Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 8.2e-182 640.2 307 100.0
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 4.6e-108 395.2 259 72.6
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 3.9e-107 392.1 246 72.0
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 4.7e-105 385.2 280 65.0
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 1.5e-103 380.2 277 65.3
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 2.1e-100 369.8 275 64.0
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 2.3e-99 366.3 329 56.2
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 3.0e-99 365.9 250 68.4
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 6.6e-99 364.8 274 60.9
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 8.7e-99 364.4 285 63.5
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 2.5e-98 362.8 248 69.0
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 2.5e-98 362.8 270 63.3
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 4.3e-98 362.1 274 64.2
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 4.8e-97 358.6 273 60.8
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 8.1e-97 357.8 278 59.4
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.1e-96 357.5 278 61.2
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.1e-96 357.5 278 59.7
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 1.4e-96 357.1 284 59.5
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 1.4e-96 357.1 248 67.3
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 2.4e-96 356.3 277 61.7
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 5.3e-96 355.1 277 62.1
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 5.3e-96 355.1 277 62.5
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.5e-95 353.6 287 59.6
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.5e-95 353.6 248 66.1
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 2.0e-95 353.2 246 67.5
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 5.8e-95 351.7 277 59.9
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 5.8e-95 351.7 250 63.6
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 7.6e-95 351.3 306 55.6
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 9.9e-95 350.9 284 60.9
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 9.9e-95 350.9 311 56.9
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 9.9e-95 350.9 311 56.9
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 9.9e-95 350.9 305 55.1
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.3e-94 350.5 305 57.7
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.3e-94 350.5 279 61.3
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 1.7e-94 350.1 311 55.9
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 2.2e-94 349.7 248 66.1
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 3.8e-94 349.0 277 61.4
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 3.8e-94 349.0 249 64.7
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 6.4e-94 348.2 276 60.5
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 6.4e-94 348.2 282 58.5
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 6.4e-94 348.2 288 57.3
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 6.4e-94 348.2 305 56.1
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.1e-93 347.4 248 66.1
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 1.9e-93 346.7 276 61.2
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 3.2e-93 345.9 303 55.1
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.2e-93 345.5 273 60.8
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 5.4e-93 345.1 248 64.9
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.4e-93 345.1 283 58.0
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 5.4e-93 345.1 248 64.5
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 7.1e-93 344.7 277 59.6
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 7.1e-93 344.7 274 61.7
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.2e-92 344.0 276 60.1
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 1.6e-92 343.6 272 60.3
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 2.1e-92 343.2 242 66.1
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 3.5e-92 342.4 232 66.8
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 7.9e-92 341.3 256 62.9
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 1.0e-91 340.9 301 54.5
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 1.0e-91 340.9 250 63.2
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.3e-91 340.5 325 53.5
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.7e-91 340.1 325 53.2
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 3.0e-91 339.3 250 62.4
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 3.0e-91 339.3 271 60.1
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 3.9e-91 339.0 248 62.5
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 5.1e-91 338.6 271 59.8
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 8.7e-91 337.8 280 57.5
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 8.7e-91 337.8 274 58.4
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.1e-90 337.4 270 57.8
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 1.5e-90 337.0 246 65.0
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 2.5e-90 336.3 270 57.4
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 2.5e-90 336.3 284 57.7
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 4.3e-90 335.5 283 59.4
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 9.6e-90 334.3 282 58.2
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 1.3e-89 334.0 274 60.2
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.3e-89 334.0 274 59.1
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 1.6e-89 333.6 269 59.1
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 2.1e-89 333.2 273 59.3
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 2.1e-89 333.2 273 57.1
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 2.8e-89 332.8 310 53.2
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 2.8e-89 332.8 330 51.5
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 3.6e-89 332.4 275 58.2
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 3.6e-89 332.4 275 59.6
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 6.2e-89 331.6 284 58.1
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 8.1e-89 331.3 273 59.7
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 8.1e-89 331.3 276 56.5
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 1.1e-88 330.9 274 58.8
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.8e-88 330.1 297 53.5
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 9.0e-88 327.8 247 63.2
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 9.0e-88 327.8 275 60.0
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 1.5e-87 327.0 281 57.7
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 2.0e-87 326.6 270 55.6
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 9.9e-87 324.3 274 58.0
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 1.7e-86 323.6 230 64.8
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 1.7e-86 323.6 287 56.4
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 8.4e-86 321.2 248 58.1
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 1.9e-85 320.1 280 56.1
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 2.4e-85 319.7 248 60.9
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 3.2e-85 319.3 270 59.6
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 9.3e-85 317.8 240 62.9
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 9.3e-85 317.8 306 51.3
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 4.6e-84 315.5 246 61.8
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 1.3e-83 313.9 257 58.4
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 1.8e-83 313.5 295 53.9
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 1.8e-83 313.5 295 53.9
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.7e-81 305.8 258 58.9
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 6.2e-81 305.1 286 53.1
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 8.1e-81 304.7 247 58.7
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.1e-80 304.3 285 53.7
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 4.0e-80 302.4 223 63.2
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 2.0e-79 300.1 245 60.8
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 2.9e-78 296.2 283 54.4
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 2.9e-78 296.2 258 55.8
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 3.8e-78 295.8 207 66.7
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 2.5e-77 293.1 225 59.1
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 1.9e-74 283.5 357 44.3
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 1.7e-70 270.4 306 45.1
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 8.5e-70 268.1 228 58.3
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 4.2e-69 265.8 234 52.1
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 5.5e-69 265.4 215 58.1
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.2e-68 264.2 235 54.9
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.6e-65 253.8 235 51.1
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.4e-63 246.1 211 55.9
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 3.4e-63 246.1 195 60.5
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 6.7e-59 231.9 233 46.8
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 6.7e-59 231.9 233 46.8
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 2.6e-58 229.9 166 62.7
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 1.7e-57 227.3 233 46.4
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.8e-57 226.5 210 52.9
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 1.5e-55 220.7 212 53.8
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 7.2e-53 211.8 193 53.9
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.7e-52 209.1 138 64.5
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 4.4e-50 202.6 156 60.3
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 8.2e-49 198.4 260 36.9
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 9.1e-48 194.9 161 60.2
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 1.7e-46 190.7 158 59.5
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.8e-46 189.5 210 48.1
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 4.7e-44 182.6 250 37.2
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.0e-43 181.4 191 47.6
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 4.5e-39 166.0 116 65.5
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 1.9e-37 160.6 284 36.3
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 3.2e-37 159.8 131 58.0
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 3.2e-37 159.8 187 47.6
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.4e-32 144.4 283 35.3
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 3.1e-32 143.3 126 57.9
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.7e-30 137.5 104 59.6
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 2.3e-27 127.1 147 47.6
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 9.5e-21 105.1 133 44.4
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 5.7e-18 95.9 73 60.3
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.3e-17 94.7 76 53.9
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 1.8e-16 90.9 106 41.5
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 3.2e-16 90.1 72 52.8
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 2.0e-15 87.4 76 55.3
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 7.8e-15 85.5 119 44.5
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 2.6e-10 70.5 47 74.5
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 1.3e-09 68.2 36 80.6
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 7.8e-07 58.9 51 54.9


User provided reference genes

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