Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 1.5e-141 506.1 255 100.0
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 1.7e-95 353.2 255 70.6
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 3.4e-88 328.9 250 68.4
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 1.1e-75 287.3 178 76.4
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 2.5e-75 286.2 265 56.6
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 2.5e-75 286.2 203 69.0
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 3.3e-75 285.8 179 75.4
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 9.5e-75 284.3 211 66.8
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 9.5e-75 284.3 184 74.5
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 2.1e-74 283.1 247 59.5
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 2.1e-74 283.1 256 60.5
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 3.6e-74 282.3 266 56.8
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 2.3e-73 279.6 269 58.0
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 4.0e-73 278.9 204 67.2
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 5.2e-73 278.5 178 74.7
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 8.9e-73 277.7 178 75.3
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 8.9e-73 277.7 252 59.9
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 1.2e-72 277.3 255 57.3
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 1.2e-72 277.3 255 57.3
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 1.2e-72 277.3 209 67.0
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 2.0e-72 276.6 184 73.4
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 2.6e-72 276.2 261 56.3
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 7.5e-72 274.6 200 67.5
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 7.5e-72 274.6 179 73.7
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 1.3e-71 273.9 185 73.0
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.7e-71 273.5 205 65.9
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 1.7e-71 273.5 180 73.9
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 6.3e-71 271.6 186 72.0
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 6.3e-71 271.6 240 60.8
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 6.3e-71 271.6 264 57.6
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 8.3e-71 271.2 271 55.4
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 1.4e-70 270.4 264 57.2
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 1.8e-70 270.0 265 57.0
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 3.2e-70 269.2 262 56.1
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 5.4e-70 268.5 195 68.2
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 1.2e-69 267.3 225 62.7
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 2.0e-69 266.5 211 64.5
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 2.0e-69 266.5 257 58.0
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.0e-69 266.5 247 58.3
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 2.0e-69 266.5 238 60.1
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 2.7e-69 266.2 213 63.8
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 7.8e-69 264.6 255 58.4
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 1.0e-68 264.2 254 56.3
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 1.3e-68 263.8 252 59.5
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 8.6e-68 261.2 163 76.7
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 1.9e-67 260.0 248 57.7
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.9e-67 260.0 250 57.2
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 3.3e-67 259.2 178 69.7
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 7.3e-67 258.1 254 55.1
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 9.5e-67 257.7 179 70.4
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 1.6e-66 256.9 192 65.1
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 2.1e-66 256.5 247 55.9
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 2.1e-66 256.5 192 67.2
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 2.8e-66 256.1 205 63.9
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 4.7e-66 255.4 188 67.6
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.0e-65 254.2 205 63.4
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 1.4e-65 253.8 260 55.4
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 1.8e-65 253.4 256 54.7
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 1.8e-65 253.4 247 57.5
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 1.8e-65 253.4 204 61.8
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 2.3e-65 253.1 260 55.8
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 2.3e-65 253.1 259 54.4
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.0e-65 252.3 155 78.1
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 4.0e-65 252.3 255 54.9
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 4.0e-65 252.3 266 54.1
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 5.2e-65 251.9 178 70.2
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 6.8e-65 251.5 182 67.0
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 6.8e-65 251.5 255 55.3
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 6.8e-65 251.5 187 65.8
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 6.8e-65 251.5 178 70.2
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 8.9e-65 251.1 255 55.7
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 8.9e-65 251.1 226 59.3
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 1.2e-64 250.8 261 54.0
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.5e-64 250.4 223 58.7
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 2.0e-64 250.0 266 55.3
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 2.0e-64 250.0 261 54.0
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 9.8e-64 247.7 250 56.0
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 1.3e-63 247.3 247 56.7
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 8.3e-63 244.6 226 58.4
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 8.3e-63 244.6 226 58.4
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 8.3e-63 244.6 215 60.9
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 7.0e-62 241.5 226 58.0
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 1.6e-61 240.4 223 59.2
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 2.7e-61 239.6 170 66.5
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 1.0e-60 237.7 185 62.2
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 1.0e-60 237.7 185 62.2
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 1.7e-60 236.9 178 64.0
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.3e-60 236.5 247 53.8
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 5.0e-60 235.3 179 65.9
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 6.6e-60 235.0 216 56.5
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 1.1e-57 227.6 270 50.7
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 3.1e-57 226.1 208 58.2
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 3.1e-57 226.1 229 52.8
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 1.2e-56 224.2 182 59.9
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 2.6e-56 223.0 229 55.5
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 2.9e-55 219.5 247 52.2
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 6.4e-55 218.4 267 47.6
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 3.2e-54 216.1 214 55.1
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 9.2e-54 214.5 181 59.7
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 2.1e-53 213.4 265 46.8
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 8.6e-52 208.0 170 60.6
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 1.5e-51 207.2 117 79.5
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 3.2e-46 189.5 134 68.7
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 5.4e-46 188.7 227 50.7
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 3.0e-44 183.0 247 44.1
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 1.9e-38 163.7 242 40.1
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 2.5e-35 153.3 90 75.6
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 2.0e-32 143.7 193 42.0
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.7e-31 140.6 148 54.7
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 1.7e-28 130.6 105 66.7
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 1.7e-28 130.6 113 62.8
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 1.5e-27 127.5 94 69.1
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 5.8e-24 115.5 116 52.6
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 7.6e-24 115.2 171 39.2
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 2.9e-23 113.2 182 44.0
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 6.0e-21 105.5 158 42.4
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.5e-16 90.9 84 54.8
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 7.6e-16 88.6 97 50.5
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 5.5e-14 82.4 105 41.9
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 3.5e-13 79.7 118 44.9
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 6.0e-13 79.0 102 40.2
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 3.4e-08 63.2 55 60.0
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.7e-07 60.8 157 34.4
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.7e-07 60.8 157 34.4
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 3.8e-07 59.7 159 34.0
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.1e-06 58.2 148 31.8
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 2.5e-06 57.0 32 71.9
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 3.2e-06 56.6 103 33.0


User provided reference genes

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