Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0133181 Helianthus annuus HOM05D003488 ORTHO05D004214 4.0e-50 201.1 96 100.0
HanXRQChr02g0044451 Helianthus annuus HOM05D003488 ORTHO05D004214 1.0e-37 159.8 83 92.8
Lsat_1_v5_gn_8_76881 Lactuca sativa HOM05D003488 ORTHO05D004214 1.9e-36 155.6 83 90.4
Peaxi162Scf00290g00084 Petunia axillaris HOM05D003488 ORTHO05D004214 5.6e-36 154.1 83 88.0
MSTRG.26643 Avicennia marina HOM05D003488 ORTHO05D004214 9.5e-36 153.3 83 85.5
Nitab4.5_0001725g0160 Nicotiana tabacum HOM05D003488 ORTHO05D004214 9.5e-36 153.3 83 86.7
Dinv21216 Davidia involucrata HOM05D003488 ORTHO05D004214 1.2e-35 152.9 83 90.4
Nitab4.5_0005483g0030 Nicotiana tabacum HOM05D003488 ORTHO05D004214 1.2e-35 152.9 83 86.7
CAN.G397.11 Capsicum annuum HOM05D003488 ORTHO05D004214 2.1e-35 152.1 83 85.5
Migut.J01046 Erythranthe guttata HOM05D003488 ORTHO05D004214 3.6e-35 151.4 83 85.5
FvH4_6g18580 Fragaria vesca HOM05D003488 ORTHO05D004214 3.6e-35 151.4 83 88.0
FAN05G0207 Fragaria x ananassa HOM05D003488 ORTHO05D004214 3.6e-35 151.4 83 88.0
FAN05G2045 Fragaria x ananassa HOM05D003488 ORTHO05D004214 3.6e-35 151.4 83 88.0
Sopen09g004200 Solanum pennellii HOM05D003488 ORTHO05D004214 4.7e-35 151.0 83 85.5
Peaxi162Scf00163g00052 Petunia axillaris HOM05D003488 ORTHO05D004214 6.1e-35 150.6 83 85.5
CAN.G1039.14 Capsicum annuum HOM05D003488 ORTHO05D004214 8.0e-35 150.2 83 83.1
Solyc09g009470.1 Solanum lycopersicum HOM05D003488 ORTHO05D004214 8.0e-35 150.2 83 84.3
Dinv31679 Davidia involucrata HOM05D003488 ORTHO05D004214 1.0e-34 149.8 83 86.7
PGSC0003DMG403002701 Solanum tuberosum HOM05D003488 ORTHO05D004214 1.0e-34 149.8 83 84.3
SalBow3G3938 Salvia bowleyana HOM05D003488 ORTHO05D004214 1.4e-34 149.4 83 83.1
Solyc10g083480.2 Solanum lycopersicum HOM05D003488 ORTHO05D004214 1.4e-34 149.4 83 83.1
Sopen10g032950 Solanum pennellii HOM05D003488 ORTHO05D004214 1.4e-34 149.4 83 83.1
PGSC0003DMG400028258 Solanum tuberosum HOM05D003488 ORTHO05D004214 1.4e-34 149.4 83 83.1
SGA_v2.0_scaffold75G24751 Striga asiatica HOM05D003488 ORTHO05D004214 1.8e-34 149.1 83 83.1
CSS0032778 Camellia sinensis var. sinensis HOM05D003488 ORTHO05D004214 2.3e-34 148.7 84 84.5
Manes.09G056000 Manihot esculenta HOM05D003488 ORTHO05D004214 3.1e-34 148.3 83 85.5
MSTRG.5840 Avicennia marina HOM05D003488 ORTHO05D004214 4.0e-34 147.9 83 83.1
ECA236G1444 Erigeron canadensis HOM05D003488 ORTHO05D004214 4.0e-34 147.9 83 85.5
FAN09G1414 Fragaria x ananassa HOM05D003488 ORTHO05D004214 4.0e-34 147.9 83 84.3
Nitab4.5_0000963g0070 Nicotiana tabacum HOM05D003488 ORTHO05D004214 5.2e-34 147.5 83 81.9
MD14G1022200 Malus domestica HOM05D003488 ORTHO05D004214 8.9e-34 146.7 83 85.5
Nitab4.5_0000132g0010 Nicotiana tabacum HOM05D003488 ORTHO05D004214 2.6e-33 145.2 83 80.7
GSVIVG01033833001 Vitis vinifera HOM05D003488 ORTHO05D004214 2.6e-33 145.2 83 84.3
TAR633G2222 Trochodendron aralioides HOM05D003488 ORTHO05D004214 5.8e-33 144.1 83 85.5
Oeu009221.1 Olea europaea HOM05D003488 ORTHO05D004214 1.3e-32 142.9 83 80.7
Rhsim03G0075900 Rhododendron simsii HOM05D003488 ORTHO05D004214 1.3e-32 142.9 83 80.7
DCAR_013382 Daucus carota HOM05D003488 ORTHO05D004214 1.7e-32 142.5 83 83.1
Manes.11G161600 Manihot esculenta HOM05D003488 ORTHO05D004214 1.7e-32 142.5 83 84.3
Hma1.2p1_0084F.1_g043700 Hydrangea macrophylla HOM05D003488 ORTHO05D004214 2.2e-32 142.1 84 83.3
Actinidia31274 Actinidia chinensis HOM05D003488 ORTHO05D004214 2.9e-32 141.7 83 80.7
Prupe.7G111200 Prunus persica HOM05D003488 ORTHO05D004214 2.9e-32 141.7 83 83.1
Ciclev10028521m.g Citrus clementina HOM05D003488 ORTHO05D004214 3.7e-32 141.4 83 83.1
Nn6g34912 Nelumbo nucifera HOM05D003488 ORTHO05D004214 4.9e-32 141.0 83 84.3
RcHm_v2.0_Chr3g0473131 Rosa chinensis HOM05D003488 ORTHO05D004214 4.9e-32 141.0 83 83.1
SGA_v2.0_scaffold13G06728 Striga asiatica HOM05D003488 ORTHO05D004214 4.9e-32 141.0 78 83.3
Nitab4.5_0013628g0020 Nicotiana tabacum HOM05D003488 ORTHO05D004214 6.4e-32 140.6 83 78.3
Cc06_g05690 Coffea canephora HOM05D003488 ORTHO05D004214 8.3e-32 140.2 83 79.5
MBI17_g08366_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 1.1e-31 139.8 83 83.1
Dinv29477 Davidia involucrata HOM05D003488 ORTHO05D004214 1.4e-31 139.4 83 84.3
Nitab4.5_0000755g0230 Nicotiana tabacum HOM05D003488 ORTHO05D004214 1.4e-31 139.4 83 77.1
PGR004G0231 Punica granatum HOM05D003488 ORTHO05D004214 1.4e-31 139.4 83 81.9
Potri.004G203300 Populus trichocarpa HOM05D003488 ORTHO05D004214 1.9e-31 139.0 83 83.1
GSVIVG01036133001 Vitis vinifera HOM05D003488 ORTHO05D004214 1.9e-31 139.0 83 81.9
Atru.chr3.3255 Acer truncatum HOM05D003488 ORTHO05D004214 2.4e-31 138.7 83 81.9
Rhsim01G0205200 Rhododendron simsii HOM05D003488 ORTHO05D004214 4.1e-31 137.9 83 83.1
Cpa.g.sc1448.1 Carica papaya HOM05D003488 ORTHO05D004214 5.4e-31 137.5 83 81.9
Actinidia35463 Actinidia chinensis HOM05D003488 ORTHO05D004214 9.2e-31 136.7 83 83.1
COL.COLO4_19885 Corchorus olitorius HOM05D003488 ORTHO05D004214 9.2e-31 136.7 83 79.5
Potri.009G164200 Populus trichocarpa HOM05D003488 ORTHO05D004214 9.2e-31 136.7 83 81.9
Prupe.6G129400 Prunus persica HOM05D003488 ORTHO05D004214 1.2e-30 136.3 83 79.5
Sabra04G0137300 Salix brachista HOM05D003488 ORTHO05D004214 1.2e-30 136.3 83 81.9
Aqoxy4G02784 Aquilegia oxysepala HOM05D003488 ORTHO05D004214 2.7e-30 135.2 83 80.7
PSO339G0354 Papaver somniferum HOM05D003488 ORTHO05D004214 3.5e-30 134.8 83 79.5
Peaxi162Scf00003g00057 Petunia axillaris HOM05D003488 ORTHO05D004214 3.5e-30 134.8 83 75.9
Sc20g0006250 Simmondsia chinensis HOM05D003488 ORTHO05D004214 3.5e-30 134.8 83 75.9
CiPaw.14G100300 Carya illinoinensis HOM05D003488 ORTHO05D004214 4.6e-30 134.4 83 78.3
AUR62036180 Chenopodium quinoa HOM05D003488 ORTHO05D004214 4.6e-30 134.4 83 79.5
Haze_19602 Corylus avellana HOM05D003488 ORTHO05D004214 4.6e-30 134.4 83 78.3
ATR0776G025 Amborella trichopoda HOM05D003488 ORTHO05D004214 6.0e-30 134.0 82 82.9
Cfa016600 Carpinus fangiana HOM05D003488 ORTHO05D004214 7.8e-30 133.7 83 78.3
AUR62009763 Chenopodium quinoa HOM05D003488 ORTHO05D004214 7.8e-30 133.7 83 79.5
Sc12g0004500 Simmondsia chinensis HOM05D003488 ORTHO05D004214 7.8e-30 133.7 83 79.5
THA.LOC104800533 Tarenaya hassleriana HOM05D003488 ORTHO05D004214 1.0e-29 133.3 83 79.5
PSO384G1288 Papaver somniferum HOM05D003488 ORTHO05D004214 1.3e-29 132.9 83 78.3
AT1G67190 Arabidopsis thaliana HOM05D003488 ORTHO05D004214 1.7e-29 132.5 83 79.5
Lalb_Chr02g0154961 Lupinus albus HOM05D003488 ORTHO05D004214 1.7e-29 132.5 83 77.1
TPR.G21934 Trifolium pratense HOM05D003488 ORTHO05D004214 1.7e-29 132.5 83 74.7
Ah.15g090910 Amaranthus hybridus HOM05D003488 ORTHO05D004214 2.3e-29 132.1 83 72.3
Duzib168G1363 Durio zibethinus HOM05D003488 ORTHO05D004214 2.3e-29 132.1 83 77.1
Lsat_1_v5_gn_6_38721 Lactuca sativa HOM05D003488 ORTHO05D004214 2.3e-29 132.1 83 77.1
Manes.04G004000 Manihot esculenta HOM05D003488 ORTHO05D004214 2.3e-29 132.1 83 78.3
QL01p012332 Quercus lobata HOM05D003488 ORTHO05D004214 3.0e-29 131.7 83 78.3
Lj1P237T11 Lonicera japonica HOM05D003488 ORTHO05D004214 3.9e-29 131.3 83 77.1
Thecc.09G284200 Theobroma cacao HOM05D003488 ORTHO05D004214 3.9e-29 131.3 83 77.1
MELO3C024542.2 Cucumis melo HOM05D003488 ORTHO05D004214 5.0e-29 131.0 83 77.1
Sopen11g027050 Solanum pennellii HOM05D003488 ORTHO05D004214 6.6e-29 130.6 83 73.5
AL2G25690 Arabidopsis lyrata HOM05D003488 ORTHO05D004214 8.6e-29 130.2 83 78.3
Carub.0002s1346 Capsella rubella HOM05D003488 ORTHO05D004214 8.6e-29 130.2 83 77.1
ClCG04G010010 Citrullus lanatus HOM05D003488 ORTHO05D004214 8.6e-29 130.2 81 79.0
Phvul.001G189500 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 8.6e-29 130.2 83 73.5
Ca_08884_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 1.1e-28 129.8 83 74.7
CsaV3_6G040650 Cucumis sativus L. HOM05D003488 ORTHO05D004214 1.1e-28 129.8 83 77.1
EL10Ac7g16924 Beta vulgaris HOM05D003488 ORTHO05D004214 1.5e-28 129.4 83 73.5
CARHR059640 Cardamine hirsuta HOM05D003488 ORTHO05D004214 1.5e-28 129.4 83 77.1
CSS0019661 Camellia sinensis var. sinensis HOM05D003488 ORTHO05D004214 1.9e-28 129.0 83 78.3
AUR62028536 Chenopodium quinoa HOM05D003488 ORTHO05D004214 2.5e-28 128.6 83 73.5
TWI31G0838 Tripterygium wilfordii HOM05D003488 ORTHO05D004214 2.5e-28 128.6 83 78.3
AUR62021589 Chenopodium quinoa HOM05D003488 ORTHO05D004214 3.3e-28 128.3 83 73.5
arahy.Tifrunner.gnm1.ann1.0J6PHG Arachis hypogaea HOM05D003488 ORTHO05D004214 4.3e-28 127.9 83 75.9
arahy.Tifrunner.gnm1.ann1.Q9WWUM Arachis hypogaea HOM05D003488 ORTHO05D004214 4.3e-28 127.9 83 75.9
Psat6g013800 Pisum sativum HOM05D003488 ORTHO05D004214 4.3e-28 127.9 82 75.6
Glyma.19G194600 Glycine max HOM05D003488 ORTHO05D004214 7.3e-28 127.1 83 69.9
AUR62006173 Chenopodium quinoa HOM05D003488 ORTHO05D004214 1.2e-27 126.3 83 72.3
Ca_19405_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 1.2e-27 126.3 83 75.9
Thhalv10018615m.g Eutrema salsugineum HOM05D003488 ORTHO05D004214 1.2e-27 126.3 83 75.9
Gohir.D07G113900 Gossypium hirsutum HOM05D003488 ORTHO05D004214 1.2e-27 126.3 83 75.9
Gorai.001G122200 Gossypium raimondii HOM05D003488 ORTHO05D004214 1.2e-27 126.3 83 75.9
HanXRQChr02g0054781 Helianthus annuus HOM05D003488 ORTHO05D004214 1.2e-27 126.3 83 75.9
Nitab4.5_0000216g0240 Nicotiana tabacum HOM05D003488 ORTHO05D004214 1.2e-27 126.3 82 73.2
Psat3g033640 Pisum sativum HOM05D003488 ORTHO05D004214 1.2e-27 126.3 83 68.7
Gohir.D09G095200 Gossypium hirsutum HOM05D003488 ORTHO05D004214 1.6e-27 125.9 83 74.7
Gorai.006G111900 Gossypium raimondii HOM05D003488 ORTHO05D004214 1.6e-27 125.9 83 74.7
BcaB03g15209 Brassica carinata HOM05D003488 ORTHO05D004214 2.1e-27 125.6 83 75.9
CDE08G1419 Ceratophyllum demersum HOM05D003488 ORTHO05D004214 2.1e-27 125.6 83 74.7
ECA233G3236 Erigeron canadensis HOM05D003488 ORTHO05D004214 2.1e-27 125.6 83 72.3
Ah.15g095780 Amaranthus hybridus HOM05D003488 ORTHO05D004214 2.8e-27 125.2 85 71.8
arahy.Tifrunner.gnm1.ann1.D6PK9F Arachis hypogaea HOM05D003488 ORTHO05D004214 2.8e-27 125.2 80 77.5
Psat4g110920 Pisum sativum HOM05D003488 ORTHO05D004214 2.8e-27 125.2 82 73.2
VMungo1127G1058 Vigna mungo HOM05D003488 ORTHO05D004214 2.8e-27 125.2 83 73.5
BcaC08g46148 Brassica carinata HOM05D003488 ORTHO05D004214 3.6e-27 124.8 83 74.7
A07p33820 Brassica napus HOM05D003488 ORTHO05D004214 3.6e-27 124.8 83 74.7
C06p43110 Brassica napus HOM05D003488 ORTHO05D004214 3.6e-27 124.8 83 74.7
BolC6t39128H Brassica oleracea HOM05D003488 ORTHO05D004214 3.6e-27 124.8 83 74.7
BraA07t31008Z Brassica rapa HOM05D003488 ORTHO05D004214 3.6e-27 124.8 83 74.7
Gohir.A07G110300 Gossypium hirsutum HOM05D003488 ORTHO05D004214 3.6e-27 124.8 83 74.7
HanXRQChr13g0397431 Helianthus annuus HOM05D003488 ORTHO05D004214 3.6e-27 124.8 83 74.7
VMungo1383G0237 Vigna mungo HOM05D003488 ORTHO05D004214 6.2e-27 124.0 83 68.7
Glyma.11G183600 Glycine max HOM05D003488 ORTHO05D004214 8.0e-27 123.6 83 72.3
Glyma.12G088900 Glycine max HOM05D003488 ORTHO05D004214 1.1e-26 123.2 83 73.5
SalBow5G1330 Salvia bowleyana HOM05D003488 ORTHO05D004214 1.1e-26 123.2 84 72.6
Medtr1g060040 Medicago truncatula HOM05D003488 ORTHO05D004214 1.4e-26 122.9 83 69.9
Medtr7g104490 Medicago truncatula HOM05D003488 ORTHO05D004214 1.4e-26 122.9 83 67.5
CDE06G0950 Ceratophyllum demersum HOM05D003488 ORTHO05D004214 1.8e-26 122.5 83 73.5
Psat0s2993g0200 Pisum sativum HOM05D003488 ORTHO05D004214 2.3e-26 122.1 83 74.7
CiPaw.13G136000 Carya illinoinensis HOM05D003488 ORTHO05D004214 3.1e-26 121.7 84 71.4
Sp5g22120 Schrenkiella parvula HOM05D003488 ORTHO05D004214 3.1e-26 121.7 83 73.5
TPR.G17200 Trifolium pratense HOM05D003488 ORTHO05D004214 3.1e-26 121.7 83 73.5
TPR.G19554 Trifolium pratense HOM05D003488 ORTHO05D004214 3.1e-26 121.7 83 67.5
Lj3g0011633 Lotus japonicus HOM05D003488 ORTHO05D004214 5.2e-26 120.9 83 73.5
Phvul.011G093800 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 5.2e-26 120.9 83 72.3
Medtr4g053260 Medicago truncatula HOM05D003488 ORTHO05D004214 6.8e-26 120.6 83 72.3
Lalb_Chr01g0004851 Lupinus albus HOM05D003488 ORTHO05D004214 8.9e-26 120.2 83 72.3
PGR102G1638 Punica granatum HOM05D003488 ORTHO05D004214 8.9e-26 120.2 83 69.9
SEGI_24231 Sequoiadendron giganteum HOM05D003488 ORTHO05D004214 8.9e-26 120.2 82 72.0
Psat0s2993g0360 Pisum sativum HOM05D003488 ORTHO05D004214 3.4e-25 118.2 80 75.0
Actinidia07930 Actinidia chinensis HOM05D003488 ORTHO05D004214 5.8e-25 117.5 70 80.0
Aa31LG2G3560 Aethionema arabicum HOM05D003488 ORTHO05D004214 5.8e-25 117.5 83 69.9
Phvul.011G094000 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 5.8e-25 117.5 83 69.9
Nitab4.5_0000202g0240 Nicotiana tabacum HOM05D003488 ORTHO05D004214 7.5e-25 117.1 82 69.5
HPP92_003226 Vanilla planifolia HOM05D003488 ORTHO05D004214 2.2e-24 115.5 84 67.9
TPR.G11390 Trifolium pratense HOM05D003488 ORTHO05D004214 4.9e-24 114.4 83 63.9
Eucgr.A01498 Eucalyptus grandis HOM05D003488 ORTHO05D004214 8.3e-24 113.6 83 65.1
CANSAT54G1372 Cannabis sativa HOM05D003488 ORTHO05D004214 4.1e-23 111.3 81 70.4
Os01g0859600 Oryza sativa ssp. japonica HOM05D003488 ORTHO05D004214 1.6e-22 109.4 83 65.1
Pp3c25_4500 Physcomitrium patens HOM05D003488 ORTHO05D004214 1.6e-22 109.4 82 67.1
CiPaw.13G136100 Carya illinoinensis HOM05D003488 ORTHO05D004214 3.5e-22 108.2 85 65.9
Ca_08999_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 7.8e-22 107.1 83 61.4
Zm00001eb147200 Zea mays HOM05D003488 ORTHO05D004214 1.3e-21 106.3 84 65.5
Mapoly0037s0051 Marchantia polymorpha HOM05D003488 ORTHO05D004214 1.7e-21 105.9 82 65.9
Sed0023871 Sechium edule HOM05D003488 ORTHO05D004214 8.6e-21 103.6 83 67.5
AagrBONN_evm.TU.Sc2ySwM_368.174 Anthoceros agrestis HOM05D003488 ORTHO05D004214 2.5e-20 102.1 84 60.7
Hund18755 Selenicereus undatus HOM05D003488 ORTHO05D004214 9.5e-20 100.1 67 71.6
Eucgr.B03854 Eucalyptus grandis HOM05D003488 ORTHO05D004214 1.6e-19 99.4 83 60.2
Peaxi162Scf00094g00163 Petunia axillaris HOM05D003488 ORTHO05D004214 1.6e-19 99.4 62 75.8
THA.LOC104815726 Tarenaya hassleriana HOM05D003488 ORTHO05D004214 2.8e-19 98.6 84 61.9
Lsat_1_v5_gn_9_103040 Lactuca sativa HOM05D003488 ORTHO05D004214 6.2e-19 97.4 75 68.0
SEGI_39785 Sequoiadendron giganteum HOM05D003488 ORTHO05D004214 6.8e-18 94.0 82 61.0
CiPaw.13G136300 Carya illinoinensis HOM05D003488 ORTHO05D004214 1.7e-16 89.4 98 51.0
Lalb_Chr19g0136481 Lupinus albus HOM05D003488 ORTHO05D004214 2.2e-16 89.0 59 69.5
CANSAT80G2309 Cannabis sativa HOM05D003488 ORTHO05D004214 4.9e-16 87.8 83 49.4
CANSAT80G1046 Cannabis sativa HOM05D003488 ORTHO05D004214 1.6e-14 82.8 83 47.0
MBI05_g08793_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 1.2e-11 73.2 84 45.2
MBI05_g43550_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 1.2e-11 73.2 84 45.2
THA.LOC104824558 Tarenaya hassleriana HOM05D003488 ORTHO05D004214 3.6e-11 71.6 80 50.0
CAN.G1358.15 Capsicum annuum HOM05D003488 ORTHO05D004214 2.4e-10 68.9 52 67.3
PGR102G1861 Punica granatum HOM05D003488 ORTHO05D004214 2.6e-09 65.5 60 56.7


User provided reference genes

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