Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 1.8e-41 172.2 86 100.0
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 1.9e-27 125.6 90 70.0
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 1.9e-27 125.6 90 70.0
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 8.8e-17 90.1 69 62.3
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.3e-15 84.0 91 44.0
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.4e-14 82.8 50 64.0
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.4e-14 82.8 50 64.0
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 3.1e-14 81.6 53 60.4
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.1e-14 81.6 91 42.9
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 3.1e-14 81.6 91 42.9
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 4.1e-14 81.3 90 45.6
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 5.4e-14 80.9 47 70.2
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 5.4e-14 80.9 47 70.2
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 5.4e-14 80.9 93 48.4
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 5.4e-14 80.9 49 63.3
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 1.2e-13 79.7 49 65.3
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.6e-13 79.3 93 45.2
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 1.6e-13 79.3 95 45.3
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 2.7e-13 78.6 52 55.8
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 3.5e-13 78.2 77 48.1
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 3.5e-13 78.2 73 47.9
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-13 78.2 92 41.3
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 3.5e-13 78.2 93 46.2
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 4.5e-13 77.8 96 39.6
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 4.5e-13 77.8 51 60.8
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 4.5e-13 77.8 92 42.4
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 4.5e-13 77.8 53 54.7
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 4.5e-13 77.8 52 59.6
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 5.9e-13 77.4 79 45.6
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 5.9e-13 77.4 89 43.8
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 7.7e-13 77.0 68 51.5
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 7.7e-13 77.0 91 48.4
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 7.7e-13 77.0 96 43.8
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-12 76.6 49 63.3
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 1.0e-12 76.6 92 45.7
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.0e-12 76.6 91 46.2
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.3e-12 76.3 86 41.9
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.3e-12 76.3 50 56.0
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 1.3e-12 76.3 91 46.2
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-12 76.3 90 47.8
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.7e-12 75.9 93 41.9
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 1.7e-12 75.9 49 61.2
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.3e-12 75.5 86 44.2
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 2.3e-12 75.5 55 54.5
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 2.3e-12 75.5 86 47.7
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 2.3e-12 75.5 92 42.4
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.9e-12 75.1 94 39.4
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 2.9e-12 75.1 85 43.5
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 2.9e-12 75.1 85 43.5
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.9e-12 75.1 79 48.1
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.9e-12 75.1 94 41.5
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 3.8e-12 74.7 62 53.2
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 3.8e-12 74.7 78 48.7
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 5.0e-12 74.3 52 55.8
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 6.6e-12 73.9 51 56.9
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.6e-12 73.9 95 38.9
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 6.6e-12 73.9 93 44.1
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 6.6e-12 73.9 73 47.9
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 8.6e-12 73.6 55 52.7
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.6e-12 73.6 49 61.2
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.1e-11 73.2 91 40.7
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.1e-11 73.2 92 37.0
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.9e-11 72.4 49 53.1
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.9e-11 72.4 88 38.6
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.9e-11 72.4 94 41.5
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 2.5e-11 72.0 77 44.2
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 2.5e-11 72.0 92 41.3
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 3.3e-11 71.6 47 61.7
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.3e-11 71.6 49 55.1
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 3.3e-11 71.6 92 41.3
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.3e-11 71.6 91 39.6
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.3e-11 71.6 74 44.6
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 3.3e-11 71.6 90 41.1
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.2e-11 71.2 104 37.5
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 4.2e-11 71.2 97 36.1
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 4.2e-11 71.2 88 37.5
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.2e-11 71.2 74 43.2
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.5e-11 70.9 97 36.1
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 5.5e-11 70.9 97 36.1
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 5.5e-11 70.9 52 48.1
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 7.2e-11 70.5 94 36.2
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 7.2e-11 70.5 94 36.2
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 7.2e-11 70.5 50 54.0
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 9.5e-11 70.1 94 36.2
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.2e-10 69.7 53 50.9
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.2e-10 69.7 84 42.9
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 1.6e-10 69.3 95 42.1
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 1.6e-10 69.3 92 37.0
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 2.1e-10 68.9 56 48.2
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.1e-10 68.9 76 42.1
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 2.8e-10 68.6 84 41.7
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 2.8e-10 68.6 49 55.1
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.6e-10 68.2 84 40.5
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 3.6e-10 68.2 49 53.1
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 3.6e-10 68.2 90 36.7
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 3.6e-10 68.2 87 33.3
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 3.6e-10 68.2 84 35.7
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.6e-10 68.2 78 34.6
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 3.6e-10 68.2 81 42.0
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 4.7e-10 67.8 51 51.0
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 6.1e-10 67.4 51 56.9
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 6.1e-10 67.4 94 39.4
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 8.0e-10 67.0 76 36.8
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 8.0e-10 67.0 84 33.3
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 8.0e-10 67.0 50 52.0
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 8.0e-10 67.0 50 50.0
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 8.0e-10 67.0 50 50.0
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.0e-10 67.0 90 37.8
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 1.0e-09 66.6 50 52.0
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 1.0e-09 66.6 50 50.0
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 1.0e-09 66.6 50 50.0
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.0e-09 66.6 78 43.6
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.4e-09 66.2 93 36.6
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 1.4e-09 66.2 50 50.0
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.4e-09 66.2 50 52.0
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 1.4e-09 66.2 50 50.0
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 1.4e-09 66.2 50 50.0
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 1.4e-09 66.2 50 50.0
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.4e-09 66.2 90 36.7
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.8e-09 65.9 50 52.0
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 2.3e-09 65.5 84 34.5
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.0e-09 65.1 51 51.0
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 3.0e-09 65.1 53 49.1
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 4.0e-09 64.7 80 41.2
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.2e-09 64.3 45 62.2
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.2e-09 64.3 51 51.0
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 5.2e-09 64.3 86 40.7
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 6.8e-09 63.9 88 40.9
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 6.8e-09 63.9 79 40.5
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 6.8e-09 63.9 52 51.9
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 6.8e-09 63.9 52 51.9
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.9e-09 63.5 42 52.4
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-08 63.2 86 37.2
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-08 63.2 86 37.2
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 1.2e-08 63.2 85 38.8
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.0e-08 62.4 92 35.9
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.6e-08 62.0 92 37.0
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 2.6e-08 62.0 84 33.3
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.6e-08 62.0 51 49.0
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 2.6e-08 62.0 84 38.1
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 3.4e-08 61.6 51 52.9
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.4e-08 61.6 84 38.1
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 4.4e-08 61.2 58 39.7
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 4.4e-08 61.2 92 37.0
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.4e-08 61.2 92 37.0
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 5.7e-08 60.8 84 34.5
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 7.5e-08 60.5 85 35.3
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 7.5e-08 60.5 75 41.3
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 9.8e-08 60.1 75 40.0
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 9.8e-08 60.1 85 36.5
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 1.3e-07 59.7 43 51.2
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 1.3e-07 59.7 46 50.0
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 1.3e-07 59.7 84 35.7
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 1.3e-07 59.7 93 40.9
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 1.3e-07 59.7 49 42.9
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.7e-07 59.3 52 53.8
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 1.7e-07 59.3 62 45.2
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.2e-07 58.9 89 37.1
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 2.2e-07 58.9 50 50.0
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.7e-07 58.2 93 34.4
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.9e-07 57.8 77 40.3
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 4.9e-07 57.8 93 36.6
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 6.3e-07 57.4 77 40.3
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.3e-07 57.4 77 40.3
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.3e-07 57.4 47 53.2
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.3e-07 57.4 90 34.4
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.3e-07 57.0 51 41.2
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 1.1e-06 56.6 81 33.3
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 1.4e-06 56.2 47 44.7
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.8e-06 55.8 75 36.0
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 1.8e-06 55.8 89 38.2
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 3.1e-06 55.1 67 32.8
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.1e-06 54.7 85 34.1
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 5.4e-06 54.3 84 35.7
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.4e-06 54.3 89 38.2


User provided reference genes

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