Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 4.1e-187 657.9 333 100.0
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 7.6e-141 504.2 334 77.5
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 3.2e-139 498.8 334 76.3
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 1.9e-136 489.6 334 75.1
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 1.2e-117 427.2 331 65.3
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.2e-117 427.2 330 65.8
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 1.5e-117 426.8 265 75.8
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 3.4e-117 425.6 336 65.5
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 1.7e-116 423.3 334 66.5
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 1.7e-116 423.3 329 64.4
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 3.8e-116 422.2 330 63.3
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 5.0e-116 421.8 336 64.3
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 1.1e-115 420.6 331 62.5
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 1.1e-115 420.6 332 65.4
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 1.4e-115 420.2 283 71.0
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 1.9e-115 419.9 263 76.4
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 4.2e-115 418.7 285 71.9
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 5.5e-115 418.3 300 69.7
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 7.2e-115 417.9 294 68.7
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 9.4e-115 417.5 285 71.2
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.1e-114 416.4 333 63.1
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 2.1e-114 416.4 333 66.1
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 2.7e-114 416.0 330 62.7
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 2.7e-114 416.0 338 63.3
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 3.6e-114 415.6 279 73.8
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 4.6e-114 415.2 329 62.6
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 6.1e-114 414.8 263 75.3
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 6.1e-114 414.8 285 71.2
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 6.1e-114 414.8 283 71.7
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 6.1e-114 414.8 344 61.6
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 6.1e-114 414.8 306 67.6
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 1.0e-113 414.1 256 76.2
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 1.0e-113 414.1 329 62.6
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.4e-113 413.7 336 63.1
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 1.4e-113 413.7 329 62.6
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 1.4e-113 413.7 321 66.7
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 1.4e-113 413.7 263 74.5
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.3e-113 412.9 341 63.0
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 5.1e-113 411.8 318 66.7
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 5.1e-113 411.8 341 63.0
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 5.1e-113 411.8 330 63.0
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 8.8e-113 411.0 259 75.3
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 8.8e-113 411.0 265 74.0
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 8.8e-113 411.0 327 63.0
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.5e-112 410.2 265 74.3
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 2.0e-112 409.8 322 64.3
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 2.0e-112 409.8 337 64.1
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 2.5e-112 409.5 265 73.6
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 2.5e-112 409.5 263 74.9
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.3e-112 408.7 265 73.6
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 4.3e-112 408.7 302 67.5
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 5.7e-112 408.3 302 67.5
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 7.4e-112 407.9 308 65.9
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 7.4e-112 407.9 324 64.5
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 7.4e-112 407.9 288 67.7
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 7.4e-112 407.9 263 74.9
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 9.7e-112 407.5 261 77.0
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 9.7e-112 407.5 334 61.7
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 9.7e-112 407.5 265 74.0
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 9.7e-112 407.5 259 74.9
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.7e-111 406.8 263 73.8
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 2.2e-111 406.4 276 71.4
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 2.2e-111 406.4 265 74.3
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 2.2e-111 406.4 330 61.8
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 2.8e-111 406.0 334 62.0
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 2.8e-111 406.0 285 67.7
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 2.8e-111 406.0 297 68.4
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 4.8e-111 405.2 263 74.1
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 4.8e-111 405.2 263 72.6
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 6.3e-111 404.8 338 61.8
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 8.2e-111 404.4 263 74.5
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 8.2e-111 404.4 338 62.1
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.4e-110 403.7 330 61.2
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 1.4e-110 403.7 263 73.4
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.8e-110 403.3 263 73.8
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 1.8e-110 403.3 332 63.9
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 1.8e-110 403.3 328 61.6
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 2.4e-110 402.9 265 72.8
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 3.1e-110 402.5 317 63.7
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 6.9e-110 401.4 263 73.4
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 6.9e-110 401.4 263 73.4
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 9.1e-110 401.0 261 74.7
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 9.1e-110 401.0 317 64.0
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.2e-109 400.6 284 69.0
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 1.5e-109 400.2 263 73.4
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 1.5e-109 400.2 263 73.4
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.5e-109 400.2 263 73.4
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 2.0e-109 399.8 262 72.5
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 2.0e-109 399.8 285 68.8
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 2.0e-109 399.8 263 73.0
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 3.4e-109 399.1 265 71.7
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 4.5e-109 398.7 263 72.6
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 4.5e-109 398.7 263 73.8
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 4.5e-109 398.7 263 73.0
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 4.5e-109 398.7 263 73.0
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 7.7e-109 397.9 329 62.3
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 7.7e-109 397.9 267 71.2
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.0e-108 397.5 263 73.0
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 1.3e-108 397.1 331 61.3
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 1.3e-108 397.1 263 71.5
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 1.7e-108 396.7 263 73.4
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 6.5e-108 394.8 263 71.5
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 1.1e-107 394.0 263 72.2
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 1.1e-107 394.0 263 71.9
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.4e-107 393.7 265 70.9
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 1.4e-107 393.7 252 75.4
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 1.4e-107 393.7 321 62.6
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.9e-107 393.3 263 70.7
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 1.9e-107 393.3 263 71.9
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 2.5e-107 392.9 261 72.0
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 2.5e-107 392.9 281 68.3
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 3.2e-107 392.5 263 71.9
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 5.5e-107 391.7 323 62.2
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 5.5e-107 391.7 266 71.4
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 9.4e-107 391.0 261 71.3
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 2.1e-106 389.8 265 70.2
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 2.7e-106 389.4 268 67.5
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 4.7e-106 388.7 261 70.9
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 6.1e-106 388.3 255 73.3
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.4e-105 387.1 259 71.4
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 2.3e-105 386.3 303 62.7
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 6.7e-105 384.8 330 59.7
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 1.3e-103 380.6 268 69.0
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 6.3e-103 378.3 256 70.3
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 8.2e-103 377.9 343 59.8
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 1.1e-102 377.5 298 63.1
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 3.1e-102 375.9 307 63.8
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 3.1e-102 375.9 299 60.9
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 4.1e-102 375.6 299 63.2
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 4.5e-101 372.1 264 67.0
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 4.7e-98 362.1 263 67.7
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 1.4e-97 360.5 325 57.5
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 2.8e-95 352.8 263 66.2
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 1.1e-94 350.9 224 75.9
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 3.1e-94 349.4 340 57.1
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 1.6e-93 347.1 264 61.0
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 8.5e-92 341.3 310 55.2
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 4.7e-90 335.5 285 56.8
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 6.8e-89 331.6 263 59.3
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 3.6e-82 309.3 259 63.3
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 2.7e-77 293.1 262 56.9
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 1.3e-76 290.8 255 52.5
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 1.7e-76 290.4 228 67.1
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 2.9e-76 289.7 173 80.3
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 4.2e-75 285.8 201 70.1
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 4.7e-74 282.3 265 52.1
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 1.2e-72 277.7 264 54.9
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 5.4e-70 268.9 175 74.9
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.1e-62 244.6 249 56.2
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 1.7e-55 220.7 166 68.7
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 3.2e-54 216.5 224 55.8
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 5.4e-54 215.7 205 56.6
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 8.6e-52 208.4 175 64.0
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 3.3e-51 206.5 178 56.7
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 1.5e-48 197.6 249 47.0
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.2e-45 188.0 183 52.5
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 2.7e-45 186.8 284 40.8
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.5e-43 180.3 110 77.3
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 1.3e-31 141.4 271 32.5
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.3e-28 130.6 127 52.0
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 3.1e-25 120.2 75 77.3
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 1.2e-24 118.2 84 73.8
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 9.9e-24 115.2 76 67.1
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 1.1e-22 111.7 89 59.6
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.9e-22 110.9 168 36.9
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 1.2e-21 108.2 181 40.3
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 1.9e-19 100.9 57 80.7
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 1.3e-18 98.2 66 75.8
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.5e-16 91.3 84 54.8
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 9.6e-11 72.0 179 29.1
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.1e-09 68.6 81 48.1
CAN.G1019.1 Capsicum annuum HOM05D004037 ORTHO05D004744 5.8e-08 62.8 59 52.5
Lsat_1_v5_gn_5_112181 Lactuca sativa HOM05D002510 ORTHO05D007210 7.2e-06 55.8 29 86.2


User provided reference genes

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