Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0137521 Helianthus annuus HOM05D003645 ORTHO05D004395 4.5e-86 321.2 163 100.0
Lsat_1_v5_gn_4_33021 Lactuca sativa HOM05D003645 ORTHO05D004395 3.2e-52 208.8 157 68.8
Lsat_1_v5_gn_3_140300 Lactuca sativa HOM05D003645 ORTHO05D004395 2.8e-48 195.7 158 63.9
Peaxi162Scf00786g00005 Petunia axillaris HOM05D003645 ORTHO05D004395 7.0e-39 164.5 134 61.2
CAN.G1415.29 Capsicum annuum HOM05D003645 ORTHO05D004395 2.0e-38 162.9 143 60.8
Solyc01g096000.2 Solanum lycopersicum HOM05D003645 ORTHO05D004395 5.9e-38 161.4 121 62.8
Sopen01g039720 Solanum pennellii HOM05D003645 ORTHO05D004395 5.9e-38 161.4 121 62.8
Cc02_g39420 Coffea canephora HOM05D003645 ORTHO05D004395 1.0e-37 160.6 132 60.6
PGSC0003DMG400000115 Solanum tuberosum HOM05D003645 ORTHO05D004395 2.2e-37 159.5 120 61.7
DCAR_025255 Daucus carota HOM05D003645 ORTHO05D004395 3.2e-36 155.6 126 58.7
Hma1.2p1_0139F.1_g063270 Hydrangea macrophylla HOM05D003645 ORTHO05D004395 5.5e-36 154.8 132 58.3
Lj2P165T30 Lonicera japonica HOM05D003645 ORTHO05D004395 5.5e-36 154.8 141 55.3
SGA_v2.0_scaffold5G03021 Striga asiatica HOM05D003645 ORTHO05D004395 1.2e-35 153.7 131 59.5
Nitab4.5_0006775g0010 Nicotiana tabacum HOM05D003645 ORTHO05D004395 3.6e-35 152.1 141 53.9
GSVIVG01027151001 Vitis vinifera HOM05D003645 ORTHO05D004395 3.6e-35 152.1 123 59.3
MBI06_g08483_MAGBIO Magnolia biondii HOM05D003645 ORTHO05D004395 8.0e-35 151.0 128 56.2
Sabra01G0066600 Salix brachista HOM05D003645 ORTHO05D004395 8.0e-35 151.0 143 54.5
A09p14690 Brassica napus HOM05D003645 ORTHO05D004395 1.0e-34 150.6 137 53.3
BraA09t37115Z Brassica rapa HOM05D003645 ORTHO05D004395 1.0e-34 150.6 137 53.3
RcHm_v2.0_Chr7g0194471 Rosa chinensis HOM05D003645 ORTHO05D004395 1.0e-34 150.6 152 53.9
Nitab4.5_0001210g0150 Nicotiana tabacum HOM05D003645 ORTHO05D004395 1.4e-34 150.2 141 53.2
Dinv32594 Davidia involucrata HOM05D003645 ORTHO05D004395 1.8e-34 149.8 131 58.8
C09p17780 Brassica napus HOM05D003645 ORTHO05D004395 2.3e-34 149.4 137 53.3
BolC9t54676H Brassica oleracea HOM05D003645 ORTHO05D004395 2.3e-34 149.4 137 53.3
FAN04G0742 Fragaria x ananassa HOM05D003645 ORTHO05D004395 5.2e-34 148.3 147 55.8
CiPaw.11G119800 Carya illinoinensis HOM05D003645 ORTHO05D004395 6.8e-34 147.9 145 54.5
SalBow3G4392 Salvia bowleyana HOM05D003645 ORTHO05D004395 6.8e-34 147.9 143 55.9
DCAR_005391 Daucus carota HOM05D003645 ORTHO05D004395 1.2e-33 147.1 132 54.5
Oeu007892.1 Olea europaea HOM05D003645 ORTHO05D004395 1.5e-33 146.7 131 55.7
CSS0000881 Camellia sinensis var. sinensis HOM05D003645 ORTHO05D004395 2.0e-33 146.4 119 58.8
Oeu007891.1 Olea europaea HOM05D003645 ORTHO05D004395 2.0e-33 146.4 131 55.7
Nn1g00238 Nelumbo nucifera HOM05D003645 ORTHO05D004395 2.6e-33 146.0 143 53.1
Manes.02G009000 Manihot esculenta HOM05D003645 ORTHO05D004395 3.4e-33 145.6 162 53.1
Nitab4.5_0013740g0010 Nicotiana tabacum HOM05D003645 ORTHO05D004395 3.4e-33 145.6 159 51.6
Carub.0002s0032 Capsella rubella HOM05D003645 ORTHO05D004395 4.4e-33 145.2 151 50.3
Sopen08g030720 Solanum pennellii HOM05D003645 ORTHO05D004395 7.5e-33 144.4 128 56.2
Thhalv10023571m.g Eutrema salsugineum HOM05D003645 ORTHO05D004395 1.3e-32 143.7 145 50.3
Glyma.08G023500 Glycine max HOM05D003645 ORTHO05D004395 1.7e-32 143.3 122 59.0
Hma1.2p1_0440F.1_g153400 Hydrangea macrophylla HOM05D003645 ORTHO05D004395 2.2e-32 142.9 141 52.5
PSO210G6387 Papaver somniferum HOM05D003645 ORTHO05D004395 2.2e-32 142.9 141 49.6
Solyc08g082470.1 Solanum lycopersicum HOM05D003645 ORTHO05D004395 2.2e-32 142.9 119 58.8
PGSC0003DMG400012142 Solanum tuberosum HOM05D003645 ORTHO05D004395 2.2e-32 142.9 119 58.8
Sabra03G0101700 Salix brachista HOM05D003645 ORTHO05D004395 2.8e-32 142.5 147 55.1
Sp2g00290 Schrenkiella parvula HOM05D003645 ORTHO05D004395 2.8e-32 142.5 137 54.0
AT1G64450 Arabidopsis thaliana HOM05D003645 ORTHO05D004395 3.7e-32 142.1 151 49.0
TPR.G30941 Trifolium pratense HOM05D003645 ORTHO05D004395 3.7e-32 142.1 122 59.0
TWI60G1019 Tripterygium wilfordii HOM05D003645 ORTHO05D004395 6.3e-32 141.4 145 53.8
Peaxi162Scf00074g00076 Petunia axillaris HOM05D003645 ORTHO05D004395 8.3e-32 141.0 144 54.2
Aa31LG2G1450 Aethionema arabicum HOM05D003645 ORTHO05D004395 1.1e-31 140.6 151 51.0
Nn3g18992 Nelumbo nucifera HOM05D003645 ORTHO05D004395 1.1e-31 140.6 134 54.5
TAR629G1680 Trochodendron aralioides HOM05D003645 ORTHO05D004395 1.4e-31 140.2 119 60.5
Potri.003G141200 Populus trichocarpa HOM05D003645 ORTHO05D004395 1.8e-31 139.8 147 53.7
arahy.Tifrunner.gnm1.ann1.QCE7ZS Arachis hypogaea HOM05D003645 ORTHO05D004395 2.4e-31 139.4 139 54.7
CSS0029909 Camellia sinensis var. sinensis HOM05D003645 ORTHO05D004395 2.4e-31 139.4 141 52.5
CSS0035334 Camellia sinensis var. sinensis HOM05D003645 ORTHO05D004395 2.4e-31 139.4 141 52.5
Dinv38825 Davidia involucrata HOM05D003645 ORTHO05D004395 3.1e-31 139.0 120 59.2
TWI15G0699 Tripterygium wilfordii HOM05D003645 ORTHO05D004395 3.1e-31 139.0 145 53.8
TAR636G1231 Trochodendron aralioides HOM05D003645 ORTHO05D004395 3.1e-31 139.0 119 58.8
Rhsim07G0081700 Rhododendron simsii HOM05D003645 ORTHO05D004395 4.1e-31 138.7 118 60.2
Aqoxy7G00085 Aquilegia oxysepala HOM05D003645 ORTHO05D004395 5.4e-31 138.3 122 57.4
Potri.001G090400 Populus trichocarpa HOM05D003645 ORTHO05D004395 5.4e-31 138.3 149 51.0
CARHR046480 Cardamine hirsuta HOM05D003645 ORTHO05D004395 7.0e-31 137.9 151 50.3
SalBow6G5928 Salvia bowleyana HOM05D003645 ORTHO05D004395 7.0e-31 137.9 119 55.5
SalBow8G5128 Salvia bowleyana HOM05D003645 ORTHO05D004395 7.0e-31 137.9 119 55.5
CsaV3_4G006680 Cucumis sativus L. HOM05D003645 ORTHO05D004395 9.1e-31 137.5 132 55.3
PSO761G0226 Papaver somniferum HOM05D003645 ORTHO05D004395 9.1e-31 137.5 141 47.5
THA.LOC104817593 Tarenaya hassleriana HOM05D003645 ORTHO05D004395 9.1e-31 137.5 156 49.4
Cpa.g.sc79.18 Carica papaya HOM05D003645 ORTHO05D004395 2.0e-30 136.3 132 53.8
Phvul.002G298900 Phaseolus vulgaris HOM05D003645 ORTHO05D004395 2.7e-30 136.0 119 57.1
Migut.E01256 Erythranthe guttata HOM05D003645 ORTHO05D004395 3.5e-30 135.6 123 53.7
Gohir.A12G237400 Gossypium hirsutum HOM05D003645 ORTHO05D004395 4.5e-30 135.2 153 51.0
Gohir.D12G238600 Gossypium hirsutum HOM05D003645 ORTHO05D004395 4.5e-30 135.2 153 51.0
Gorai.008G255500 Gossypium raimondii HOM05D003645 ORTHO05D004395 4.5e-30 135.2 153 51.0
Migut.B01875 Erythranthe guttata HOM05D003645 ORTHO05D004395 7.7e-30 134.4 128 52.3
Actinidia27314 Actinidia chinensis HOM05D003645 ORTHO05D004395 1.3e-29 133.7 134 51.5
Haze_09079 Corylus avellana HOM05D003645 ORTHO05D004395 1.3e-29 133.7 133 51.9
Haze_09080 Corylus avellana HOM05D003645 ORTHO05D004395 1.3e-29 133.7 133 51.9
VMungo0251G3746 Vigna mungo HOM05D003645 ORTHO05D004395 1.3e-29 133.7 119 56.3
MELO3C016302.2 Cucumis melo HOM05D003645 ORTHO05D004395 1.7e-29 133.3 128 53.9
Eucgr.D01751 Eucalyptus grandis HOM05D003645 ORTHO05D004395 1.7e-29 133.3 136 47.8
Prupe.5G121700 Prunus persica HOM05D003645 ORTHO05D004395 1.7e-29 133.3 147 51.7
Ciclev10022256m.g Citrus clementina HOM05D003645 ORTHO05D004395 2.3e-29 132.9 148 50.0
Gorai.003G078700 Gossypium raimondii HOM05D003645 ORTHO05D004395 2.3e-29 132.9 157 47.8
Phvul.002G165000 Phaseolus vulgaris HOM05D003645 ORTHO05D004395 2.3e-29 132.9 120 56.7
Gohir.D03G083900 Gossypium hirsutum HOM05D003645 ORTHO05D004395 2.9e-29 132.5 157 47.8
Oeu009968.1 Olea europaea HOM05D003645 ORTHO05D004395 3.8e-29 132.1 119 54.6
ClCG07G011530 Citrullus lanatus HOM05D003645 ORTHO05D004395 5.0e-29 131.7 132 53.8
CDE10G1317 Ceratophyllum demersum HOM05D003645 ORTHO05D004395 6.6e-29 131.3 130 50.0
Gohir.A02G099800 Gossypium hirsutum HOM05D003645 ORTHO05D004395 6.6e-29 131.3 157 47.1
Duzib084G0645 Durio zibethinus HOM05D003645 ORTHO05D004395 1.1e-28 130.6 147 48.3
Lj4g0007254 Lotus japonicus HOM05D003645 ORTHO05D004395 1.1e-28 130.6 141 50.4
CiPaw.12G081900 Carya illinoinensis HOM05D003645 ORTHO05D004395 1.5e-28 130.2 146 51.4
Thecc.03G299800 Theobroma cacao HOM05D003645 ORTHO05D004395 1.5e-28 130.2 152 47.4
CAN.G1804.15 Capsicum annuum HOM05D003645 ORTHO05D004395 1.9e-28 129.8 141 46.8
Lalb_Chr09g0320621 Lupinus albus HOM05D003645 ORTHO05D004395 1.9e-28 129.8 120 53.3
Cc08_g16180 Coffea canephora HOM05D003645 ORTHO05D004395 2.5e-28 129.4 141 48.9
Atru.chr9.1968 Acer truncatum HOM05D003645 ORTHO05D004395 3.3e-28 129.0 120 55.0
Duzib205G1546 Durio zibethinus HOM05D003645 ORTHO05D004395 4.2e-28 128.6 130 50.8
QL02p030173 Quercus lobata HOM05D003645 ORTHO05D004395 5.5e-28 128.3 136 50.0
Duzib068G0630 Durio zibethinus HOM05D003645 ORTHO05D004395 7.2e-28 127.9 118 53.4
Medtr5g009130 Medicago truncatula HOM05D003645 ORTHO05D004395 9.5e-28 127.5 134 50.0
Medtr8g099560 Medicago truncatula HOM05D003645 ORTHO05D004395 2.8e-27 125.9 122 52.5
PGR042G2331 Punica granatum HOM05D003645 ORTHO05D004395 3.6e-27 125.6 159 47.8
Thhalv10026760m.g Eutrema salsugineum HOM05D003645 ORTHO05D004395 4.7e-27 125.2 137 44.5
LjContig00222g0023656 Lotus japonicus HOM05D003645 ORTHO05D004395 6.1e-27 124.8 120 53.3
Glyma.05G217500 Glycine max HOM05D003645 ORTHO05D004395 3.0e-26 122.5 96 58.3
Lsat_1_v5_gn_6_83800 Lactuca sativa HOM05D003645 ORTHO05D004395 4.0e-26 122.1 118 50.8
THA.LOC104809648 Tarenaya hassleriana HOM05D003645 ORTHO05D004395 4.0e-26 122.1 119 52.9
Rhsim01G0172700 Rhododendron simsii HOM05D003645 ORTHO05D004395 5.2e-26 121.7 163 45.4
Sed0026909 Sechium edule HOM05D003645 ORTHO05D004395 5.2e-26 121.7 155 45.2
Glyma.01G226100 Glycine max HOM05D003645 ORTHO05D004395 6.8e-26 121.3 132 49.2
Sc01g0010350 Simmondsia chinensis HOM05D003645 ORTHO05D004395 8.9e-26 120.9 119 52.1
HPP92_023824 Vanilla planifolia HOM05D003645 ORTHO05D004395 8.9e-26 120.9 121 45.5
HPP92_023897 Vanilla planifolia HOM05D003645 ORTHO05D004395 8.9e-26 120.9 121 45.5
Ca_17476_v3 Cicer arietinum L. HOM05D003645 ORTHO05D004395 2.0e-25 119.8 96 57.3
PSO384G2325 Papaver somniferum HOM05D003645 ORTHO05D004395 2.0e-25 119.8 118 52.5
Sp7g21900 Schrenkiella parvula HOM05D003645 ORTHO05D004395 2.0e-25 119.8 123 46.3
CANSAT21G0134 Cannabis sativa HOM05D003645 ORTHO05D004395 2.6e-25 119.4 131 48.9
PSO135G0996 Papaver somniferum HOM05D003645 ORTHO05D004395 2.6e-25 119.4 118 52.5
Psat2g185920 Pisum sativum HOM05D003645 ORTHO05D004395 3.4e-25 119.0 120 50.0
Aa31LG6G7170 Aethionema arabicum HOM05D003645 ORTHO05D004395 5.7e-25 118.2 141 42.6
Psat7g024440 Pisum sativum HOM05D003645 ORTHO05D004395 5.7e-25 118.2 96 57.3
Sc23g0002090 Simmondsia chinensis HOM05D003645 ORTHO05D004395 9.8e-25 117.5 145 44.1
SGA_v2.0_scaffold111G31406 Striga asiatica HOM05D003645 ORTHO05D004395 9.8e-25 117.5 144 45.1
MSTRG.17346 Avicennia marina HOM05D003645 ORTHO05D004395 1.3e-24 117.1 128 48.4
TPR.G37939 Trifolium pratense HOM05D003645 ORTHO05D004395 1.7e-24 116.7 114 52.6
MD14G1129800 Malus domestica HOM05D003645 ORTHO05D004395 2.2e-24 116.3 113 53.1
AL2G10400 Arabidopsis lyrata HOM05D003645 ORTHO05D004395 4.9e-24 115.2 151 44.4
Glyma.11G016700 Glycine max HOM05D003645 ORTHO05D004395 8.3e-24 114.4 120 50.8
THA.LOC104806437 Tarenaya hassleriana HOM05D003645 ORTHO05D004395 8.3e-24 114.4 115 47.8
ATR0602G203 Amborella trichopoda HOM05D003645 ORTHO05D004395 1.1e-23 114.0 119 50.4
C07p53240 Brassica napus HOM05D003645 ORTHO05D004395 1.4e-23 113.6 121 44.6
BolC7t45819H Brassica oleracea HOM05D003645 ORTHO05D004395 1.4e-23 113.6 121 44.6
CARHR231360 Cardamine hirsuta HOM05D003645 ORTHO05D004395 1.4e-23 113.6 138 40.6
Lalb_Chr05g0224071 Lupinus albus HOM05D003645 ORTHO05D004395 1.4e-23 113.6 102 51.0
Carub.0007s1715 Capsella rubella HOM05D003645 ORTHO05D004395 3.2e-23 112.5 117 47.0
MD06G1108900 Malus domestica HOM05D003645 ORTHO05D004395 3.2e-23 112.5 116 50.0
A03p54860 Brassica napus HOM05D003645 ORTHO05D004395 4.1e-23 112.1 120 43.3
BraA03t14553Z Brassica rapa HOM05D003645 ORTHO05D004395 4.1e-23 112.1 120 43.3
BcaC09g50929 Brassica carinata HOM05D003645 ORTHO05D004395 1.2e-22 110.5 123 42.3
C01p19170 Brassica napus HOM05D003645 ORTHO05D004395 1.2e-22 110.5 123 42.3
BolC1t01843H Brassica oleracea HOM05D003645 ORTHO05D004395 1.2e-22 110.5 123 42.3
AT4G23930 Arabidopsis thaliana HOM05D003645 ORTHO05D004395 1.6e-22 110.2 115 44.3
BcaNung01100 Brassica carinata HOM05D003645 ORTHO05D004395 1.6e-22 110.2 123 43.1
Lalb_Chr09g0332361 Lupinus albus HOM05D003645 ORTHO05D004395 1.6e-22 110.2 111 47.7
A01p15240 Brassica napus HOM05D003645 ORTHO05D004395 2.0e-22 109.8 123 42.3
BraA01t01462Z Brassica rapa HOM05D003645 ORTHO05D004395 2.0e-22 109.8 123 42.3
BcaNung04245 Brassica carinata HOM05D003645 ORTHO05D004395 2.7e-22 109.4 121 43.0
BcaNung04246 Brassica carinata HOM05D003645 ORTHO05D004395 2.7e-22 109.4 121 43.0
Oeu038544.1 Olea europaea HOM05D003645 ORTHO05D004395 5.9e-22 108.2 109 51.4
ECA240G2545 Erigeron canadensis HOM05D003645 ORTHO05D004395 1.7e-21 106.7 121 46.3
AL7G29380 Arabidopsis lyrata HOM05D003645 ORTHO05D004395 2.3e-21 106.3 138 39.1
Zm00001eb119080 Zea mays HOM05D003645 ORTHO05D004395 2.5e-20 102.8 117 44.4
Ca_24497_v3 Cicer arietinum L. HOM05D003645 ORTHO05D004395 4.3e-20 102.1 90 52.2
SGA_v2.0_scaffold96G29020 Striga asiatica HOM05D003645 ORTHO05D004395 4.3e-20 102.1 151 37.7
Oeu049385.1 Olea europaea HOM05D003645 ORTHO05D004395 5.6e-20 101.7 95 55.8
Ah.12g052620 Amaranthus hybridus HOM05D003645 ORTHO05D004395 1.2e-19 100.5 133 40.6
FAN18G2610 Fragaria x ananassa HOM05D003645 ORTHO05D004395 3.6e-19 99.0 125 46.4
HPP92_008814 Vanilla planifolia HOM05D003645 ORTHO05D004395 6.1e-19 98.2 115 41.7
HanXRQChr13g0415381 Helianthus annuus HOM05D003645 ORTHO05D004395 8.9e-18 94.4 110 41.8
SEGI_37318 Sequoiadendron giganteum HOM05D003645 ORTHO05D004395 2.0e-17 93.2 127 38.6
Os01g0234700 Oryza sativa ssp. japonica HOM05D003645 ORTHO05D004395 2.6e-17 92.8 131 40.5
unitig_899.g14798 Utricularia gibba HOM05D003645 ORTHO05D004395 2.6e-17 92.8 89 47.2
Zm00001eb350300 Zea mays HOM05D003645 ORTHO05D004395 3.4e-17 92.4 92 44.6
EL10Ac5g12927 Beta vulgaris HOM05D003645 ORTHO05D004395 4.4e-17 92.0 120 43.3
Os05g0238400 Oryza sativa ssp. japonica HOM05D003645 ORTHO05D004395 1.7e-16 90.1 93 43.0
ECA240G4713 Erigeron canadensis HOM05D003645 ORTHO05D004395 2.2e-16 89.7 95 43.2
Ah.05g179520 Amaranthus hybridus HOM05D003645 ORTHO05D004395 6.4e-16 88.2 77 54.5
CDE10G0641 Ceratophyllum demersum HOM05D003645 ORTHO05D021199 1.1e-15 87.4 84 52.4
AUR62004497 Chenopodium quinoa HOM05D003645 ORTHO05D004395 5.0e-13 78.6 77 49.4
AUR62023456 Chenopodium quinoa HOM05D003645 ORTHO05D004395 5.0e-13 78.6 77 49.4
Actinidia22734 Actinidia chinensis HOM05D003645 ORTHO05D004395 7.3e-12 74.7 107 41.1
SHI06963 Sapria himalayana HOM05D003645 ORTHO05D004395 2.6e-09 66.2 109 33.0
SEGI_21261 Sequoiadendron giganteum HOM05D003645 ORTHO05D004395 3.4e-09 65.9 89 34.8
Pp3c9_12490 Physcomitrium patens HOM05D000172 ORTHO05D000273 7.1e-07 58.2 105 26.7
Aa31LG11G12460 Aethionema arabicum HOM05D000172 ORTHO05D000273 9.2e-07 57.8 109 33.9


User provided reference genes

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