Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.4e-235 819.3 423 100.0
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 1.1e-120 437.6 466 56.2
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 3.5e-114 416.0 466 56.2
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 7.0e-107 391.7 464 52.2
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 1.8e-94 350.5 450 48.9
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 7.8e-90 335.1 459 47.1
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 4.7e-79 299.3 380 47.9
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 2.6e-77 293.5 467 42.4
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 6.4e-76 288.9 475 41.5
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 6.4e-76 288.9 491 39.9
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 8.3e-76 288.5 507 40.6
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 5.4e-75 285.8 456 43.4
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 7.0e-75 285.4 497 40.6
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 9.2e-75 285.0 459 41.8
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 3.5e-74 283.1 521 39.0
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 3.0e-73 280.0 468 41.7
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 3.0e-73 280.0 440 44.3
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 8.6e-73 278.5 476 40.3
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 1.1e-72 278.1 508 40.4
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 1.1e-72 278.1 462 42.4
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 1.9e-72 277.3 495 39.4
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 3.3e-72 276.6 481 40.3
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 4.3e-72 276.2 485 40.2
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 7.3e-72 275.4 356 46.3
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 9.5e-72 275.0 512 39.6
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.6e-71 274.2 483 39.5
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 2.1e-71 273.9 428 43.7
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 2.8e-71 273.5 496 38.9
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.1e-70 271.6 501 39.3
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 1.8e-70 270.8 487 39.6
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 1.8e-70 270.8 427 42.6
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 2.3e-70 270.4 476 40.1
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 2.3e-70 270.4 485 40.6
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 2.3e-70 270.4 495 40.2
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 4.0e-70 269.6 474 40.9
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 5.2e-70 269.2 505 38.0
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.2e-70 269.2 509 39.3
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 8.9e-70 268.5 518 37.6
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 8.9e-70 268.5 521 39.2
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 8.9e-70 268.5 423 43.5
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 1.5e-69 267.7 386 45.3
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 2.6e-69 266.9 435 41.4
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 2.6e-69 266.9 461 40.1
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.3e-68 264.6 469 41.2
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.7e-68 264.2 526 38.2
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 1.7e-68 264.2 512 38.9
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 2.2e-68 263.8 524 37.6
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 2.2e-68 263.8 490 38.6
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 2.2e-68 263.8 489 38.0
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 4.9e-68 262.7 475 39.6
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 4.9e-68 262.7 409 44.3
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 8.3e-68 261.9 502 38.4
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 1.4e-67 261.2 516 39.0
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 3.2e-67 260.0 453 40.2
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.4e-67 259.2 465 41.3
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 7.1e-67 258.8 489 38.9
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 1.2e-66 258.1 386 44.0
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.7e-66 256.9 475 38.9
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 2.7e-66 256.9 452 39.8
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 4.6e-66 256.1 503 38.4
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 6.0e-66 255.8 372 43.0
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 7.8e-66 255.4 503 38.8
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.3e-65 254.6 478 38.9
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 1.7e-65 254.2 477 39.6
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.7e-65 254.2 527 36.6
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.3e-65 253.8 480 38.1
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 6.6e-65 252.3 438 40.4
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 8.6e-65 251.9 464 39.0
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 1.9e-64 250.8 436 38.3
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.9e-64 250.8 430 42.1
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 3.3e-64 250.0 461 40.6
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 3.3e-64 250.0 441 40.1
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 4.3e-64 249.6 451 39.0
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 4.3e-64 249.6 451 39.0
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 4.3e-64 249.6 451 39.0
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 4.3e-64 249.6 469 38.6
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 4.3e-64 249.6 463 38.2
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 7.3e-64 248.8 400 43.0
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 7.3e-64 248.8 400 43.0
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 7.3e-64 248.8 400 43.0
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 9.5e-64 248.4 415 40.5
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.6e-63 247.7 338 43.2
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 2.1e-63 247.3 436 40.1
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 2.8e-63 246.9 548 37.0
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 3.6e-63 246.5 396 40.9
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.7e-63 246.1 485 39.0
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 2.4e-62 243.8 481 38.0
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 4.0e-62 243.0 540 36.1
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 6.8e-62 242.3 387 40.8
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 5.8e-61 239.2 446 39.2
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 2.9e-60 236.9 360 42.8
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.9e-60 236.9 423 37.6
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 3.8e-60 236.5 445 40.2
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 8.4e-60 235.3 347 43.2
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 1.4e-59 234.6 462 40.7
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.4e-59 234.6 358 40.8
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 1.9e-59 234.2 456 39.0
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 1.9e-59 234.2 456 39.0
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.9e-59 234.2 301 48.8
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 1.9e-59 234.2 489 38.0
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 4.2e-59 233.0 362 42.0
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 4.2e-59 233.0 361 42.4
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 7.1e-59 232.3 445 37.5
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 7.1e-59 232.3 490 37.8
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 7.1e-59 232.3 329 44.1
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.2e-58 231.5 356 41.3
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 2.1e-58 230.7 463 40.2
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 2.1e-58 230.7 391 40.2
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 4.6e-58 229.6 377 39.5
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 7.8e-58 228.8 361 41.0
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 1.3e-57 228.0 381 40.9
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 1.3e-57 228.0 363 40.8
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 1.1e-56 224.9 360 40.6
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.5e-56 224.6 349 41.5
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 2.8e-55 220.3 455 37.1
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 2.8e-55 220.3 350 39.4
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 3.1e-54 216.9 470 36.2
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 5.3e-54 216.1 322 42.5
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 9.0e-54 215.3 487 36.1
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 1.2e-53 214.9 477 36.1
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 1.5e-53 214.5 474 35.7
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 2.6e-53 213.8 305 42.3
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 3.4e-53 213.4 455 37.8
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.9e-52 209.5 380 36.8
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 1.4e-51 208.0 525 33.0
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 1.9e-51 207.6 323 40.6
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 2.4e-51 207.2 396 37.6
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.9e-49 199.9 264 48.5
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 5.1e-49 199.5 361 37.1
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 1.3e-47 194.9 430 33.3
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.6e-47 194.5 380 36.8
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 4.8e-47 193.0 381 36.2
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 1.2e-45 188.3 316 39.2
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 5.8e-45 186.0 288 40.3
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 3.2e-43 180.3 504 32.9
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.2e-42 178.3 286 40.9
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 2.3e-41 174.1 415 33.0
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 9.0e-38 162.2 209 46.9
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 4.6e-34 149.8 164 53.0
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.9e-33 146.7 169 51.5
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.1e-30 138.7 543 26.5
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.1e-30 138.7 543 26.5
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 4.5e-29 133.3 454 28.2
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 8.2e-23 112.5 216 33.8
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.8e-22 111.3 223 30.5
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.1e-22 110.5 354 25.7
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 9.0e-22 109.0 308 26.9
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.2e-21 108.6 221 33.0
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.2e-21 108.6 340 27.9
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.1e-19 102.1 216 30.6
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 4.6e-18 96.7 255 27.8
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.5e-16 91.7 329 27.7
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 2.5e-16 90.9 328 24.1
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.7e-15 88.2 210 29.0
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.1e-14 84.0 172 39.5
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.0e-13 81.3 122 40.2
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 3.4e-13 80.5 121 38.0
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 2.1e-10 71.2 172 33.7
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 1.5e-08 65.1 52 63.5
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 1.8e-06 58.2 87 36.8


User provided reference genes

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