Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 0.0e+00 1327.4 921 100.0
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 2.8e-286 988.8 951 73.4
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 1.1e-274 950.3 963 71.9
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 3.5e-268 928.7 907 78.6
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 1.8e-237 826.6 937 68.0
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.6e-233 813.5 1000 63.0
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 3.9e-227 792.3 1000 65.1
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 5.0e-227 792.0 901 69.3
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 2.8e-225 786.2 1014 63.5
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.8e-224 783.5 965 65.9
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 2.0e-223 780.0 904 69.2
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 8.3e-222 774.6 903 69.4
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 3.2e-221 772.7 1018 63.7
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 5.4e-221 771.9 908 66.5
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.6e-217 760.4 890 70.2
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 8.9e-216 754.6 914 68.1
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 3.0e-211 739.6 899 65.2
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 5.1e-211 738.8 893 67.7
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 1.9e-210 736.9 899 63.1
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 3.3e-210 736.1 803 74.5
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 4.7e-209 732.3 984 62.7
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 4.7e-209 732.3 899 63.0
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.1e-208 731.1 916 62.1
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 6.4e-206 721.8 900 67.4
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 4.6e-204 715.7 897 65.8
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 3.0e-203 713.0 1001 61.4
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 1.6e-201 707.2 1006 58.6
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 1.6e-201 707.2 871 66.2
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 6.2e-201 705.3 913 59.8
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.1e-200 704.5 915 64.7
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.2e-199 701.0 1011 60.9
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 4.5e-199 699.1 912 65.8
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 8.4e-198 694.9 826 67.2
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 1.1e-197 694.5 935 62.4
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 7.1e-197 691.8 896 62.4
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 1.6e-196 690.6 861 63.0
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 7.9e-196 688.3 1016 52.5
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 3.0e-195 686.4 910 65.4
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 3.9e-195 686.0 920 63.8
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 8.7e-195 684.9 1031 56.7
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.1e-194 684.5 882 66.1
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.9e-194 683.7 909 62.5
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 1.1e-192 677.9 813 67.9
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.3e-192 675.6 898 63.8
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 9.0e-192 674.9 1007 59.0
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 9.0e-192 674.9 898 63.8
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.2e-191 674.5 1007 59.0
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 3.8e-190 669.5 975 58.4
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 1.1e-189 667.9 897 59.9
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 1.9e-189 667.2 980 57.0
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 7.1e-189 665.2 1005 59.1
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 1.0e-187 661.4 917 61.8
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.8e-187 660.6 832 66.2
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 1.8e-187 660.6 914 59.1
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 2.3e-187 660.2 880 61.9
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 2.3e-187 660.2 812 66.3
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 2.3e-187 660.2 839 64.5
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.1e-186 657.9 975 59.5
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 1.5e-186 657.5 917 62.6
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 1.5e-186 657.5 919 61.8
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 2.5e-186 656.8 988 56.9
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 3.3e-186 656.4 976 58.1
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 9.6e-186 654.8 887 61.9
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.8e-185 653.3 901 61.6
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 4.8e-185 652.5 849 62.5
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 4.0e-184 649.4 875 59.4
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 6.9e-184 648.7 804 66.2
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 2.0e-183 647.1 913 60.4
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 5.8e-183 645.6 907 60.9
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 2.9e-182 643.3 906 58.8
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 6.5e-182 642.1 825 65.0
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.9e-181 640.6 813 65.6
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 1.9e-181 640.6 888 60.9
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 4.2e-181 639.4 905 60.6
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 1.2e-180 637.9 884 61.3
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 1.2e-180 637.9 984 57.4
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 1.6e-180 637.5 809 66.1
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 2.1e-180 637.1 813 65.1
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 2.3e-179 633.6 806 62.9
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 5.1e-179 632.5 902 61.0
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 8.7e-179 631.7 853 62.4
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.1e-178 631.3 902 60.0
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 5.7e-178 629.0 812 64.5
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 7.4e-178 628.6 932 59.2
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 1.3e-177 627.9 891 58.9
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 2.2e-177 627.1 908 60.1
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 8.2e-177 625.2 895 59.7
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 3.1e-176 623.2 882 58.5
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 3.1e-176 623.2 832 65.3
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 9.0e-176 621.7 999 55.9
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 5.9e-175 619.0 790 65.9
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 1.7e-174 617.5 976 57.3
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.9e-173 614.0 880 61.8
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 2.5e-173 613.6 908 59.1
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 2.5e-173 613.6 915 59.9
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 1.3e-171 607.8 830 61.3
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 1.3e-171 607.8 903 58.4
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 3.0e-171 606.7 920 58.2
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 1.1e-170 604.7 900 59.8
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 1.5e-170 604.4 858 58.3
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 1.5e-170 604.4 984 56.1
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 1.5e-170 604.4 858 58.2
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 1.5e-170 604.4 858 58.3
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.5e-170 603.6 818 60.3
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 1.3e-169 601.3 901 59.5
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 6.3e-169 599.0 909 58.7
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 8.2e-169 598.6 987 55.7
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 1.1e-168 598.2 938 55.7
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 1.4e-168 597.8 913 58.1
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 4.1e-168 596.3 901 59.5
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 1.2e-167 594.7 912 58.8
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 1.3e-166 591.3 742 64.8
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 1.1e-165 588.2 913 58.8
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 1.9e-165 587.4 909 58.6
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 3.2e-165 586.6 862 59.5
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 5.5e-165 585.9 896 59.3
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 4.7e-164 582.8 871 57.3
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.4e-162 576.2 899 57.3
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 7.4e-162 575.5 921 57.1
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 2.8e-161 573.5 933 51.8
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 3.1e-160 570.1 813 60.1
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 1.2e-159 568.2 813 62.4
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.0e-158 565.1 822 60.3
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 1.4e-155 554.7 860 53.0
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 6.3e-153 545.8 876 54.1
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 8.2e-153 545.4 835 52.5
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 2.0e-151 540.8 859 55.8
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 7.7e-151 538.9 939 50.8
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 3.2e-149 533.5 858 53.8
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 5.5e-149 532.7 771 57.8
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 8.0e-148 528.9 951 47.3
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 4.5e-143 513.1 642 68.8
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 1.0e-142 511.9 886 50.5
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 1.0e-142 511.9 893 56.0
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 2.9e-142 510.4 874 51.9
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 7.2e-141 505.8 886 49.9
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 9.4e-141 505.4 813 56.6
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 2.8e-137 493.8 896 52.0
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 3.7e-137 493.4 731 59.4
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.7e-135 487.3 687 64.3
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 4.5e-135 486.5 919 51.9
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.8e-134 483.4 899 51.9
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 7.2e-133 479.2 741 56.1
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 6.8e-131 472.6 771 50.1
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 5.4e-120 436.4 652 71.0
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 4.7e-116 423.3 502 60.0
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 2.3e-115 421.0 684 60.2
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 8.9e-115 419.1 799 50.7
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 2.0e-114 417.9 475 58.3
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 7.0e-112 409.5 899 39.8
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 1.6e-111 408.3 650 66.3
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 7.8e-111 406.0 503 56.5
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 8.1e-100 369.4 623 51.0
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 1.7e-97 361.7 893 34.0
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.9e-97 360.9 887 46.6
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.9e-96 358.2 345 67.8
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 5.4e-96 356.7 961 36.9
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 4.9e-89 333.6 930 42.9
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.5e-85 321.2 723 44.1
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.6e-79 302.0 645 58.4
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 4.3e-77 293.9 1303 28.5
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 2.2e-73 281.6 582 52.9
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 2.7e-71 274.6 304 68.4
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 3.4e-66 257.7 259 65.3
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.8e-52 210.7 317 44.5
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 5.9e-50 203.8 138 73.2
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 1.2e-47 196.1 220 51.8
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.1e-35 156.4 212 43.9
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 1.0e-30 139.8 88 77.3
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 6.3e-28 130.6 73 82.2
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 2.2e-25 122.1 89 67.4
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 2.8e-20 105.1 136 47.1
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.5e-16 92.8 66 74.2
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 6.3e-12 77.4 167 32.3
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 2.4e-11 75.5 63 55.6
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 1.6e-10 72.8 136 69.1
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 5.2e-06 57.8 182 26.4


User provided reference genes

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