Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0136961 Helianthus annuus HOM05D007791 ORTHO05D000653 2.7e-39 164.9 82 100.0
ECA248G2888 Erigeron canadensis HOM05D007791 ORTHO05D000653 1.2e-26 122.9 81 75.3
Lsat_1_v5_gn_5_153840 Lactuca sativa HOM05D007791 ORTHO05D000653 1.1e-24 116.3 80 70.0
Psat1g089000 Pisum sativum HOM05D007791 ORTHO05D000653 9.3e-16 86.7 64 62.5
Nitab4.5_0007505g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 1.2e-15 86.3 67 61.2
Solyc06g069400.4 Solanum lycopersicum HOM05D002101 ORTHO05D002126 1.6e-15 85.9 67 61.2
TAR623G1446 Trochodendron aralioides HOM05D007791 ORTHO05D000653 1.6e-15 85.9 64 62.5
Peaxi162Scf00013g00738 Petunia axillaris HOM05D007791 ORTHO05D000653 2.1e-15 85.5 83 53.0
PGSC0003DMG400004064 Solanum tuberosum HOM05D007791 ORTHO05D000653 2.1e-15 85.5 67 61.2
Cpa.g.sc228.1 Carica papaya HOM05D007791 ORTHO05D000653 3.5e-15 84.7 64 64.1
Dinv37146 Davidia involucrata HOM05D007791 ORTHO05D000653 3.5e-15 84.7 64 60.9
Manes.09G094800 Manihot esculenta HOM05D007791 ORTHO05D000653 3.5e-15 84.7 82 53.7
Nitab4.5_0002449g0040 Nicotiana tabacum HOM05D002101 ORTHO05D002126 4.6e-15 84.3 86 51.2
Sopen06g026680 Solanum pennellii HOM05D007791 ORTHO05D000653 7.9e-15 83.6 67 59.7
CSS0008915 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 1.0e-14 83.2 64 59.4
Atru.chr8.2026 Acer truncatum HOM05D007791 ORTHO05D000653 1.8e-14 82.4 64 57.8
Oeu006881.1 Olea europaea HOM05D007791 ORTHO05D000653 2.3e-14 82.0 64 57.8
Atru.chr8.2017 Acer truncatum HOM05D007791 ORTHO05D000653 3.0e-14 81.6 94 45.7
TPR.G3886 Trifolium pratense HOM05D007791 ORTHO05D000653 3.0e-14 81.6 99 46.5
PSO063G1561 Papaver somniferum HOM05D007791 ORTHO05D000653 3.9e-14 81.3 84 53.6
Zm00001eb138720 Zea mays HOM05D007791 ORTHO05D000653 3.9e-14 81.3 72 51.4
CSS0023434 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 5.1e-14 80.9 92 51.1
CSS0036268 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 5.1e-14 80.9 92 51.1
Phvul.005G032000 Phaseolus vulgaris HOM05D007791 ORTHO05D000653 6.7e-14 80.5 64 59.4
TPR.G35313 Trifolium pratense HOM05D007791 ORTHO05D000653 6.7e-14 80.5 89 47.2
COL.COLO4_14751 Corchorus olitorius HOM05D007791 ORTHO05D000653 1.1e-13 79.7 64 60.9
Potri.006G088664 Populus trichocarpa HOM05D007791 ORTHO05D000653 1.5e-13 79.3 67 58.2
PGR031G1849 Punica granatum HOM05D007791 ORTHO05D000653 1.5e-13 79.3 66 57.6
CAN.G587.57 Capsicum annuum HOM05D007791 ORTHO05D000653 1.9e-13 79.0 67 56.7
Cc04_g14510 Coffea canephora HOM05D007791 ORTHO05D000653 1.9e-13 79.0 85 50.6
DCAR_010421 Daucus carota HOM05D007791 ORTHO05D000653 2.5e-13 78.6 91 45.1
Potri.006G088500 Populus trichocarpa HOM05D007791 ORTHO05D000653 2.5e-13 78.6 99 44.4
Potri.006G088616 Populus trichocarpa HOM05D007791 ORTHO05D000653 2.5e-13 78.6 99 44.4
Potri.006G088700 Populus trichocarpa HOM05D007791 ORTHO05D000653 2.5e-13 78.6 67 56.7
GSVIVG01034125001 Vitis vinifera HOM05D007791 ORTHO05D000653 4.3e-13 77.8 64 56.2
Glyma.11G151000 Glycine max HOM05D007791 ORTHO05D000653 7.4e-13 77.0 99 47.5
Medtr3g020970 Medicago truncatula HOM05D007791 ORTHO05D000653 7.4e-13 77.0 99 45.5
Duzib106G0736 Durio zibethinus HOM05D007791 ORTHO05D000653 1.3e-12 76.3 64 54.7
Ciclev10013177m.g Citrus clementina HOM05D007791 ORTHO05D000653 1.6e-12 75.9 61 60.7
Duzib106G0108 Durio zibethinus HOM05D007791 ORTHO05D000653 1.6e-12 75.9 64 56.2
Thecc.05G034600 Theobroma cacao HOM05D007791 ORTHO05D000653 2.8e-12 75.1 64 56.2
TPR.G3882 Trifolium pratense HOM05D007791 ORTHO05D000653 3.7e-12 74.7 97 45.4
Gohir.D04G122900 Gossypium hirsutum HOM05D007791 ORTHO05D000653 6.2e-12 73.9 64 54.7
Lj3g0002224 Lotus japonicus HOM05D007791 ORTHO05D000653 6.2e-12 73.9 65 55.4
Gohir.A04G084100 Gossypium hirsutum HOM05D007791 ORTHO05D000653 8.2e-12 73.6 64 54.7
Gorai.012G105800 Gossypium raimondii HOM05D007791 ORTHO05D000653 1.1e-11 73.2 64 53.1
Migut.J00302 Erythranthe guttata HOM05D007791 ORTHO05D000653 1.4e-11 72.8 80 46.2
arahy.Tifrunner.gnm1.ann1.0A2T8K Arachis hypogaea HOM05D007791 ORTHO05D000653 3.1e-11 71.6 89 42.7
ATR0559G001 Amborella trichopoda HOM05D007791 ORTHO05D000653 6.9e-11 70.5 77 48.1
Eucgr.A01291 Eucalyptus grandis HOM05D007791 ORTHO05D000653 9.0e-11 70.1 66 53.0
Medtr3g020930 Medicago truncatula HOM05D007791 ORTHO05D000653 9.0e-11 70.1 67 52.2
Thecc.05G034800 Theobroma cacao HOM05D007791 ORTHO05D000653 2.6e-10 68.6 64 51.6
Nitab4.5_0007505g0030 Nicotiana tabacum HOM05D007791 ORTHO05D000653 3.4e-10 68.2 62 46.8
TWI74G0823 Tripterygium wilfordii HOM05D007791 ORTHO05D000653 4.5e-10 67.8 87 46.0
Aqoxy1G00874 Aquilegia oxysepala HOM05D007791 ORTHO05D000653 5.8e-10 67.4 88 42.0
arahy.Tifrunner.gnm1.ann1.NKRP5F Arachis hypogaea HOM05D007791 ORTHO05D000653 5.8e-10 67.4 89 42.7
CsaV3_4G025200 Cucumis sativus L. HOM05D007791 ORTHO05D000653 1.7e-09 65.9 91 42.9
Duzib106G1185 Durio zibethinus HOM05D007791 ORTHO05D000653 1.7e-09 65.9 56 58.9
Medtr3g020800 Medicago truncatula HOM05D007791 ORTHO05D000653 1.7e-09 65.9 64 50.0
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 5.0e-09 64.3 66 45.5
Rhsim05G0195200 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.1e-08 63.2 66 50.0
vmacro08656 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 1.1e-08 63.2 65 49.2
Os12g0548401 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.4e-08 62.8 65 50.8
Pp3c23_22180 Physcomitrium patens HOM05D007791 ORTHO05D000653 1.9e-08 62.4 61 47.5
vmacro08637 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 1.9e-08 62.4 63 49.2
Medtr3g020880 Medicago truncatula HOM05D007791 ORTHO05D000653 3.2e-08 61.6 88 44.3
Rhsim05G0195400 Rhododendron simsii HOM05D007791 ORTHO05D000653 4.2e-08 61.2 92 41.3
HPP92_019238 Vanilla planifolia HOM05D007791 ORTHO05D000653 4.2e-08 61.2 61 49.2
Os12g0548700 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 5.5e-08 60.8 64 50.0
SEGI_12735 Sequoiadendron giganteum HOM05D007791 ORTHO05D000653 5.5e-08 60.8 82 41.5
Hund02894 Selenicereus undatus HOM05D001004 ORTHO05D000653 7.1e-08 60.5 79 44.3
SEGI_18954 Sequoiadendron giganteum HOM05D001004 ORTHO05D000653 9.3e-08 60.1 65 44.6
Thecc.10G077500 Theobroma cacao HOM05D001004 ORTHO05D000653 9.3e-08 60.1 64 43.8
Thecc.10G077900 Theobroma cacao HOM05D001004 ORTHO05D000653 9.3e-08 60.1 64 43.8
CBR_g37573 Chara braunii HOM05D007791 ORTHO05D000653 1.2e-07 59.7 66 43.9
HPP92_012980 Vanilla planifolia HOM05D007791 ORTHO05D000653 1.2e-07 59.7 84 38.1
Thecc.10G077800 Theobroma cacao HOM05D001004 ORTHO05D000653 1.6e-07 59.3 64 43.8
Thecc.10G078200 Theobroma cacao HOM05D001004 ORTHO05D000653 1.6e-07 59.3 64 45.3
HPP92_019239 Vanilla planifolia HOM05D007791 ORTHO05D000653 2.1e-07 58.9 64 42.2
Medtr1g070335 Medicago truncatula HOM05D001004 ORTHO05D000653 2.7e-07 58.5 64 42.2
Thecc.10G078300 Theobroma cacao HOM05D001004 ORTHO05D000653 2.7e-07 58.5 64 40.6
Oeu002604.1 Olea europaea HOM05D001004 ORTHO05D000653 4.6e-07 57.8 64 42.2
Rhsim05G0195100 Rhododendron simsii HOM05D007791 ORTHO05D000653 4.6e-07 57.8 66 47.0
Thecc.10G077700 Theobroma cacao HOM05D001004 ORTHO05D000653 4.6e-07 57.8 64 42.2
Lj5g0010722 Lotus japonicus HOM05D001004 ORTHO05D000653 6.1e-07 57.4 64 42.2
Sed0001135 Sechium edule HOM05D001004 ORTHO05D000653 6.1e-07 57.4 67 44.8
Zm00001eb267000 Zea mays HOM05D007791 ORTHO05D000653 6.1e-07 57.4 64 46.9
HanXRQChr01g0014531 Helianthus annuus HOM05D001004 ORTHO05D000653 7.9e-07 57.0 69 43.5
Nn3g18475 Nelumbo nucifera HOM05D001004 ORTHO05D000653 7.9e-07 57.0 64 43.8
Thecc.10G078100 Theobroma cacao HOM05D001004 ORTHO05D000653 7.9e-07 57.0 64 42.2
Zm00001eb355990 Zea mays HOM05D007791 ORTHO05D000653 1.0e-06 56.6 64 46.9
FvH4_4g02940 Fragaria vesca HOM05D001004 ORTHO05D000653 1.3e-06 56.2 69 40.6
Lsat_1_v5_gn_5_153860 Lactuca sativa HOM05D007791 ORTHO05D000653 1.3e-06 56.2 80 46.2
Nn3g19560 Nelumbo nucifera HOM05D001004 ORTHO05D000653 1.8e-06 55.8 64 42.2
Os12g0437800 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.8e-06 55.8 66 45.5
Peaxi162Scf00325g00711 Petunia axillaris HOM05D001004 ORTHO05D000653 1.8e-06 55.8 64 40.6
Phvul.009G203600 Phaseolus vulgaris HOM05D001004 ORTHO05D000653 1.8e-06 55.8 64 42.2
CANSAT78G0302 Cannabis sativa HOM05D001004 ORTHO05D000653 2.3e-06 55.5 65 43.1
TAR636G3448 Trochodendron aralioides HOM05D001004 ORTHO05D000653 2.3e-06 55.5 64 42.2
CiPaw.01G189700 Carya illinoinensis HOM05D001004 ORTHO05D000653 3.0e-06 55.1 64 42.2
Haze_24569 Corylus avellana HOM05D001004 ORTHO05D000653 3.0e-06 55.1 71 42.3
MD13G1208800 Malus domestica HOM05D001004 ORTHO05D000653 3.0e-06 55.1 69 39.1
RcHm_v2.0_Chr4g0390821 Rosa chinensis HOM05D001004 ORTHO05D000653 3.0e-06 55.1 64 39.1
GSVIVG01018137001 Vitis vinifera HOM05D001004 ORTHO05D000653 3.0e-06 55.1 65 41.5
Zm00001eb267010 Zea mays HOM05D007791 ORTHO05D000653 3.0e-06 55.1 65 44.6
Ciclev10007070m.g Citrus clementina HOM05D001004 ORTHO05D000653 3.9e-06 54.7 64 37.5
Ciclev10007123m.g Citrus clementina HOM05D001004 ORTHO05D000653 3.9e-06 54.7 64 37.5
Dinv44643 Davidia involucrata HOM05D001004 ORTHO05D000653 3.9e-06 54.7 64 40.6
Medtr5g090250 Medicago truncatula HOM05D001004 ORTHO05D000653 3.9e-06 54.7 64 42.2
CSS0013364 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 5.1e-06 54.3 64 42.2
GSVIVG01018139001 Vitis vinifera HOM05D001004 ORTHO05D000653 5.1e-06 54.3 65 41.5
Gohir.D11G134300 Gossypium hirsutum HOM05D001004 ORTHO05D000653 6.7e-06 53.9 65 40.0
Medtr5g045470 Medicago truncatula HOM05D001004 ORTHO05D000653 6.7e-06 53.9 64 42.2
Prupe.1G032900 Prunus persica HOM05D001004 ORTHO05D000653 6.7e-06 53.9 64 40.6
FAN17G1223 Fragaria x ananassa HOM05D001004 ORTHO05D000653 8.7e-06 53.5 69 39.1
RcHm_v2.0_Chr4g0391001 Rosa chinensis HOM05D001004 ORTHO05D000653 8.7e-06 53.5 67 38.8
SMO351G0292 Selaginella moellendorffii HOM05D007791 ORTHO05D000653 8.7e-06 53.5 65 41.5


User provided reference genes

Program Settings