Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0134001 Helianthus annuus HOM05D000626 ORTHO05D003868 2.7e-29 131.3 67 100.0
HanXRQChr03g0075101 Helianthus annuus HOM05D000626 ORTHO05D003868 1.0e-28 129.4 66 98.5
HanXRQChr06g0170541 Helianthus annuus HOM05D000626 ORTHO05D003868 1.0e-28 129.4 66 98.5
HanXRQChr15g0487501 Helianthus annuus HOM05D000626 ORTHO05D003868 4.8e-26 120.6 62 100.0
Lsat_1_v5_gn_4_144441 Lactuca sativa HOM05D000626 ORTHO05D003868 2.9e-23 111.3 62 90.3
ECA232G3839 Erigeron canadensis HOM05D000626 ORTHO05D003868 1.9e-22 108.6 62 88.7
TAR628G0085 Trochodendron aralioides HOM05D000626 ORTHO05D003868 1.6e-21 105.5 62 87.1
Potri.007G031000 Populus trichocarpa HOM05D000626 ORTHO05D003868 2.1e-21 105.1 62 80.6
Dinv39947 Davidia involucrata HOM05D000626 ORTHO05D003868 2.7e-21 104.8 62 83.9
Sabra07G0026800 Salix brachista HOM05D000626 ORTHO05D003868 2.7e-21 104.8 62 82.3
Duzib264G0072 Durio zibethinus HOM05D000626 ORTHO05D003868 3.5e-21 104.4 62 82.3
Manes.13G136200 Manihot esculenta HOM05D000626 ORTHO05D003868 6.0e-21 103.6 60 86.7
Cpa.g.sc158.17 Carica papaya HOM05D000626 ORTHO05D003868 7.9e-21 103.2 60 81.7
SalBow5G3169 Salvia bowleyana HOM05D000626 ORTHO05D003868 7.9e-21 103.2 62 83.9
Cc07_g09070 Coffea canephora HOM05D000626 ORTHO05D003868 1.0e-20 102.8 62 83.9
Glyma.12G045400 Glycine max HOM05D000626 ORTHO05D003868 1.0e-20 102.8 62 79.0
Prupe.8G102600 Prunus persica HOM05D000626 ORTHO05D003868 1.0e-20 102.8 62 80.6
Glyma.11G120300 Glycine max HOM05D000626 ORTHO05D003868 1.3e-20 102.4 62 79.0
Potri.005G127000 Populus trichocarpa HOM05D000626 ORTHO05D003868 1.8e-20 102.1 62 79.0
Thecc.01G041600 Theobroma cacao HOM05D000626 ORTHO05D003868 1.8e-20 102.1 62 80.6
TAR376G0372 Trochodendron aralioides HOM05D000626 ORTHO05D003868 1.8e-20 102.1 62 85.5
MD05G1070400 Malus domestica HOM05D000626 ORTHO05D003868 2.3e-20 101.7 62 79.0
MD10G1081300 Malus domestica HOM05D000626 ORTHO05D003868 2.3e-20 101.7 62 79.0
Manes.12G098300 Manihot esculenta HOM05D000626 ORTHO05D003868 2.3e-20 101.7 60 83.3
Eucgr.G01893 Eucalyptus grandis HOM05D000626 ORTHO05D003868 3.0e-20 101.3 62 82.3
TWI09G1554 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 3.0e-20 101.3 60 86.7
Actinidia00502 Actinidia chinensis HOM05D000626 ORTHO05D003868 3.9e-20 100.9 62 79.0
Duzib147G0490 Durio zibethinus HOM05D000626 ORTHO05D003868 3.9e-20 100.9 62 80.6
CiPaw.05G061300 Carya illinoinensis HOM05D000626 ORTHO05D003868 5.1e-20 100.5 62 79.0
Nn5g29507 Nelumbo nucifera HOM05D000626 ORTHO05D003868 5.1e-20 100.5 62 80.6
GSVIVG01019024001 Vitis vinifera HOM05D000626 ORTHO05D003868 5.1e-20 100.5 62 80.6
Atru.chr3.513 Acer truncatum HOM05D000626 ORTHO05D003868 6.7e-20 100.1 62 82.3
FvH4_2g08200 Fragaria vesca HOM05D000626 ORTHO05D003868 6.7e-20 100.1 60 80.0
FAN20G2380 Fragaria x ananassa HOM05D000626 ORTHO05D003868 6.7e-20 100.1 60 80.0
SGA_v2.0_scaffold276G46656 Striga asiatica HOM05D000626 ORTHO05D003868 6.7e-20 100.1 62 77.4
Thecc.02G122300 Theobroma cacao HOM05D000626 ORTHO05D003868 6.7e-20 100.1 62 75.8
DCAR_017221 Daucus carota HOM05D000626 ORTHO05D003868 8.7e-20 99.8 62 82.3
Gohir.A04G117400 Gossypium hirsutum HOM05D000626 ORTHO05D003868 8.7e-20 99.8 62 77.4
Gohir.D04G159100 Gossypium hirsutum HOM05D000626 ORTHO05D003868 8.7e-20 99.8 62 77.4
Gorai.012G146500 Gossypium raimondii HOM05D000626 ORTHO05D003868 8.7e-20 99.8 62 77.4
Oeu032561.1 Olea europaea HOM05D000626 ORTHO05D003868 8.7e-20 99.8 60 83.3
Phvul.011G047300 Phaseolus vulgaris HOM05D000626 ORTHO05D003868 8.7e-20 99.8 62 75.8
ATR0733G160 Amborella trichopoda HOM05D000626 ORTHO05D003868 1.1e-19 99.4 62 75.8
COL.COLO4_32455 Corchorus olitorius HOM05D000626 ORTHO05D003868 1.1e-19 99.4 62 77.4
Oeu035116.1 Olea europaea HOM05D000626 ORTHO05D003868 1.1e-19 99.4 60 81.7
Peaxi162Scf00684g00567 Petunia axillaris HOM05D000626 ORTHO05D003868 1.1e-19 99.4 62 79.0
QL11p042537 Quercus lobata HOM05D000626 ORTHO05D003868 1.1e-19 99.4 62 77.4
TPR.G28529 Trifolium pratense HOM05D000626 ORTHO05D003868 1.1e-19 99.4 62 79.0
ClCG09G017810 Citrullus lanatus HOM05D000626 ORTHO05D003868 1.5e-19 99.0 62 79.0
Gorai.013G052700 Gossypium raimondii HOM05D000626 ORTHO05D003868 1.5e-19 99.0 62 77.4
Hma1.2p1_0066F.1_g036710 Hydrangea macrophylla HOM05D000626 ORTHO05D003868 1.5e-19 99.0 62 79.0
Lj3g0026150 Lotus japonicus HOM05D000626 ORTHO05D003868 1.5e-19 99.0 62 79.0
Nitab4.5_0000336g0150 Nicotiana tabacum HOM05D000626 ORTHO05D003868 1.5e-19 99.0 62 79.0
RcHm_v2.0_Chr6g0262991 Rosa chinensis HOM05D000626 ORTHO05D003868 1.5e-19 99.0 60 78.3
HPP92_010187 Vanilla planifolia HOM05D000626 ORTHO05D003868 1.5e-19 99.0 62 80.6
MSTRG.23557 Avicennia marina HOM05D000626 ORTHO05D003868 1.9e-19 98.6 60 81.7
Gohir.A13G048600 Gossypium hirsutum HOM05D000626 ORTHO05D003868 1.9e-19 98.6 62 75.8
Gohir.D13G047000 Gossypium hirsutum HOM05D000626 ORTHO05D003868 1.9e-19 98.6 62 75.8
Sed0005165 Sechium edule HOM05D000626 ORTHO05D003868 1.9e-19 98.6 62 77.4
SEGI_04451 Sequoiadendron giganteum HOM05D000626 ORTHO05D003868 1.9e-19 98.6 61 78.7
TWI53G0930 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 1.9e-19 98.6 60 85.0
Aqoxy5G01696 Aquilegia oxysepala HOM05D000626 ORTHO05D003868 2.5e-19 98.2 62 77.4
CDE01G0575 Ceratophyllum demersum HOM05D000626 ORTHO05D003868 2.5e-19 98.2 62 77.4
Duzib132G0298 Durio zibethinus HOM05D000626 ORTHO05D003868 2.5e-19 98.2 62 75.8
Lj5C200G5 Lonicera japonica HOM05D000626 ORTHO05D003868 2.5e-19 98.2 62 77.4
Nitab4.5_0000199g0010 Nicotiana tabacum HOM05D000626 ORTHO05D003868 2.5e-19 98.2 62 77.4
arahy.Tifrunner.gnm1.ann1.GNS53T Arachis hypogaea HOM05D000626 ORTHO05D003868 3.3e-19 97.8 62 77.4
CSS0014885 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 3.3e-19 97.8 62 79.0
CsaV3_2G014400 Cucumis sativus L. HOM05D000626 ORTHO05D003868 3.3e-19 97.8 62 77.4
Prupe.7G148700 Prunus persica HOM05D000626 ORTHO05D003868 3.3e-19 97.8 62 79.0
arahy.Tifrunner.gnm1.ann1.NL7PFA Arachis hypogaea HOM05D000626 ORTHO05D003868 4.3e-19 97.4 62 77.4
Ciclev10028484m.g Citrus clementina HOM05D000626 ORTHO05D003868 4.3e-19 97.4 60 76.7
Lalb_Chr03g0025801 Lupinus albus HOM05D000626 ORTHO05D003868 4.3e-19 97.4 62 75.8
SGA_v2.0_scaffold33G13424 Striga asiatica HOM05D000626 ORTHO05D003868 4.3e-19 97.4 62 75.8
VMungo1127G0953 Vigna mungo HOM05D000626 ORTHO05D003868 4.3e-19 97.4 62 75.8
GSVIVG01031917001 Vitis vinifera HOM05D000626 ORTHO05D003868 4.3e-19 97.4 62 75.8
MSTRG.16792 Avicennia marina HOM05D000626 ORTHO05D003868 5.6e-19 97.1 60 73.3
Solyc01g109410.4 Solanum lycopersicum HOM05D000626 ORTHO05D003868 7.4e-19 96.7 61 80.3
THA.LOC104826869 Tarenaya hassleriana HOM05D000626 ORTHO05D003868 7.4e-19 96.7 60 80.0
unitig_37.g12815 Utricularia gibba HOM05D000626 ORTHO05D003868 7.4e-19 96.7 62 77.4
Haze_02415 Corylus avellana HOM05D000626 ORTHO05D003868 9.6e-19 96.3 62 75.8
Nitab4.5_0001794g0020 Nicotiana tabacum HOM05D000626 ORTHO05D003868 9.6e-19 96.3 62 75.8
Psat7g141000 Pisum sativum HOM05D000626 ORTHO05D003868 9.6e-19 96.3 62 75.8
Actinidia25417 Actinidia chinensis HOM05D000626 ORTHO05D003868 1.3e-18 95.9 62 75.8
Actinidia36541 Actinidia chinensis HOM05D000626 ORTHO05D003868 1.3e-18 95.9 62 75.8
Ca_20850_v3 Cicer arietinum L. HOM05D000626 ORTHO05D003868 1.3e-18 95.9 62 75.8
Nitab4.5_0008989g0040 Nicotiana tabacum HOM05D000626 ORTHO05D003868 1.3e-18 95.9 62 75.8
Sed0006655 Sechium edule HOM05D000626 ORTHO05D003868 1.3e-18 95.9 61 75.4
CAN.G322.113 Capsicum annuum HOM05D000626 ORTHO05D003868 1.6e-18 95.5 61 78.7
MELO3C021946.2 Cucumis melo HOM05D000626 ORTHO05D003868 1.6e-18 95.5 62 75.8
Sopen01g051600 Solanum pennellii HOM05D000626 ORTHO05D003868 1.6e-18 95.5 61 78.7
THA.LOC104819216 Tarenaya hassleriana HOM05D000626 ORTHO05D003868 1.6e-18 95.5 60 78.3
Lalb_Chr01g0002691 Lupinus albus HOM05D000626 ORTHO05D003868 2.1e-18 95.1 62 74.2
Medtr4g069240 Medicago truncatula HOM05D000626 ORTHO05D003868 2.1e-18 95.1 62 75.8
CSS0006874 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 3.6e-18 94.4 62 72.6
Duzib052G0942 Durio zibethinus HOM05D000626 ORTHO05D003868 3.6e-18 94.4 62 72.6
EL10Ac9g21756 Beta vulgaris HOM05D000626 ORTHO05D003868 4.8e-18 94.0 62 72.6
CSS0002315 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 4.8e-18 94.0 62 72.6
Cpa.g.sc62.112 Carica papaya HOM05D000626 ORTHO05D003868 4.8e-18 94.0 62 72.6
Cc02_g17860 Coffea canephora HOM05D000626 ORTHO05D003868 4.8e-18 94.0 62 72.6
PGR042G1683 Punica granatum HOM05D000626 ORTHO05D003868 4.8e-18 94.0 60 75.0
Migut.H00194 Erythranthe guttata HOM05D000626 ORTHO05D003868 6.2e-18 93.6 62 74.2
Hund06221 Selenicereus undatus HOM05D000626 ORTHO05D003868 6.2e-18 93.6 60 75.0
SGA_v2.0_scaffold58G20567 Striga asiatica HOM05D000626 ORTHO05D003868 6.2e-18 93.6 60 73.3
TWI31G0747 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 6.2e-18 93.6 60 76.7
Aqoxy6G01025 Aquilegia oxysepala HOM05D000626 ORTHO05D003868 1.1e-17 92.8 60 75.0
Sc18g0004660 Simmondsia chinensis HOM05D000626 ORTHO05D003868 1.1e-17 92.8 62 71.0
AUR62011357 Chenopodium quinoa HOM05D000626 ORTHO05D003868 1.4e-17 92.4 60 73.3
MD15G1269000 Malus domestica HOM05D000626 ORTHO05D003868 1.4e-17 92.4 62 75.8
CSS0013243 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 1.8e-17 92.0 62 71.0
CSS0037823 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 1.8e-17 92.0 62 71.0
PSO541G5997 Papaver somniferum HOM05D000626 ORTHO05D003868 1.8e-17 92.0 61 77.0
PSO675G2926 Papaver somniferum HOM05D000626 ORTHO05D003868 1.8e-17 92.0 61 77.0
Lj4C195G12 Lonicera japonica HOM05D000626 ORTHO05D003868 2.4e-17 91.7 61 75.4
BcaB02g10001 Brassica carinata HOM05D000626 ORTHO05D003868 3.1e-17 91.3 60 73.3
COL.COLO4_22139 Corchorus olitorius HOM05D000626 ORTHO05D003868 3.1e-17 91.3 53 84.9
Sp2g30020 Schrenkiella parvula HOM05D000626 ORTHO05D003868 3.1e-17 91.3 60 71.7
BcaB04g20111 Brassica carinata HOM05D000626 ORTHO05D003868 4.0e-17 90.9 60 73.3
BcaC06g34731 Brassica carinata HOM05D000626 ORTHO05D003868 4.0e-17 90.9 60 73.3
A09p09850 Brassica napus HOM05D000626 ORTHO05D003868 4.0e-17 90.9 60 73.3
C07p25140 Brassica napus HOM05D000626 ORTHO05D003868 4.0e-17 90.9 60 73.3
BolC7t43044H Brassica oleracea HOM05D000626 ORTHO05D003868 4.0e-17 90.9 60 73.3
BolC9t54060H Brassica oleracea HOM05D000626 ORTHO05D003868 4.0e-17 90.9 60 73.3
BraA09t36632Z Brassica rapa HOM05D000626 ORTHO05D003868 4.0e-17 90.9 60 73.3
FAN27G0454 Fragaria x ananassa HOM05D000626 ORTHO05D003868 4.0e-17 90.9 73 65.8
SalBow6G3366 Salvia bowleyana HOM05D000626 ORTHO05D003868 4.0e-17 90.9 62 72.6
Zm00001eb303200 Zea mays HOM05D000626 ORTHO05D003868 5.3e-17 90.5 60 71.7
BcaC04g23148 Brassica carinata HOM05D000626 ORTHO05D003868 9.0e-17 89.7 60 71.7
AT5G66680 Arabidopsis thaliana HOM05D000626 ORTHO05D003868 1.2e-16 89.4 60 71.7
BraA07t29454Z Brassica rapa HOM05D000626 ORTHO05D003868 1.2e-16 89.4 60 71.7
Thhalv10004242m.g Eutrema salsugineum HOM05D000626 ORTHO05D003868 1.2e-16 89.4 60 71.7
FAN15G2364 Fragaria x ananassa HOM05D000626 ORTHO05D003868 1.2e-16 89.4 73 64.4
AagrBONN_evm.TU.Sc2ySwM_117.2383 Anthoceros agrestis HOM05D000626 ORTHO05D003868 1.5e-16 89.0 58 75.9
AL8G44800 Arabidopsis lyrata HOM05D000626 ORTHO05D003868 1.5e-16 89.0 59 72.9
CARHR281040 Cardamine hirsuta HOM05D000626 ORTHO05D003868 1.5e-16 89.0 59 72.9
C09p11660 Brassica napus HOM05D000626 ORTHO05D003868 2.0e-16 88.6 60 70.0
Mapoly0103s0006 Marchantia polymorpha HOM05D000626 ORTHO05D003868 2.6e-16 88.2 58 74.1
Aa31LG1G15220 Aethionema arabicum HOM05D000626 ORTHO05D003868 4.5e-16 87.4 60 71.7
Atru.chr5.2949 Acer truncatum HOM05D000626 ORTHO05D003868 7.6e-16 86.7 62 67.7
Carub.0008s2782 Capsella rubella HOM05D000626 ORTHO05D003868 7.6e-16 86.7 59 71.2
Manes.15G148600 Manihot esculenta HOM05D000626 ORTHO05D003868 9.9e-16 86.3 61 70.5
Lj2C447T14 Lonicera japonica HOM05D000626 ORTHO05D003868 1.3e-15 85.9 59 78.0
vmacro02136 Vaccinium macrocarpon HOM05D000626 ORTHO05D003868 1.3e-15 85.9 60 66.7
vmacro23069 Vaccinium macrocarpon HOM05D000626 ORTHO05D003868 1.3e-15 85.9 60 66.7
A07p17280 Brassica napus HOM05D000626 ORTHO05D003868 1.7e-15 85.5 57 71.9
CANSAT01G0918 Cannabis sativa HOM05D000626 ORTHO05D003868 4.9e-15 84.0 62 67.7
AUR62008017 Chenopodium quinoa HOM05D000626 ORTHO05D003868 6.4e-15 83.6 58 69.0
Hund14135 Selenicereus undatus HOM05D000626 ORTHO05D003868 8.4e-15 83.2 58 69.0
EL10Ac6g14893 Beta vulgaris HOM05D000626 ORTHO05D003868 2.4e-14 81.6 60 68.3
AUR62003200 Chenopodium quinoa HOM05D000626 ORTHO05D003868 2.4e-14 81.6 58 67.2
Pp3c24_6930 Physcomitrium patens HOM05D000626 ORTHO05D003868 7.1e-14 80.1 59 66.1
Duzib251G0751 Durio zibethinus HOM05D000626 ORTHO05D003868 9.3e-14 79.7 62 62.9
FAN24G1839 Fragaria x ananassa HOM05D000626 ORTHO05D003868 1.2e-13 79.3 103 46.6
MD12G1035200 Malus domestica HOM05D000626 ORTHO05D003868 1.6e-13 79.0 62 61.3
Ah.01g019620 Amaranthus hybridus HOM05D000626 ORTHO05D003868 1.0e-12 76.3 81 51.9
CBR_g28880 Chara braunii HOM05D000626 ORTHO05D003868 1.8e-12 75.5 61 55.7
SMO358G0537 Selaginella moellendorffii HOM05D000626 ORTHO05D003868 1.9e-11 72.0 56 64.3
BcaB07g29659 Brassica carinata HOM05D000626 ORTHO05D003868 2.5e-11 71.6 47 72.3
HPP92_010240 Vanilla planifolia HOM05D000626 ORTHO05D003868 4.3e-11 70.9 46 76.1
Cfa019187 Carpinus fangiana HOM05D003289 ORTHO05D034141 1.3e-10 69.3 46 71.7
SGA_v2.0_scaffold31G12912 Striga asiatica HOM05D000626 ORTHO05D003868 3.1e-09 64.7 62 58.1
Peaxi162Scf00016g00944 Petunia axillaris HOM05D000626 ORTHO05D003868 6.9e-09 63.5 56 62.5
Zm00001eb095330 Zea mays HOM05D000626 ORTHO05D003868 9.0e-09 63.2 39 76.9
Ah.03g139660 Amaranthus hybridus HOM05D000626 ORTHO05D003868 3.2e-06 54.7 45 57.8


User provided reference genes

Program Settings