Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.4e-129 466.5 264 100.0
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 2.3e-92 342.8 272 73.5
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.5e-67 260.4 272 60.7
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.0e-63 247.7 277 59.6
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 2.3e-63 246.5 275 57.8
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 5.6e-62 241.9 275 57.1
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.8e-60 236.9 273 57.5
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 3.4e-59 232.6 275 54.9
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.7e-58 230.3 282 54.6
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 6.0e-56 221.9 279 53.8
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 1.0e-55 221.1 252 55.2
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 3.9e-55 219.2 267 53.2
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 3.9e-55 219.2 327 48.9
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 5.1e-55 218.8 267 53.2
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 2.5e-54 216.5 267 52.8
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 5.6e-54 215.3 275 52.7
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 5.6e-54 215.3 278 51.8
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 9.5e-54 214.5 281 50.5
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 6.2e-53 211.8 311 49.5
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 8.1e-53 211.5 279 52.3
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 1.8e-52 210.3 273 51.3
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 5.8e-51 205.3 271 50.2
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 7.6e-51 204.9 275 51.3
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 7.6e-51 204.9 275 51.3
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.3e-50 204.1 376 42.3
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 8.4e-50 201.4 280 51.4
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.1e-49 201.1 218 60.1
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 3.2e-49 199.5 280 50.7
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 2.7e-48 196.4 271 50.6
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 7.8e-48 194.9 274 51.8
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 1.7e-47 193.7 268 50.0
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 2.3e-47 193.4 251 53.0
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 3.0e-47 193.0 271 48.0
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 3.0e-47 193.0 275 49.5
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 3.9e-47 192.6 245 53.9
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 6.6e-47 191.8 269 49.1
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 8.6e-47 191.4 389 40.1
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 9.6e-46 188.0 254 52.4
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 1.2e-45 187.6 271 48.0
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 1.6e-45 187.2 243 54.3
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 2.1e-45 186.8 264 50.0
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 2.1e-45 186.8 227 53.3
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.8e-45 186.4 252 51.2
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 3.6e-45 186.0 277 47.7
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 3.6e-45 186.0 243 54.3
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 4.7e-45 185.7 265 49.4
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 6.2e-45 185.3 243 53.9
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 8.1e-45 184.9 264 49.6
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 8.9e-44 181.4 247 56.3
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.2e-43 181.0 269 47.6
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 3.4e-43 179.5 274 46.7
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 7.6e-43 178.3 276 46.0
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 7.6e-43 178.3 274 47.8
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 9.9e-43 177.9 217 54.4
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 2.2e-42 176.8 283 45.6
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.4e-41 174.1 278 46.0
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 1.4e-41 174.1 277 45.1
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 2.7e-40 169.9 280 44.3
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 4.6e-40 169.1 274 44.9
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 1.1e-38 164.5 248 47.2
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 1.1e-38 164.5 279 43.7
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.5e-38 163.3 228 56.6
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 2.5e-38 163.3 212 53.8
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 5.6e-38 162.2 218 52.8
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 5.6e-38 162.2 218 52.8
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 2.8e-37 159.8 262 44.7
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.8e-37 159.8 262 44.7
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 2.8e-37 159.8 225 49.8
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 4.8e-37 159.1 274 44.2
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.4e-36 157.5 256 44.9
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 6.9e-36 155.2 281 41.6
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.6e-35 153.3 272 41.9
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 4.5e-35 152.5 273 42.9
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 5.8e-35 152.1 226 45.1
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 5.8e-35 152.1 226 45.1
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 6.4e-34 148.7 278 43.5
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 8.4e-34 148.3 143 59.4
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 3.2e-33 146.4 269 39.8
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 5.4e-33 145.6 187 47.6
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 7.1e-33 145.2 229 45.0
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.2e-32 144.4 269 39.4
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 3.5e-32 142.9 194 52.1
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 4.6e-32 142.5 204 48.5
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.3e-31 141.0 269 39.0
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.7e-31 140.6 269 40.1
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 2.3e-31 140.2 291 39.2
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.3e-31 140.2 254 44.5
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 3.3e-30 136.3 177 49.7
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 1.3e-29 134.4 278 39.2
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 2.1e-29 133.7 268 38.4
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.6e-29 132.9 270 39.3
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.4e-28 131.0 254 38.2
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 1.8e-28 130.6 287 43.9
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 4.0e-28 129.4 186 44.6
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.0e-28 129.4 275 40.0
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 5.3e-28 129.0 270 44.1
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.5e-27 127.5 257 37.0
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 2.6e-27 126.7 276 37.7
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 5.8e-27 125.6 288 43.1
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 5.8e-27 125.6 242 44.6
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 7.6e-27 125.2 237 37.6
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 1.3e-26 124.4 266 39.5
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 1.7e-26 124.0 279 36.6
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 2.2e-26 123.6 142 50.7
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 2.2e-26 123.6 268 36.9
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 3.8e-26 122.9 214 43.0
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.1e-25 121.3 269 39.8
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 1.9e-25 120.6 181 43.6
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 5.5e-25 119.0 280 36.8
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 1.0e-23 114.8 270 37.0
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.3e-23 114.4 138 50.7
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 1.3e-23 114.4 343 31.8
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.8e-23 114.0 295 35.3
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 3.0e-23 113.2 302 35.4
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 6.7e-23 112.1 152 44.1
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 6.7e-23 112.1 135 51.1
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 5.6e-22 109.0 141 48.2
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.8e-20 104.0 217 35.5
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 6.9e-20 102.1 164 46.3
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.2e-19 101.3 258 35.7
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.2e-19 101.3 283 33.2
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 2.6e-19 100.1 135 43.7
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 4.5e-19 99.4 83 66.3
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 7.6e-19 98.6 153 41.8
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 1.7e-18 97.4 260 33.5
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 2.9e-18 96.7 108 44.4
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 3.8e-18 96.3 257 34.2
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 8.4e-18 95.1 135 42.2
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 1.9e-17 94.0 124 44.4
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 2.7e-16 90.1 135 45.9
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 3.5e-16 89.7 257 34.6
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 4.6e-16 89.4 158 39.2
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.3e-15 87.8 135 44.4
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.8e-15 87.4 207 35.3
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 3.9e-15 86.3 125 43.2
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 5.7e-14 82.4 184 34.2
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 2.1e-13 80.5 89 50.6
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 4.1e-12 76.3 203 34.0
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 3.8e-10 69.7 54 63.0
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 1.1e-09 68.2 84 46.4
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 1.9e-09 67.4 120 43.3
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.2e-08 64.7 98 50.0
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 1.2e-08 64.7 69 46.4
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 1.1e-06 58.2 71 45.1


User provided reference genes

Program Settings