Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 4.4e-167 591.3 307 100.0
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 2.6e-127 459.1 309 77.3
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 7.5e-127 457.6 305 79.3
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 7.0e-125 451.1 297 80.8
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 1.0e-107 394.0 306 68.6
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 3.8e-102 375.6 314 65.0
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 3.8e-102 375.6 306 65.0
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 8.4e-102 374.4 310 64.2
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 5.4e-101 371.7 314 64.0
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 2.7e-100 369.4 307 64.5
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 1.0e-99 367.5 261 72.4
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 1.0e-99 367.5 261 70.5
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 1.3e-99 367.1 308 64.3
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 5.1e-99 365.2 316 63.9
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 6.6e-99 364.8 320 63.1
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 6.6e-99 364.8 320 63.1
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 8.7e-99 364.4 310 64.2
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.1e-98 364.0 309 65.4
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 2.5e-98 362.8 309 65.4
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 2.5e-98 362.8 264 70.1
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 3.3e-98 362.5 310 62.9
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 3.3e-98 362.5 301 65.1
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 5.6e-98 361.7 320 63.8
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 9.6e-98 360.9 307 65.1
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 9.6e-98 360.9 309 64.1
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 1.6e-97 360.1 312 65.4
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 2.8e-97 359.4 261 70.9
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 8.1e-97 357.8 286 68.2
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 8.1e-97 357.8 303 66.7
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 1.1e-96 357.5 312 61.9
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 4.0e-96 355.5 307 64.5
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 5.3e-96 355.1 310 61.6
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 6.9e-96 354.8 257 69.3
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 2.0e-95 353.2 270 69.6
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 2.6e-95 352.8 318 61.6
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 2.6e-95 352.8 304 62.8
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 2.6e-95 352.8 313 62.9
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 2.6e-95 352.8 309 62.5
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 3.4e-95 352.4 306 62.4
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 4.5e-95 352.1 313 62.9
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 1.3e-94 350.5 261 69.7
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 1.3e-94 350.5 306 62.4
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 3.8e-94 349.0 307 63.5
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 3.8e-94 349.0 304 63.2
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 4.9e-94 348.6 316 60.8
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 4.9e-94 348.6 301 62.8
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.1e-93 347.4 248 69.4
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 1.4e-93 347.1 261 67.8
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.4e-93 346.3 308 62.3
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 2.4e-93 346.3 308 62.3
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 4.2e-93 345.5 309 61.2
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 1.2e-92 344.0 303 62.0
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 2.1e-92 343.2 307 59.9
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 3.5e-92 342.4 320 60.0
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 3.5e-92 342.4 302 62.3
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 1.7e-91 340.1 257 68.5
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.7e-91 340.1 265 65.3
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.3e-91 339.7 263 66.2
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 3.0e-91 339.3 309 60.8
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 3.9e-91 339.0 306 62.7
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 6.6e-91 338.2 251 66.5
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 6.6e-91 338.2 319 58.3
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.5e-90 337.0 263 65.4
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 1.5e-90 337.0 292 59.6
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.9e-90 336.7 297 62.0
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 3.3e-90 335.9 324 58.3
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 5.6e-90 335.1 305 60.3
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 5.6e-90 335.1 305 60.3
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 5.6e-90 335.1 280 64.3
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 9.6e-90 334.3 265 66.0
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 9.6e-90 334.3 257 66.9
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 1.6e-89 333.6 260 65.0
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 2.1e-89 333.2 304 58.6
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 2.1e-89 333.2 285 64.2
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 2.1e-89 333.2 264 64.4
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 3.6e-89 332.4 290 60.0
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 3.6e-89 332.4 313 59.1
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 4.8e-89 332.0 258 64.7
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 6.2e-89 331.6 296 60.1
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 6.2e-89 331.6 264 64.0
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 1.1e-88 330.9 303 60.1
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.1e-88 330.9 240 68.3
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 4.0e-88 328.9 260 64.2
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 4.0e-88 328.9 305 59.7
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 1.2e-87 327.4 294 62.2
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.5e-87 327.0 302 57.9
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 2.0e-87 326.6 263 63.9
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.6e-87 326.2 344 52.0
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 1.3e-86 323.9 240 66.2
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 1.7e-86 323.6 304 57.6
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 2.2e-86 323.2 300 58.0
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 2.2e-86 323.2 304 57.6
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 2.2e-86 323.2 300 58.0
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 2.9e-86 322.8 268 63.8
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 2.9e-86 322.8 292 58.2
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 3.8e-86 322.4 294 57.5
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 3.8e-86 322.4 308 58.1
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 6.4e-86 321.6 300 57.7
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.4e-85 320.5 249 63.1
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 1.4e-85 320.5 301 55.8
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.9e-85 320.1 292 57.2
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 2.4e-85 319.7 299 57.2
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 4.2e-85 318.9 318 55.7
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 7.1e-85 318.2 240 66.7
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 2.1e-84 316.6 287 57.5
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.7e-84 316.2 293 57.3
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 2.7e-84 316.2 303 57.1
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 2.7e-84 316.2 282 61.7
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.8e-83 313.5 283 59.0
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 3.9e-83 312.4 266 60.9
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 1.1e-82 310.8 250 62.0
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 4.3e-82 308.9 257 63.8
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.8e-81 305.4 273 64.5
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 8.1e-81 304.7 267 62.9
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 2.4e-80 303.1 244 62.3
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 1.2e-79 300.8 256 62.9
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.5e-79 300.4 266 63.2
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 1.0e-78 297.7 243 63.0
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 3.8e-78 295.8 294 55.8
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 6.5e-78 295.0 249 57.8
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 8.4e-78 294.7 381 49.6
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 3.2e-77 292.7 274 55.5
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 1.8e-75 287.0 298 56.7
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.0e-75 286.2 330 53.0
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 5.1e-75 285.4 332 53.0
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 1.8e-72 276.9 301 53.2
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 3.1e-72 276.2 260 57.7
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 3.2e-69 266.2 281 55.9
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 8.7e-67 258.1 230 57.4
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.9e-66 256.9 302 49.7
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 2.5e-66 256.5 292 49.7
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 5.9e-63 245.4 259 47.9
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 3.2e-61 239.6 235 51.1
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 1.5e-58 230.7 225 54.2
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 1.7e-57 227.3 242 49.2
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 2.2e-57 226.9 230 54.3
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 3.7e-57 226.1 171 64.3
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 8.5e-54 214.9 422 36.7
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 9.4e-53 211.5 190 62.1
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 1.6e-52 210.7 256 45.7
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 8.2e-49 198.4 254 44.1
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 5.3e-48 195.7 136 72.8
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 3.2e-45 186.4 129 72.1
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.1e-44 183.7 321 40.5
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 3.0e-43 179.9 135 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 2.6e-42 176.8 176 50.0
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 2.8e-28 130.2 118 55.1
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 3.1e-24 116.7 97 57.7
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 5.0e-22 109.4 74 75.7
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 9.8e-18 95.1 73 69.9
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.1e-16 91.7 73 57.5
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.6e-12 77.8 186 34.4
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 6.8e-11 72.4 68 51.5
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 3.4e-10 70.1 52 65.4
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 3.4e-10 70.1 82 40.2
unitig_744.g24517 Utricularia gibba HOM05D002234 ORTHO05D002254 1.1e-08 65.1 244 28.3
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 3.2e-08 63.5 51 70.6
DCAR_027858 Daucus carota HOM05D002234 ORTHO05D002254 4.1e-08 63.2 244 27.0
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 4.1e-08 63.2 201 26.9
CANSAT21G1663 Cannabis sativa HOM05D002234 ORTHO05D002254 9.2e-08 62.0 206 30.6
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 9.2e-08 62.0 206 24.3
CSS0001852 Camellia sinensis var. sinensis HOM05D002234 ORTHO05D002254 2.0e-07 60.8 207 25.6
Zm00001eb024700 Zea mays HOM05D002234 ORTHO05D002254 2.0e-07 60.8 208 24.5
SMO367G0795 Selaginella moellendorffii HOM05D002234 ORTHO05D002254 2.3e-06 57.4 244 25.8
HPP92_002996 Vanilla planifolia HOM05D004474 ORTHO05D432408 5.0e-06 56.2 37 78.4


User provided reference genes

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