Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 0.0e+00 1077.0 543 100.0
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 4.3e-210 734.9 558 70.4
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 8.8e-179 630.9 565 60.4
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 9.1e-160 567.8 599 52.8
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.5e-158 561.2 599 53.1
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 2.6e-154 549.7 593 51.9
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 1.1e-152 544.3 553 51.4
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 9.1e-152 541.2 595 50.9
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 1.2e-151 540.8 548 51.8
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 3.5e-151 539.3 566 51.4
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 2.9e-150 536.2 545 51.0
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 1.6e-148 530.4 590 47.6
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 2.3e-147 526.6 562 50.5
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 3.0e-147 526.2 531 52.4
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 8.9e-147 524.6 574 49.1
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 2.2e-145 520.0 604 49.5
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 2.9e-145 519.6 592 50.2
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 4.9e-145 518.8 576 46.9
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.4e-144 517.3 562 48.9
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 1.8e-144 516.9 558 49.8
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 5.4e-144 515.4 571 50.8
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 1.2e-143 514.2 614 50.0
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 2.7e-143 513.1 568 48.6
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 2.7e-143 513.1 569 50.6
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 5.9e-143 511.9 568 51.8
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 7.8e-143 511.5 592 50.5
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 3.9e-142 509.2 561 48.5
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 3.9e-142 509.2 563 48.8
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 6.6e-142 508.4 567 49.0
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 8.6e-142 508.1 553 51.9
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.3e-141 506.1 476 54.4
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 3.3e-141 506.1 653 47.6
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 4.3e-141 505.8 626 47.6
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 1.2e-140 504.2 578 47.4
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 2.8e-140 503.1 596 50.0
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.8e-140 503.1 623 49.4
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 4.7e-140 502.3 598 49.8
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 1.5e-138 497.3 633 44.7
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 5.8e-138 495.4 658 46.2
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 8.3e-137 491.5 593 47.0
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.1e-136 491.1 630 48.3
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 1.1e-136 491.1 569 48.9
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 2.4e-136 490.0 561 49.0
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 2.7e-135 486.5 591 47.2
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 8.6e-134 481.5 610 44.9
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 3.6e-132 476.1 615 46.3
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 6.2e-132 475.3 475 52.0
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 5.8e-130 468.8 532 47.6
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 5.8e-130 468.8 570 48.2
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 3.7e-129 466.1 591 45.3
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.1e-128 464.5 661 43.0
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.9e-128 463.8 549 48.3
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 3.5e-127 459.5 555 45.0
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 6.0e-127 458.8 552 44.6
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 1.0e-126 458.0 547 45.5
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.7e-126 457.2 547 47.3
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 6.6e-126 455.3 549 45.2
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 6.6e-126 455.3 546 47.1
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 6.6e-126 455.3 552 46.6
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 6.6e-126 455.3 577 44.9
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.1e-125 454.5 542 47.8
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 1.1e-125 454.5 578 44.3
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.3e-125 453.0 464 52.4
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 4.3e-125 452.6 540 44.6
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 9.5e-125 451.4 544 44.3
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.6e-124 450.7 549 45.2
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 1.6e-124 450.7 556 43.2
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 1.6e-124 450.7 569 44.6
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 2.1e-124 450.3 613 45.4
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.1e-124 450.3 613 45.4
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 3.6e-124 449.5 540 47.2
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 6.2e-124 448.7 480 49.6
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 8.1e-124 448.4 560 46.1
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 1.1e-123 448.0 571 42.4
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 2.3e-123 446.8 552 44.4
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.3e-123 446.8 576 44.4
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 4.0e-123 446.0 568 42.3
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 8.9e-123 444.9 601 43.9
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 1.2e-122 444.5 554 46.0
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 1.5e-122 444.1 577 42.3
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 7.6e-122 441.8 565 45.1
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.3e-121 441.0 444 50.9
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 3.7e-121 439.5 564 44.5
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 4.9e-121 439.1 536 46.6
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.4e-120 436.8 451 51.2
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 3.2e-120 436.4 555 45.4
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 4.1e-120 436.0 534 44.2
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 5.4e-120 435.6 531 43.7
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 1.2e-119 434.5 551 45.2
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.6e-119 434.1 467 49.9
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 2.1e-119 433.7 550 45.1
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 2.7e-119 433.3 582 44.2
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.3e-118 430.3 471 49.0
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.4e-115 421.0 427 51.3
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 1.5e-114 417.5 526 47.3
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 3.4e-114 416.4 541 42.7
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 1.2e-111 407.9 426 52.1
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 2.5e-109 400.2 224 96.4
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 4.4e-106 389.4 537 42.3
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 1.3e-100 371.3 560 42.5
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 2.1e-100 370.5 505 41.8
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 2.2e-97 360.5 419 48.9
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 2.3e-94 350.5 552 39.3
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 3.0e-94 350.1 350 52.6
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 7.4e-93 345.5 340 54.1
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 1.1e-91 341.7 654 37.6
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 4.5e-90 336.3 410 42.9
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 3.8e-89 333.2 391 44.5
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 3.5e-87 326.6 540 38.3
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 6.0e-87 325.9 288 56.9
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 8.2e-84 315.5 328 49.7
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 1.1e-83 315.1 414 41.1
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 1.0e-81 308.5 499 41.1
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 2.1e-79 300.8 462 39.6
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 1.9e-77 294.3 448 37.9
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 6.3e-76 289.3 345 44.3
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 6.9e-75 285.8 247 57.1
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 1.5e-74 284.6 305 48.2
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 2.5e-69 267.3 230 58.7
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 9.1e-59 232.3 256 50.8
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 5.9e-58 229.6 225 51.1
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 1.7e-57 228.0 281 44.8
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 7.2e-56 222.6 283 43.5
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 1.6e-55 221.5 132 72.7
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 6.1e-55 219.5 222 53.2
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 1.0e-54 218.8 330 40.6
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.4e-54 218.4 234 50.0
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.8e-52 209.9 235 48.1
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 8.2e-52 209.1 266 45.5
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 2.4e-51 207.6 211 48.8
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.1e-51 207.2 284 42.6
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 9.1e-51 205.7 304 40.8
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 8.0e-47 192.6 155 54.8
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 5.9e-42 176.4 266 48.5
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 1.2e-39 168.7 374 38.0
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.6e-39 167.2 166 51.2
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 1.0e-38 165.6 226 44.2
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.3e-38 164.5 184 48.4
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.6e-37 161.0 184 47.8
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 9.8e-37 159.1 185 48.6
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 2.8e-36 157.5 183 47.5
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.7e-36 157.1 184 46.7
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.3e-36 156.4 184 46.7
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.3e-36 156.4 184 46.7
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.3e-36 156.4 184 46.7
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.5e-32 145.2 148 50.7
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 2.3e-30 137.9 153 48.4
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.3e-28 132.1 156 54.5
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 2.9e-28 131.0 247 36.0
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 4.1e-27 127.1 613 21.9
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-26 124.8 88 63.6
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 8.6e-25 119.4 105 54.3
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 1.1e-24 119.0 125 44.8
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-23 115.5 99 54.5
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 1.6e-23 115.2 100 57.0
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 3.6e-23 114.0 105 52.4
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 8.0e-23 112.8 230 42.6
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.9e-19 101.7 187 34.8
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 5.4e-19 100.1 91 50.5
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 8.6e-17 92.8 198 36.9
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 5.6e-16 90.1 121 39.7
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-15 89.0 84 51.2
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 8.9e-14 82.8 69 50.7
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 6.4e-12 76.6 78 47.4
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.7e-10 71.2 45 68.9
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 3.9e-09 67.4 45 64.4
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.9e-08 65.1 95 44.2
Cc00_g35850 Coffea canephora HOM05D003812 ORTHO05D004393 2.5e-08 64.7 142 39.4
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 5.6e-08 63.5 274 32.1
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 1.2e-07 62.4 100 40.0
Glyma.01G161051 Glycine max HOM05D003812 ORTHO05D004393 1.6e-07 62.0 84 41.7


User provided reference genes

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