Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0136031 Helianthus annuus HOM05D004995 ORTHO05D006034 8.0e-134 480.3 226 100.0
HanXRQChr15g0464181 Helianthus annuus HOM05D004995 ORTHO05D006034 5.3e-130 467.6 224 96.9
HanXRQChr06g0167831 Helianthus annuus HOM05D004995 ORTHO05D006034 2.5e-111 405.6 223 83.9
ECA236G3500 Erigeron canadensis HOM05D004995 ORTHO05D006034 2.6e-108 395.6 223 80.7
Lsat_1_v5_gn_8_165441 Lactuca sativa HOM05D004995 ORTHO05D006034 7.8e-105 384.0 233 77.7
Oeu047387.1 Olea europaea HOM05D004995 ORTHO05D006034 6.4e-99 364.4 208 76.9
Glyma.02G013500 Glycine max HOM05D004995 ORTHO05D006034 6.0e-97 357.8 226 72.1
CiPaw.07G116000 Carya illinoinensis HOM05D004995 ORTHO05D006034 1.0e-96 357.1 225 71.1
Glyma.10G014100 Glycine max HOM05D004995 ORTHO05D006034 1.7e-96 356.3 229 70.7
vmacro15117 Vaccinium macrocarpon HOM05D004995 ORTHO05D006034 1.7e-96 356.3 228 70.2
Lj5g0006877 Lotus japonicus HOM05D004995 ORTHO05D006034 3.9e-96 355.1 225 70.2
GSVIVG01028102001 Vitis vinifera HOM05D004995 ORTHO05D006034 5.1e-96 354.8 236 70.8
arahy.Tifrunner.gnm1.ann1.KJ11SU Arachis hypogaea HOM05D004995 ORTHO05D006034 6.6e-96 354.4 225 72.4
CSS0012776 Camellia sinensis var. sinensis HOM05D004995 ORTHO05D006034 1.1e-95 353.6 229 72.5
Cfa005817 Carpinus fangiana HOM05D004995 ORTHO05D006034 1.1e-95 353.6 228 69.7
Duzib138G1673 Durio zibethinus HOM05D004995 ORTHO05D006034 1.1e-95 353.6 233 70.0
CSS0035665 Camellia sinensis var. sinensis HOM05D004995 ORTHO05D006034 1.5e-95 353.2 229 72.5
COL.COLO4_23251 Corchorus olitorius HOM05D004995 ORTHO05D006034 3.3e-95 352.1 234 69.2
Actinidia25841 Actinidia chinensis HOM05D004995 ORTHO05D006034 4.3e-95 351.7 226 69.0
Gorai.008G140900 Gossypium raimondii HOM05D004995 ORTHO05D006034 7.3e-95 350.9 228 70.2
Ciclev10024590m.g Citrus clementina HOM05D004995 ORTHO05D006034 1.6e-94 349.7 208 75.0
Medtr1g087290 Medicago truncatula HOM05D004995 ORTHO05D006034 1.6e-94 349.7 235 70.2
Gohir.D12G129700 Gossypium hirsutum HOM05D004995 ORTHO05D006034 2.1e-94 349.4 228 69.7
Cc02_g27310 Coffea canephora HOM05D004995 ORTHO05D006034 2.8e-94 349.0 224 70.1
RcHm_v2.0_Chr7g0241761 Rosa chinensis HOM05D004995 ORTHO05D006034 3.6e-94 348.6 241 68.5
Dinv10081 Davidia involucrata HOM05D004995 ORTHO05D006034 4.7e-94 348.2 227 70.9
Gohir.A12G126200 Gossypium hirsutum HOM05D004995 ORTHO05D006034 4.7e-94 348.2 228 69.3
Lalb_Chr02g0146751 Lupinus albus HOM05D004995 ORTHO05D006034 4.7e-94 348.2 230 67.8
Prupe.8G270500 Prunus persica HOM05D004995 ORTHO05D006034 6.2e-94 347.8 227 70.0
FvH4_5g39450 Fragaria vesca HOM05D004995 ORTHO05D006034 8.1e-94 347.4 237 69.2
FAN04G1561 Fragaria x ananassa HOM05D004995 ORTHO05D006034 1.8e-93 346.3 237 68.4
FAN18G1671 Fragaria x ananassa HOM05D004995 ORTHO05D006034 1.8e-93 346.3 237 69.2
Phvul.007G215300 Phaseolus vulgaris HOM05D004995 ORTHO05D006034 1.8e-93 346.3 225 70.2
VMungo0720G1458 Vigna mungo HOM05D004995 ORTHO05D006034 2.3e-93 345.9 227 69.6
EL10As5g23507 Beta vulgaris HOM05D004995 ORTHO05D006034 3.1e-93 345.5 231 69.3
Thecc.01G311300 Theobroma cacao HOM05D004995 ORTHO05D006034 3.1e-93 345.5 234 68.8
Ca_10292_v3 Cicer arietinum L. HOM05D004995 ORTHO05D006034 5.2e-93 344.7 230 70.0
Ca_30263_v3 Cicer arietinum L. HOM05D004995 ORTHO05D006034 5.2e-93 344.7 230 70.0
SGA_v2.0_scaffold376G50269 Striga asiatica HOM05D004995 ORTHO05D006034 6.8e-93 344.4 223 71.7
Ah.11g049350 Amaranthus hybridus HOM05D004995 ORTHO05D006034 8.9e-93 344.0 211 73.5
Nn3g21651 Nelumbo nucifera HOM05D004995 ORTHO05D006034 8.9e-93 344.0 226 70.4
Migut.D00092 Erythranthe guttata HOM05D004995 ORTHO05D006034 1.5e-92 343.2 230 69.6
FAN13G2181 Fragaria x ananassa HOM05D004995 ORTHO05D006034 1.5e-92 343.2 237 68.4
MBI18_g28452_MAGBIO Magnolia biondii HOM05D004995 ORTHO05D006034 1.5e-92 343.2 224 71.4
Manes.01G226600 Manihot esculenta HOM05D004995 ORTHO05D006034 3.4e-92 342.0 225 67.6
TPR.G19766 Trifolium pratense HOM05D004995 ORTHO05D006034 4.4e-92 341.7 229 68.6
AUR62024673 Chenopodium quinoa HOM05D004995 ORTHO05D006034 7.6e-92 340.9 212 71.7
AUR62011830 Chenopodium quinoa HOM05D004995 ORTHO05D006034 1.3e-91 340.1 211 71.1
Rhsim01G0290000 Rhododendron simsii HOM05D004995 ORTHO05D006034 1.3e-91 340.1 223 69.1
MD03G1296700 Malus domestica HOM05D004995 ORTHO05D006034 1.7e-91 339.7 232 65.5
Potri.014G122400 Populus trichocarpa HOM05D004995 ORTHO05D006034 2.2e-91 339.3 223 68.6
Atru.chr5.1036 Acer truncatum HOM05D004995 ORTHO05D006034 2.9e-91 339.0 226 67.3
CANSAT25G2589 Cannabis sativa HOM05D004995 ORTHO05D006034 3.7e-91 338.6 227 69.2
Hund09619 Selenicereus undatus HOM05D004995 ORTHO05D006034 3.7e-91 338.6 226 69.9
TWI75G0138 Tripterygium wilfordii HOM05D004995 ORTHO05D006034 4.9e-91 338.2 234 68.4
QL12p020317 Quercus lobata HOM05D004995 ORTHO05D006034 6.4e-91 337.8 229 67.2
Sc24g0003210 Simmondsia chinensis HOM05D004995 ORTHO05D006034 6.4e-91 337.8 232 69.8
Cpa.g.sc18.23 Carica papaya HOM05D004995 ORTHO05D006034 1.4e-90 336.7 227 67.8
CsaV3_7G029870 Cucumis sativus L. HOM05D004995 ORTHO05D006034 3.2e-90 335.5 226 67.3
Sabra14G0090800 Salix brachista HOM05D004995 ORTHO05D006034 5.4e-90 334.7 223 66.8
Eucgr.K03537 Eucalyptus grandis HOM05D004995 ORTHO05D006034 9.2e-90 334.0 231 64.9
MD11G1316200 Malus domestica HOM05D004995 ORTHO05D006034 1.2e-89 333.6 231 64.9
MELO3C015934.2 Cucumis melo HOM05D004995 ORTHO05D006034 2.7e-89 332.4 226 66.4
Sed0026389 Sechium edule HOM05D004995 ORTHO05D006034 7.8e-89 330.9 226 66.8
DCAR_012367 Daucus carota HOM05D004995 ORTHO05D006034 1.0e-88 330.5 242 63.2
Aa31LG5G1780 Aethionema arabicum HOM05D004995 ORTHO05D006034 1.3e-88 330.1 235 64.3
Psat6g162360 Pisum sativum HOM05D004995 ORTHO05D006034 3.9e-88 328.6 232 65.5
THA.LOC104825943 Tarenaya hassleriana HOM05D004995 ORTHO05D006034 1.5e-87 326.6 223 65.9
Potri.002G197400 Populus trichocarpa HOM05D004995 ORTHO05D006034 3.3e-87 325.5 227 66.5
PSO170G6821 Papaver somniferum HOM05D004995 ORTHO05D006034 5.6e-87 324.7 237 63.7
Haze_05021 Corylus avellana HOM05D004995 ORTHO05D006034 9.6e-87 323.9 223 67.3
Haze_05025 Corylus avellana HOM05D004995 ORTHO05D006034 9.6e-87 323.9 223 67.3
PSO357G0286 Papaver somniferum HOM05D004995 ORTHO05D006034 8.1e-86 320.9 237 62.9
Solyc06g009680.4 Solanum lycopersicum HOM05D004995 ORTHO05D006034 1.4e-85 320.1 225 65.3
Sopen06g004320 Solanum pennellii HOM05D004995 ORTHO05D006034 1.8e-85 319.7 223 65.5
Aqoxy5G04290 Aquilegia oxysepala HOM05D004995 ORTHO05D006034 3.1e-85 318.9 226 65.0
CAN.G1280.22 Capsicum annuum HOM05D004995 ORTHO05D006034 5.2e-85 318.2 225 65.3
Sabra02G0160100 Salix brachista HOM05D004995 ORTHO05D006034 6.8e-85 317.8 226 65.5
CDE09G0507 Ceratophyllum demersum HOM05D004995 ORTHO05D006034 3.4e-84 315.5 222 62.6
PGR044G2031 Punica granatum HOM05D004995 ORTHO05D006034 4.4e-84 315.1 223 64.6
Nitab4.5_0000363g0330 Nicotiana tabacum HOM05D004995 ORTHO05D006034 5.8e-84 314.7 224 64.7
Peaxi162Scf00058g03010 Petunia axillaris HOM05D004995 ORTHO05D006034 9.9e-84 313.9 225 64.9
unitig_90.g27435 Utricularia gibba HOM05D004995 ORTHO05D006034 1.3e-83 313.5 210 70.0
Nitab4.5_0006144g0040 Nicotiana tabacum HOM05D004995 ORTHO05D006034 4.9e-83 311.6 225 63.6
Lj1A19G23 Lonicera japonica HOM05D004995 ORTHO05D006034 3.2e-82 308.9 229 63.3
Actinidia21007 Actinidia chinensis HOM05D004995 ORTHO05D006034 9.3e-82 307.4 193 72.0
ATR0706G147 Amborella trichopoda HOM05D004995 ORTHO05D006034 1.3e-80 303.5 212 66.5
DCAR_005771 Daucus carota HOM05D004995 ORTHO05D006034 3.3e-79 298.9 240 61.2
SHI20082 Sapria himalayana HOM05D004995 ORTHO05D006034 7.3e-79 297.7 217 61.3
Dinv33107 Davidia involucrata HOM05D004995 ORTHO05D006034 2.6e-76 289.3 192 71.4
Os03g0304400 Oryza sativa ssp. japonica HOM05D004995 ORTHO05D006034 7.6e-76 287.7 226 58.0
Zm00001eb014460 Zea mays HOM05D004995 ORTHO05D006034 1.7e-72 276.6 211 59.2
SEGI_38340 Sequoiadendron giganteum HOM05D004995 ORTHO05D006034 4.3e-71 271.9 238 54.2
Oeu008461.1 Olea europaea HOM05D004995 ORTHO05D006034 8.4e-67 257.7 149 76.5
HPP92_002052 Vanilla planifolia HOM05D004995 ORTHO05D006034 2.7e-65 252.7 187 65.2
Peaxi162Scf00001g10213 Petunia axillaris HOM05D004995 ORTHO05D006034 1.3e-59 233.8 161 67.7
BolC3t16092H Brassica oleracea HOM05D004995 ORTHO05D006034 4.9e-59 231.9 141 71.6
C03p38070 Brassica napus HOM05D004995 ORTHO05D006034 6.5e-59 231.5 136 73.5
A03p31220 Brassica napus HOM05D004995 ORTHO05D006034 8.4e-59 231.1 141 70.9
BraA03t12302Z Brassica rapa HOM05D004995 ORTHO05D006034 8.4e-59 231.1 141 70.9
Sp6g02000 Schrenkiella parvula HOM05D004995 ORTHO05D006034 1.4e-58 230.3 141 70.9
BcaB01g02426 Brassica carinata HOM05D004995 ORTHO05D006034 1.9e-58 229.9 141 71.6
PGSC0003DMG400009006 Solanum tuberosum HOM05D004995 ORTHO05D006034 1.9e-58 229.9 147 71.4
BcaC01g06775 Brassica carinata HOM05D004995 ORTHO05D006034 2.5e-58 229.6 141 70.9
AT4G02110 Arabidopsis thaliana HOM05D004995 ORTHO05D006034 3.2e-58 229.2 141 70.2
CARHR250290 Cardamine hirsuta HOM05D004995 ORTHO05D006034 3.2e-58 229.2 144 68.1
AL6G51110 Arabidopsis lyrata HOM05D004995 ORTHO05D006034 3.5e-57 225.7 140 69.3
Thhalv10028365m.g Eutrema salsugineum HOM05D004995 ORTHO05D006034 6.0e-57 224.9 143 68.5
Nitab4.5_0001301g0150 Nicotiana tabacum HOM05D004995 ORTHO05D006034 1.0e-56 224.2 145 69.0
Carub.0006s3511 Capsella rubella HOM05D004995 ORTHO05D006034 1.3e-56 223.8 137 69.3
CAN.G362.42 Capsicum annuum HOM05D004995 ORTHO05D006034 1.8e-56 223.4 152 67.1
Mapoly0010s0152 Marchantia polymorpha HOM05D004995 ORTHO05D006034 5.7e-55 218.4 222 46.4
Nitab4.5_0013957g0010 Nicotiana tabacum HOM05D004995 ORTHO05D006034 2.1e-54 216.5 147 66.0
AagrBONN_evm.TU.Sc2ySwM_368.2357 Anthoceros agrestis HOM05D004995 ORTHO05D006034 5.3e-53 211.8 246 43.9
CBR_g29774 Chara braunii HOM05D004995 ORTHO05D006034 5.0e-51 205.3 225 44.0
FAN08G3258 Fragaria x ananassa HOM05D004995 ORTHO05D006034 1.0e-48 197.6 107 82.2
TAR633G1331 Trochodendron aralioides HOM05D004995 ORTHO05D006034 1.6e-46 190.3 139 64.7
SMO367G0571 Selaginella moellendorffii HOM05D004995 ORTHO05D006034 3.7e-46 189.1 224 43.3
Aa31LG5G1760 Aethionema arabicum HOM05D004995 ORTHO05D006034 4.4e-31 139.0 134 50.7
TAR633G0044 Trochodendron aralioides HOM05D004995 ORTHO05D006034 5.3e-29 132.1 70 84.3
Zm00001eb333180 Zea mays HOM05D004995 ORTHO05D006034 1.1e-18 97.8 63 69.8
Zm00001eb309400 Zea mays HOM05D004995 ORTHO05D006034 4.2e-18 95.9 63 68.3
arahy.Tifrunner.gnm1.ann1.SI6M6S Arachis hypogaea HOM05D004995 ORTHO05D006034 1.1e-13 81.3 44 72.7
Zm00001eb331400 Zea mays HOM05D004995 ORTHO05D006034 7.2e-10 68.6 44 61.4
AagrBONN_evm.TU.Sc2ySwM_228.4740 Anthoceros agrestis HOM05D000465 ORTHO05D000301 5.7e-07 58.9 54 46.3
AagrBONN_evm.TU.Sc2ySwM_344.500 Anthoceros agrestis HOM05D000465 ORTHO05D000301 5.7e-07 58.9 57 43.9
Mapoly0133s0013 Marchantia polymorpha HOM05D002415 ORTHO05D002522 7.5e-07 58.5 76 40.8
AagrBONN_evm.TU.Sc2ySwM_328.3 Anthoceros agrestis HOM05D000465 ORTHO05D000301 9.8e-07 58.2 54 46.3
AagrBONN_evm.TU.Sc2ySwM_340.1792 Anthoceros agrestis HOM05D000465 ORTHO05D000301 9.8e-07 58.2 60 41.7
AagrBONN_evm.TU.Sc2ySwM_368.2961 Anthoceros agrestis HOM05D000465 ORTHO05D000301 1.7e-06 57.4 60 41.7
AagrBONN_evm.TU.Sc2ySwM_368.3040 Anthoceros agrestis HOM05D000465 ORTHO05D000301 1.7e-06 57.4 54 46.3
AagrBONN_evm.TU.Sc2ySwM_228.1560 Anthoceros agrestis HOM05D000465 ORTHO05D000301 2.2e-06 57.0 60 40.0
Cre08.g377200 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D003467 2.2e-06 57.0 64 40.6
Cfa009137 Carpinus fangiana HOM05D003353 ORTHO05D003751 2.8e-06 56.6 77 36.4
AagrBONN_evm.TU.Sc2ySwM_117.2232 Anthoceros agrestis HOM05D000465 ORTHO05D000301 3.7e-06 56.2 58 41.4
AagrBONN_evm.TU.Sc2ySwM_344.3182 Anthoceros agrestis HOM05D000465 ORTHO05D000301 3.7e-06 56.2 54 44.4
AagrBONN_evm.TU.Sc2ySwM_340.916 Anthoceros agrestis HOM05D000465 ORTHO05D000301 6.3e-06 55.5 58 41.4
AagrBONN_evm.TU.Sc2ySwM_344.3725 Anthoceros agrestis HOM05D000465 ORTHO05D000301 6.3e-06 55.5 60 41.7
AagrBONN_evm.TU.Sc2ySwM_228.5868 Anthoceros agrestis HOM05D000465 ORTHO05D000301 8.3e-06 55.1 54 44.4
Mapoly0064s0056 Marchantia polymorpha HOM05D003353 ORTHO05D003751 8.3e-06 55.1 65 36.9


User provided reference genes

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