Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 2.9e-35 151.4 76 100.0
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 1.2e-14 82.8 63 73.0
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 1.8e-13 79.0 54 77.8
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 1.2e-12 76.3 69 62.3
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 1.5e-12 75.9 50 78.0
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 1.5e-12 75.9 54 74.1
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 2.0e-12 75.5 49 79.6
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 2.6e-12 75.1 51 76.5
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 3.4e-12 74.7 52 73.1
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 3.4e-12 74.7 49 77.6
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 4.4e-12 74.3 52 73.1
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 5.8e-12 73.9 49 77.6
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 5.8e-12 73.9 55 70.9
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 5.8e-12 73.9 52 73.1
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 5.8e-12 73.9 52 73.1
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 5.8e-12 73.9 52 69.2
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 5.8e-12 73.9 50 78.0
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 5.8e-12 73.9 52 73.1
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 5.8e-12 73.9 52 73.1
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 7.6e-12 73.6 50 76.0
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 7.6e-12 73.6 52 75.0
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 7.6e-12 73.6 50 76.0
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 9.9e-12 73.2 54 70.4
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 9.9e-12 73.2 52 71.2
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 9.9e-12 73.2 50 78.0
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 1.3e-11 72.8 52 73.1
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 1.3e-11 72.8 52 73.1
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 1.3e-11 72.8 49 77.6
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 1.3e-11 72.8 52 73.1
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 1.7e-11 72.4 52 71.2
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 1.7e-11 72.4 52 71.2
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 1.7e-11 72.4 49 77.6
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.7e-11 72.4 50 76.0
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.7e-11 72.4 50 76.0
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 1.7e-11 72.4 52 69.2
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 1.7e-11 72.4 52 73.1
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 1.7e-11 72.4 49 75.5
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 1.7e-11 72.4 52 73.1
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 1.7e-11 72.4 52 71.2
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 2.2e-11 72.0 50 74.0
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.2e-11 72.0 54 68.5
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 2.9e-11 71.6 49 77.6
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 2.9e-11 71.6 49 77.6
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 3.8e-11 71.2 52 71.2
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 3.8e-11 71.2 52 71.2
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 3.8e-11 71.2 52 71.2
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 3.8e-11 71.2 52 71.2
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 3.8e-11 71.2 52 71.2
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 3.8e-11 71.2 52 71.2
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 4.9e-11 70.9 61 63.9
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 4.9e-11 70.9 61 63.9
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 4.9e-11 70.9 61 63.9
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 4.9e-11 70.9 49 75.5
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 4.9e-11 70.9 52 71.2
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 4.9e-11 70.9 52 69.2
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 4.9e-11 70.9 52 71.2
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 4.9e-11 70.9 50 72.0
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 4.9e-11 70.9 49 75.5
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 4.9e-11 70.9 52 69.2
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 4.9e-11 70.9 52 69.2
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 6.4e-11 70.5 49 75.5
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 6.4e-11 70.5 52 71.2
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 6.4e-11 70.5 52 69.2
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 6.4e-11 70.5 52 69.2
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 6.4e-11 70.5 49 75.5
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 6.4e-11 70.5 51 72.5
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 6.4e-11 70.5 52 67.3
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 6.4e-11 70.5 52 67.3
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 8.4e-11 70.1 52 71.2
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 8.4e-11 70.1 49 75.5
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 8.4e-11 70.1 50 74.0
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 8.4e-11 70.1 50 74.0
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 8.4e-11 70.1 51 72.5
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 8.4e-11 70.1 51 72.5
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 1.1e-10 69.7 49 73.5
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 1.1e-10 69.7 49 73.5
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.1e-10 69.7 52 71.2
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 1.4e-10 69.3 52 65.4
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 1.9e-10 68.9 49 75.5
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 1.9e-10 68.9 49 73.5
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 2.4e-10 68.6 52 69.2
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 2.4e-10 68.6 52 67.3
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 4.1e-10 67.8 47 72.3
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 4.1e-10 67.8 52 71.2
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 4.1e-10 67.8 56 62.5
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 5.4e-10 67.4 48 75.0
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 5.4e-10 67.4 52 67.3
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 5.4e-10 67.4 52 67.3
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 7.1e-10 67.0 58 65.5
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 7.1e-10 67.0 58 65.5
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 7.1e-10 67.0 58 65.5
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 7.1e-10 67.0 58 65.5
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 1.2e-09 66.2 52 63.5
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 1.2e-09 66.2 56 60.7
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 1.6e-09 65.9 53 67.9
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 3.5e-09 64.7 49 65.3
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 1.0e-08 63.2 51 66.7
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.0e-08 63.2 49 65.3
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 1.3e-08 62.8 42 73.8
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.7e-08 62.4 52 63.5
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.7e-08 62.4 55 61.8
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.7e-08 62.4 55 61.8
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 1.7e-08 62.4 55 61.8
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 1.7e-08 62.4 52 63.5
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 2.3e-08 62.0 50 66.0
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 2.3e-08 62.0 50 66.0
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 3.0e-08 61.6 50 68.0
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 1.5e-07 59.3 41 78.0
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 1.9e-07 58.9 48 64.6
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 3.3e-07 58.2 53 52.8
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 3.3e-07 58.2 40 77.5
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 7.3e-07 57.0 51 62.7
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 7.3e-07 57.0 51 62.7
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 7.3e-07 57.0 39 74.4
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 7.3e-07 57.0 51 62.7
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.1e-06 55.5 42 64.3
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 8.1e-06 53.5 51 58.8


User provided reference genes

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