 8.2e-60 234.2 186 64.0
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 9.1e-59 230.7 171 68.4
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 2.9e-57 225.7 204 61.8
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 3.0e-54 215.7 149 75.2
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.5e-53 213.4 196 61.7
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 3.4e-53 212.2 166 65.1
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 7.0e-51 204.5 156 67.3
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 7.0e-51 204.5 152 71.1
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 7.2e-48 194.5 194 58.2
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 5.2e-46 188.3 143 67.8
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 1.5e-45 186.8 173 53.8
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 2.0e-45 186.4 173 52.0
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 2.5e-40 169.5 175 48.0
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 7.2e-40 167.9 171 49.1
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 3.4e-37 159.1 175 52.0
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 4.9e-36 155.2 107 72.0
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 8.3e-36 154.5 107 72.0
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 3.0e-33 146.0 100 72.0
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 1.0e-30 137.5 121 53.7
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 4.0e-30 135.6 173 49.1
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 9.8e-21 104.4 131 47.3
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 4.7e-15 85.5 56 71.4
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 8.4e-12 74.7 68 58.8
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 9.2e-11 71.2 46 73.9
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 4.7e-07 58.9 56 58.9
Nn8g39713 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.8e-06 57.0 32 81.2


User provided reference genes

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