Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 1.4e-229 799.3 402 100.0
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 2.2e-195 685.6 410 85.4
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.5e-183 645.6 404 82.2
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 2.3e-152 542.7 409 69.4
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.5e-151 540.0 421 70.5
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 2.8e-150 535.8 404 69.6
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.4e-149 533.5 408 68.6
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 2.7e-148 529.3 399 70.9
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 1.0e-147 527.3 412 68.4
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.7e-147 526.6 411 68.9
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 1.9e-146 523.1 401 69.1
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 1.2e-145 520.4 403 69.0
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 2.1e-145 519.6 414 66.2
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 6.1e-145 518.1 376 70.2
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 6.1e-145 518.1 411 66.7
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 8.0e-145 517.7 403 67.0
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.8e-144 516.5 416 64.2
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 1.8e-144 516.5 432 64.4
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 3.0e-144 515.8 419 66.6
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 4.0e-144 515.4 413 65.4
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 5.2e-144 515.0 410 66.8
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 4.4e-143 511.9 432 63.9
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.3e-142 510.4 375 71.2
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 1.3e-142 510.4 369 70.7
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 2.4e-141 506.1 391 67.8
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 2.4e-141 506.1 361 71.2
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 4.1e-141 505.4 396 67.4
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 5.4e-141 505.0 402 65.9
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 7.0e-141 504.6 367 69.8
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 9.2e-141 504.2 396 67.4
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 2.0e-140 503.1 419 64.0
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 2.7e-140 502.7 366 70.2
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 5.9e-140 501.5 408 65.9
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 5.0e-139 498.4 361 72.3
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 5.0e-139 498.4 391 68.8
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 6.6e-139 498.0 416 64.7
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 1.5e-138 496.9 423 63.1
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.5e-138 496.9 440 61.8
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 1.5e-138 496.9 366 69.7
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.9e-138 496.5 396 66.4
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 3.6e-137 492.3 422 63.5
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 3.6e-137 492.3 406 65.3
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 6.2e-137 491.5 385 64.9
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 1.4e-136 490.3 433 61.4
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 1.8e-136 490.0 357 69.2
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 1.8e-136 490.0 287 81.5
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 2.3e-136 489.6 387 66.1
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 6.8e-136 488.0 385 64.7
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 6.8e-136 488.0 414 61.8
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.2e-135 487.3 406 64.5
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 1.5e-135 486.9 415 62.7
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 1.5e-135 486.9 387 65.9
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 2.6e-135 486.1 380 66.8
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 5.8e-135 485.0 417 63.1
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.7e-134 483.4 406 63.3
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 4.9e-134 481.9 363 68.0
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 8.3e-134 481.1 287 80.8
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 2.4e-133 479.6 372 66.9
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 4.1e-133 478.8 396 65.2
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 3.5e-132 475.7 385 66.0
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 4.6e-132 475.3 379 64.9
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 7.8e-132 474.6 358 67.0
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 2.3e-131 473.0 385 63.1
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 3.0e-131 472.6 359 67.1
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 3.9e-131 472.2 378 63.5
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 5.0e-131 471.9 358 65.9
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 6.6e-131 471.5 403 63.8
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 1.1e-130 470.7 355 67.0
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.5e-130 469.5 377 66.0
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 3.3e-130 469.2 357 65.0
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 7.3e-130 468.0 287 78.7
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 9.5e-130 467.6 410 61.7
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 9.5e-130 467.6 366 67.2
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.6e-129 466.8 438 60.3
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 2.8e-129 466.1 357 65.8
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 3.6e-129 465.7 400 63.8
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.4e-128 463.8 364 64.0
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 2.3e-128 463.0 417 60.7
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 5.2e-128 461.8 378 62.7
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 5.2e-128 461.8 378 62.7
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 6.8e-128 461.5 357 64.1
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 2.2e-126 456.4 406 60.3
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 1.9e-125 453.4 417 59.7
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 2.4e-125 453.0 406 61.3
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 4.1e-125 452.2 391 61.6
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 6.0e-124 448.4 423 58.4
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 7.8e-124 448.0 402 59.7
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 1.3e-123 447.2 366 63.7
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 3.9e-123 445.7 391 61.4
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.5e-122 443.7 401 58.6
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 3.3e-122 442.6 416 56.7
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 5.2e-120 435.3 403 59.1
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 6.8e-120 434.9 401 59.4
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.5e-119 433.7 394 58.6
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.0e-119 433.3 407 57.5
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 2.0e-119 433.3 403 60.3
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 3.4e-119 432.6 398 58.8
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 2.2e-118 429.9 400 58.2
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 4.9e-118 428.7 398 57.5
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 2.4e-117 426.4 399 58.4
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 3.2e-117 426.0 405 58.3
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 7.1e-117 424.9 400 59.0
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 7.1e-117 424.9 402 58.2
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 7.1e-117 424.9 411 56.7
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 7.1e-117 424.9 387 60.7
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 9.2e-117 424.5 411 56.7
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 1.3e-115 420.6 411 56.4
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.7e-115 420.2 494 50.4
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 5.6e-114 415.2 363 57.0
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 3.6e-113 412.5 287 71.1
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.4e-112 409.8 369 60.7
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 4.0e-112 409.1 364 58.2
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 1.2e-111 407.5 335 60.9
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 1.3e-110 404.1 377 57.3
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.3e-110 404.1 390 57.4
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 8.4e-110 401.4 290 63.8
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 2.4e-109 399.8 393 58.5
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 4.2e-109 399.1 393 56.0
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 4.2e-109 399.1 354 59.6
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 7.1e-109 398.3 391 57.8
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 9.3e-109 397.9 370 60.0
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 4.6e-108 395.6 393 55.5
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.3e-107 394.0 393 56.7
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 1.3e-107 394.0 359 58.8
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.7e-107 393.7 287 70.4
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 2.3e-107 393.3 393 55.2
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 1.9e-106 390.2 343 59.8
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 8.1e-105 384.8 383 57.4
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 8.1e-105 384.8 383 57.4
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 4.0e-104 382.5 380 56.3
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 4.0e-104 382.5 380 56.3
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 5.3e-104 382.1 358 58.1
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.5e-103 380.6 383 56.9
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.1e-101 374.4 328 64.6
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 4.3e-98 362.5 369 53.9
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 3.6e-97 359.4 358 55.6
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 1.2e-95 354.4 425 48.7
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 4.9e-86 322.4 251 64.9
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.1e-77 294.7 192 76.0
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 1.3e-57 228.0 321 38.9
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 2.2e-54 217.2 171 63.7
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 3.6e-52 209.9 160 65.0
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 1.3e-49 201.4 403 32.8
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 2.5e-45 187.2 258 43.0
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 1.9e-37 161.0 248 42.3
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 1.5e-29 134.8 189 42.3
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 4.0e-27 126.7 111 64.0
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 1.0e-22 112.1 72 72.2
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 1.8e-19 101.3 173 38.2
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.5e-18 98.2 278 28.1
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 3.7e-17 93.6 144 46.5
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 5.4e-16 89.7 53 79.2
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 3.3e-13 80.5 96 53.1


User provided reference genes

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