Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0132151 Helianthus annuus HOM05D002706 ORTHO05D003253 7.0e-26 119.8 58 100.0
HanXRQChr03g0077631 Helianthus annuus HOM05D002706 ORTHO05D003253 2.4e-18 94.7 55 80.0
HanXRQChr03g0077621 Helianthus annuus HOM05D002706 ORTHO05D003253 7.0e-18 93.2 54 79.6
HanXRQChr05g0132181 Helianthus annuus HOM05D002706 ORTHO05D003253 7.0e-18 93.2 55 80.0
HanXRQChr13g0392881 Helianthus annuus HOM05D002706 ORTHO05D003253 2.0e-17 91.7 55 78.2
HanXRQChr10g0297421 Helianthus annuus HOM05D002706 ORTHO05D003253 4.6e-17 90.5 54 77.8
RhsimUnG0025800 Rhododendron simsii HOM05D002706 ORTHO05D003253 7.8e-17 89.7 56 75.0
Nitab4.5_0004280g0080 Nicotiana tabacum HOM05D002706 ORTHO05D003253 1.0e-16 89.4 54 75.9
Peaxi162Scf00111g00823 Petunia axillaris HOM05D002706 ORTHO05D003253 1.7e-16 88.6 54 75.9
Nitab4.5_0002495g0060 Nicotiana tabacum HOM05D002706 ORTHO05D003253 2.3e-16 88.2 55 72.7
TAR375G1142 Trochodendron aralioides HOM05D002706 ORTHO05D003253 2.3e-16 88.2 54 75.9
Nitab4.5_0001662g0040 Nicotiana tabacum HOM05D002706 ORTHO05D003253 3.0e-16 87.8 54 74.1
Rhsim06G0185200 Rhododendron simsii HOM05D002706 ORTHO05D003253 3.0e-16 87.8 54 74.1
RhsimUnG0028400 Rhododendron simsii HOM05D002706 ORTHO05D003253 3.0e-16 87.8 54 74.1
GSVIVG01019752001 Vitis vinifera HOM05D002706 ORTHO05D003253 3.0e-16 87.8 55 72.7
Hma1.2p1_0325F.1_g125930 Hydrangea macrophylla HOM05D002706 ORTHO05D003253 3.9e-16 87.4 55 74.5
Lsat_1_v5_gn_3_114641 Lactuca sativa HOM05D002706 ORTHO05D003253 6.6e-16 86.7 55 70.9
Nn1g04262 Nelumbo nucifera HOM05D002706 ORTHO05D003253 6.6e-16 86.7 54 75.9
COL.COLO4_31141 Corchorus olitorius HOM05D002706 ORTHO05D003253 8.6e-16 86.3 55 70.9
PGSC0003DMG400025166 Solanum tuberosum HOM05D002706 ORTHO05D003253 8.6e-16 86.3 54 74.1
PSO528G0166 Papaver somniferum HOM05D002706 ORTHO05D003253 1.1e-15 85.9 54 74.1
Solyc01g109360.3 Solanum lycopersicum HOM05D002706 ORTHO05D003253 1.1e-15 85.9 54 74.1
Sopen01g051550 Solanum pennellii HOM05D002706 ORTHO05D003253 1.1e-15 85.9 54 74.1
vmacro11878 Vaccinium macrocarpon HOM05D002706 ORTHO05D003253 1.1e-15 85.9 56 71.4
CAN.G322.108 Capsicum annuum HOM05D002706 ORTHO05D003253 1.5e-15 85.5 54 70.4
Eucgr.K00934 Eucalyptus grandis HOM05D002706 ORTHO05D003253 1.5e-15 85.5 54 72.2
Medtr1g053270 Medicago truncatula HOM05D002706 ORTHO05D003253 1.5e-15 85.5 54 72.2
Sabra08G0006100 Salix brachista HOM05D002706 ORTHO05D003253 1.9e-15 85.1 55 72.7
Actinidia35174 Actinidia chinensis HOM05D002706 ORTHO05D003253 2.5e-15 84.7 54 72.2
Potri.010G248900 Populus trichocarpa HOM05D002706 ORTHO05D003253 2.5e-15 84.7 55 70.9
ECA234G0431 Erigeron canadensis HOM05D002706 ORTHO05D003253 3.3e-15 84.3 55 69.1
unitig_62.g23090 Utricularia gibba HOM05D002706 ORTHO05D003253 3.3e-15 84.3 54 72.2
CiPaw.11G135000 Carya illinoinensis HOM05D002706 ORTHO05D003253 4.3e-15 84.0 54 70.4
Eucgr.A00956 Eucalyptus grandis HOM05D002706 ORTHO05D003253 4.3e-15 84.0 54 70.4
Manes.01G016300 Manihot esculenta HOM05D002706 ORTHO05D003253 4.3e-15 84.0 55 67.3
PSO170G0959 Papaver somniferum HOM05D002706 ORTHO05D003253 4.3e-15 84.0 54 72.2
Cpa.g.sc13.153 Carica papaya HOM05D002706 ORTHO05D003253 5.6e-15 83.6 54 70.4
Cc05_g10340 Coffea canephora HOM05D002706 ORTHO05D003253 5.6e-15 83.6 55 67.3
CsaV3_5G002780 Cucumis sativus L. HOM05D002706 ORTHO05D003253 5.6e-15 83.6 54 68.5
ECA234G1375 Erigeron canadensis HOM05D002706 ORTHO05D003253 5.6e-15 83.6 55 67.3
Psat6g116280 Pisum sativum HOM05D002706 ORTHO05D003253 5.6e-15 83.6 54 70.4
TAR626G1221 Trochodendron aralioides HOM05D002706 ORTHO05D003253 5.6e-15 83.6 54 70.4
MELO3C005679.2 Cucumis melo HOM05D002706 ORTHO05D003253 7.3e-15 83.2 54 68.5
SGA_v2.0_scaffold181G39798 Striga asiatica HOM05D002706 ORTHO05D003253 7.3e-15 83.2 55 69.1
TPR.G29099 Trifolium pratense HOM05D002706 ORTHO05D003253 7.3e-15 83.2 54 70.4
Actinidia18846 Actinidia chinensis HOM05D002706 ORTHO05D003253 9.5e-15 82.8 54 70.4
Manes.05G136800 Manihot esculenta HOM05D002706 ORTHO05D003253 9.5e-15 82.8 55 65.5
Phvul.002G027700 Phaseolus vulgaris HOM05D002706 ORTHO05D003253 9.5e-15 82.8 54 68.5
Sabra10G0193900 Salix brachista HOM05D002706 ORTHO05D003253 9.5e-15 82.8 55 69.1
CANSAT80G1781 Cannabis sativa HOM05D002706 ORTHO05D003253 1.2e-14 82.4 54 68.5
ECA240G0438 Erigeron canadensis HOM05D002706 ORTHO05D003253 1.2e-14 82.4 55 65.5
Oeu026467.1 Olea europaea HOM05D002706 ORTHO05D003253 1.2e-14 82.4 54 68.5
Thecc.06G055700 Theobroma cacao HOM05D002706 ORTHO05D003253 1.2e-14 82.4 54 68.5
Duzib160G0388 Durio zibethinus HOM05D002706 ORTHO05D003253 1.6e-14 82.0 54 68.5
Duzib192G0782 Durio zibethinus HOM05D002706 ORTHO05D003253 1.6e-14 82.0 55 67.3
Lj1A816G36 Lonicera japonica HOM05D002706 ORTHO05D003253 1.6e-14 82.0 54 70.4
Prupe.5G096900 Prunus persica HOM05D002706 ORTHO05D003253 1.6e-14 82.0 54 72.2
Sc01g0009590 Simmondsia chinensis HOM05D002706 ORTHO05D003253 1.6e-14 82.0 54 70.4
Gohir.A05G115200 Gossypium hirsutum HOM05D002706 ORTHO05D003253 2.1e-14 81.6 54 70.4
Gohir.D05G115700 Gossypium hirsutum HOM05D002706 ORTHO05D003253 2.1e-14 81.6 54 70.4
Gorai.009G119700 Gossypium raimondii HOM05D002706 ORTHO05D003253 2.1e-14 81.6 54 70.4
vmacro17392 Vaccinium macrocarpon HOM05D002706 ORTHO05D003253 2.1e-14 81.6 55 69.1
Prupe.5G100500 Prunus persica HOM05D002706 ORTHO05D003253 2.8e-14 81.3 54 70.4
Sc22g0005590 Simmondsia chinensis HOM05D002706 ORTHO05D003253 2.8e-14 81.3 54 66.7
Atru.chr9.991 Acer truncatum HOM05D002706 ORTHO05D003253 3.6e-14 80.9 54 70.4
Aqoxy5G03847 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 3.6e-14 80.9 54 64.8
CSS0015343 Camellia sinensis var. sinensis HOM05D002706 ORTHO05D003253 3.6e-14 80.9 55 69.1
CSS0015711 Camellia sinensis var. sinensis HOM05D002706 ORTHO05D003253 3.6e-14 80.9 55 69.1
Cfa015720 Carpinus fangiana HOM05D002706 ORTHO05D003253 3.6e-14 80.9 54 68.5
Lj5g0021295 Lotus japonicus HOM05D002706 ORTHO05D003253 3.6e-14 80.9 54 68.5
CiPaw.12G092900 Carya illinoinensis HOM05D002706 ORTHO05D003253 4.7e-14 80.5 54 66.7
PGR031G1433 Punica granatum HOM05D002706 ORTHO05D003253 4.7e-14 80.5 54 68.5
TWI32G0184 Tripterygium wilfordii HOM05D002706 ORTHO05D003253 4.7e-14 80.5 54 70.4
ECA232G2232 Erigeron canadensis HOM05D002706 ORTHO05D003253 6.2e-14 80.1 55 61.8
QL10p062797 Quercus lobata HOM05D002706 ORTHO05D003253 6.2e-14 80.1 54 68.5
MSTRG.15013 Avicennia marina HOM05D002706 ORTHO05D003253 8.1e-14 79.7 54 66.7
MSTRG.6719 Avicennia marina HOM05D002706 ORTHO05D003253 8.1e-14 79.7 54 66.7
Sed0009702 Sechium edule HOM05D002706 ORTHO05D003253 8.1e-14 79.7 54 68.5
THA.LOC104812293 Tarenaya hassleriana HOM05D002706 ORTHO05D003253 8.1e-14 79.7 54 64.8
CSS0016628 Camellia sinensis var. sinensis HOM05D002706 ORTHO05D003253 1.1e-13 79.3 54 68.5
CSS0035683 Camellia sinensis var. sinensis HOM05D002706 ORTHO05D003253 1.1e-13 79.3 54 68.5
CSS0045890 Camellia sinensis var. sinensis HOM05D002706 ORTHO05D003253 1.1e-13 79.3 54 68.5
Ca_26354_v3 Cicer arietinum L. HOM05D002706 ORTHO05D003253 1.1e-13 79.3 54 66.7
MD04G1034100 Malus domestica HOM05D002706 ORTHO05D003253 1.8e-13 78.6 54 68.5
MD06G1084100 Malus domestica HOM05D002706 ORTHO05D003253 1.8e-13 78.6 54 68.5
QL12p032909 Quercus lobata HOM05D002706 ORTHO05D003253 1.8e-13 78.6 54 66.7
SGA_v2.0_scaffold73G24346 Striga asiatica HOM05D002706 ORTHO05D003253 1.8e-13 78.6 55 63.6
Lj4g0027951 Lotus japonicus HOM05D002706 ORTHO05D003253 2.3e-13 78.2 54 66.7
Sed0016965 Sechium edule HOM05D002706 ORTHO05D003253 2.3e-13 78.2 54 66.7
Hund23521 Selenicereus undatus HOM05D002706 ORTHO05D003253 2.3e-13 78.2 54 64.8
arahy.Tifrunner.gnm1.ann1.0UMA9Y Arachis hypogaea HOM05D002706 ORTHO05D003253 3.1e-13 77.8 54 61.1
arahy.Tifrunner.gnm1.ann1.SSK3YK Arachis hypogaea HOM05D002706 ORTHO05D003253 3.1e-13 77.8 54 61.1
Lalb_Chr21g0306921 Lupinus albus HOM05D002706 ORTHO05D003253 4.0e-13 77.4 54 66.7
Ah.11g047900 Amaranthus hybridus HOM05D002706 ORTHO05D003253 5.2e-13 77.0 54 66.7
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 5.2e-13 77.0 54 63.0
CSS0000203 Camellia sinensis var. sinensis HOM05D002706 ORTHO05D003253 5.2e-13 77.0 54 66.7
QL05p016520 Quercus lobata HOM05D002706 ORTHO05D003253 5.2e-13 77.0 54 64.8
Rhsim05G0015300 Rhododendron simsii HOM05D002706 ORTHO05D003253 5.2e-13 77.0 54 64.8
RcHm_v2.0_Chr5g0057181 Rosa chinensis HOM05D002706 ORTHO05D003253 5.2e-13 77.0 55 61.8
HPP92_022522 Vanilla planifolia HOM05D002706 ORTHO05D003253 5.2e-13 77.0 55 65.5
ATR0706G210 Amborella trichopoda HOM05D002706 ORTHO05D003253 6.8e-13 76.6 54 64.8
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 6.8e-13 76.6 55 61.8
Atru.chr12.1398 Acer truncatum HOM05D002706 ORTHO05D003253 8.9e-13 76.3 54 68.5
CDE04G3144 Ceratophyllum demersum HOM05D002706 ORTHO05D003253 8.9e-13 76.3 54 64.8
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 8.9e-13 76.3 56 62.5
Glyma.11G065500 Glycine max HOM05D002706 ORTHO05D003253 8.9e-13 76.3 54 63.0
AagrBONN_evm.TU.Sc2ySwM_228.3911 Anthoceros agrestis HOM05D002706 ORTHO05D003253 1.2e-12 75.9 54 63.0
CARHR027840 Cardamine hirsuta HOM05D002706 ORTHO05D003253 1.2e-12 75.9 54 63.0
COL.COLO4_12902 Corchorus olitorius HOM05D002706 ORTHO05D003253 1.2e-12 75.9 55 63.6
Medtr1g007325 Medicago truncatula HOM05D002706 ORTHO05D003253 1.2e-12 75.9 54 64.8
vmacro12011 Vaccinium macrocarpon HOM05D002706 ORTHO05D003253 1.2e-12 75.9 72 55.6
Lj5g0024819 Lotus japonicus HOM05D002706 ORTHO05D003253 1.5e-12 75.5 54 63.0
Sp1g24590 Schrenkiella parvula HOM05D002706 ORTHO05D003253 1.5e-12 75.5 55 63.6
TWI60G1149 Tripterygium wilfordii HOM05D002706 ORTHO05D003253 1.5e-12 75.5 54 68.5
Aa31LG6G10410 Aethionema arabicum HOM05D002706 ORTHO05D003253 2.0e-12 75.1 54 61.1
AL1G41950 Arabidopsis lyrata HOM05D002706 ORTHO05D003253 2.0e-12 75.1 54 63.0
AagrBONN_evm.TU.Sc2ySwM_368.2209 Anthoceros agrestis HOM05D002706 ORTHO05D003253 3.4e-12 74.3 54 61.1
AT2G33840 Arabidopsis thaliana HOM05D002706 ORTHO05D003253 3.4e-12 74.3 54 61.1
Carub.0001s2681 Capsella rubella HOM05D002706 ORTHO05D003253 3.4e-12 74.3 54 63.0
ECA248G3421 Erigeron canadensis HOM05D002706 ORTHO05D003253 3.4e-12 74.3 54 64.8
AL4G29620 Arabidopsis lyrata HOM05D002706 ORTHO05D003253 4.4e-12 73.9 54 61.1
Glyma.01G176800 Glycine max HOM05D002706 ORTHO05D003253 4.4e-12 73.9 54 61.1
PRCOL_00003656 Prasinoderma coloniale HOM05D002706 ORTHO05D003253 4.4e-12 73.9 54 57.4
EL10Ac7g17308 Beta vulgaris HOM05D002706 ORTHO05D003253 5.8e-12 73.6 54 63.0
BcaB03g13934 Brassica carinata HOM05D002706 ORTHO05D003253 5.8e-12 73.6 54 63.0
Thhalv10016782m.g Eutrema salsugineum HOM05D002706 ORTHO05D003253 5.8e-12 73.6 54 59.3
Ah.14g085530 Amaranthus hybridus HOM05D002706 ORTHO05D003253 7.5e-12 73.2 54 61.1
CARHR127960 Cardamine hirsuta HOM05D002706 ORTHO05D003253 7.5e-12 73.2 54 59.3
AT1G28350 Arabidopsis thaliana HOM05D002706 ORTHO05D003253 9.8e-12 72.8 54 61.1
RcHm_v2.0_Chr2g0166361 Rosa chinensis HOM05D002706 ORTHO05D003253 9.8e-12 72.8 54 57.4
A07p11280 Brassica napus HOM05D002706 ORTHO05D003253 1.3e-11 72.4 55 61.8
BraA07t28919Z Brassica rapa HOM05D002706 ORTHO05D003253 1.3e-11 72.4 55 61.8
Cre03.g145727 Chlamydomonas reinhardtii HOM05D002706 ORTHO05D003253 1.3e-11 72.4 54 63.0
Zm00001eb416340 Zea mays HOM05D002706 ORTHO05D003253 1.3e-11 72.4 54 59.3
CDE02G3904 Ceratophyllum demersum HOM05D002706 ORTHO05D003253 1.7e-11 72.0 54 61.1
Os08g0150800 Oryza sativa ssp. japonica HOM05D002706 ORTHO05D003253 1.7e-11 72.0 54 57.4
Pp3c6_19930 Physcomitrium patens HOM05D002706 ORTHO05D003253 1.7e-11 72.0 54 59.3
BolC7t42205H Brassica oleracea HOM05D002706 ORTHO05D003253 2.9e-11 71.2 55 60.0
FAN08G2484 Fragaria x ananassa HOM05D002706 ORTHO05D003253 3.7e-11 70.9 55 56.4
CBR_g3647 Chara braunii HOM05D002706 ORTHO05D003253 4.9e-11 70.5 56 53.6
FvH4_5g02490 Fragaria vesca HOM05D002706 ORTHO05D003253 4.9e-11 70.5 54 57.4
Medtr1g007340 Medicago truncatula HOM05D002706 ORTHO05D003253 4.9e-11 70.5 54 55.6
TPR.G14339 Trifolium pratense HOM05D002706 ORTHO05D003253 4.9e-11 70.5 55 58.2
Carub.0004s1552 Capsella rubella HOM05D002706 ORTHO05D003253 6.4e-11 70.1 54 55.6
BcaC06g35356 Brassica carinata HOM05D002706 ORTHO05D003253 8.3e-11 69.7 54 59.3
C07p17030 Brassica napus HOM05D002706 ORTHO05D003253 8.3e-11 69.7 54 59.3
SEGI_02662 Sequoiadendron giganteum HOM05D002706 ORTHO05D003253 8.3e-11 69.7 54 59.3
Zm00001eb172860 Zea mays HOM05D002706 ORTHO05D003253 8.3e-11 69.7 54 57.4
AUR62019158 Chenopodium quinoa HOM05D002706 ORTHO05D003253 1.1e-10 69.3 54 57.4
AUR62043927 Chenopodium quinoa HOM05D002706 ORTHO05D003253 1.1e-10 69.3 54 57.4
Os08g0191800 Oryza sativa ssp. japonica HOM05D002706 ORTHO05D003253 1.4e-10 68.9 55 56.4
C03p75020 Brassica napus HOM05D002706 ORTHO05D003253 1.9e-10 68.6 53 56.6
BolC3t19754H Brassica oleracea HOM05D002706 ORTHO05D003253 1.9e-10 68.6 53 56.6
MBI01_g16593_MAGBIO Magnolia biondii HOM05D002706 ORTHO05D003253 1.9e-10 68.6 54 59.3
AUR62014422 Chenopodium quinoa HOM05D002706 ORTHO05D003253 3.2e-10 67.8 54 57.4
RcHm_v2.0_Chr7g0197611 Rosa chinensis HOM05D002706 ORTHO05D003253 3.2e-10 67.8 54 53.7
BcaC01g00037 Brassica carinata HOM05D002706 ORTHO05D003253 4.1e-10 67.4 53 56.6
A08p25670 Brassica napus HOM05D002706 ORTHO05D003253 4.1e-10 67.4 55 56.4
BraA08t34517Z Brassica rapa HOM05D002706 ORTHO05D003253 4.1e-10 67.4 55 56.4
RcHm_v2.0_Chr6g0275951 Rosa chinensis HOM05D002706 ORTHO05D003253 4.1e-10 67.4 54 53.7
MCO11G552 Micromonas commoda HOM05D002706 ORTHO05D003253 1.2e-09 65.9 54 51.9
Mapoly0023s0178 Marchantia polymorpha HOM05D002706 ORTHO05D003253 1.6e-09 65.5 54 55.6
RcHm_v2.0_Chr6g0257261 Rosa chinensis HOM05D002706 ORTHO05D003253 2.1e-09 65.1 54 51.9
TPR.G31392 Trifolium pratense HOM05D002706 ORTHO05D003253 2.1e-09 65.1 55 54.5
FAN14G0008 Fragaria x ananassa HOM05D002706 ORTHO05D003253 2.7e-09 64.7 54 53.7
TPR.G14321 Trifolium pratense HOM05D002706 ORTHO05D003253 2.7e-09 64.7 55 60.0
A08p11000 Brassica napus HOM05D002706 ORTHO05D003253 3.5e-09 64.3 55 54.5
FvH4_6g47330 Fragaria vesca HOM05D002706 ORTHO05D003253 4.6e-09 63.9 54 53.7
FAN02G2235 Fragaria x ananassa HOM05D002706 ORTHO05D003253 4.6e-09 63.9 54 53.7
FAN05G3038 Fragaria x ananassa HOM05D002706 ORTHO05D003253 4.6e-09 63.9 54 53.7
FAN09G2356 Fragaria x ananassa HOM05D002706 ORTHO05D003253 4.6e-09 63.9 54 53.7
Pp3c5_9890 Physcomitrium patens HOM05D002706 ORTHO05D003253 6.0e-09 63.5 54 53.7
RcHm_v2.0_Chr4g0446211 Rosa chinensis HOM05D002706 ORTHO05D003253 7.8e-09 63.2 57 54.4
BcaC01g00038 Brassica carinata HOM05D002706 ORTHO05D003253 3.0e-08 61.2 49 57.1
BolC3t19756H Brassica oleracea HOM05D002706 ORTHO05D003253 5.1e-08 60.5 56 53.6
SMO117G0292 Selaginella moellendorffii HOM05D002706 ORTHO05D003253 5.1e-08 60.5 55 45.5
Os02g0722001 Oryza sativa ssp. japonica HOM05D002706 ORTHO05D003253 7.3e-07 56.6 55 47.3
Ca_29898_v3 Cicer arietinum L. HOM05D002706 ORTHO05D003253 9.5e-07 56.2 38 68.4
vmacro17413 Vaccinium macrocarpon HOM05D002706 ORTHO05D003253 9.5e-07 56.2 40 65.0
FAN22G1249 Fragaria x ananassa HOM05D002706 ORTHO05D003253 2.8e-06 54.7 53 49.1
FAN07G2852 Fragaria x ananassa HOM05D002706 ORTHO05D003253 4.7e-06 53.9 53 49.1
Lalb_Chr06g0163611 Lupinus albus HOM05D002706 ORTHO05D003253 4.7e-06 53.9 34 70.6
SMO364G0051 Selaginella moellendorffii HOM05D002706 ORTHO05D003253 4.7e-06 53.9 56 41.1
Ciclev10005105m.g Citrus clementina HOM05D002706 ORTHO05D003253 8.1e-06 53.1 36 61.1


User provided reference genes

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