Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 0.0e+00 2428.7 1402 100.0
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 0.0e+00 1579.3 1389 71.2
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1291.2 1543 51.3
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1233.8 1446 53.4
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1209.1 1456 49.9
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1203.0 1448 50.1
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1193.7 1542 54.5
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1189.1 1512 47.1
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1179.1 1499 51.0
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1170.2 1460 50.1
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1148.7 1458 54.4
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1146.3 1431 49.9
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1144.0 1429 48.7
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1134.0 1535 46.9
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1131.7 1451 51.1
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1128.2 1444 48.7
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1124.8 1515 45.5
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1120.1 1446 49.9
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1116.3 1464 47.9
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1115.1 1435 51.4
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1113.6 1485 47.2
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 0.0e+00 1112.1 783 74.2
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1104.4 1448 48.6
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1104.0 1519 47.3
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1099.7 1457 47.2
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1097.0 1508 49.7
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 0.0e+00 1092.0 1520 52.0
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 0.0e+00 1082.8 1435 49.6
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 2.5e-310 1069.3 1556 46.1
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 3.3e-310 1068.9 1521 48.9
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 1.2e-309 1067.0 1466 45.5
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 4.7e-309 1065.1 1455 45.1
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 5.2e-308 1061.6 1428 45.9
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 7.5e-307 1057.7 1421 47.0
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 2.2e-306 1056.2 1522 45.7
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 3.7e-306 1055.4 1466 45.2
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 8.3e-306 1054.3 1443 50.1
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 1.4e-305 1053.5 1579 45.3
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 5.4e-305 1051.6 1452 45.0
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 2.0e-304 1049.7 1425 45.1
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 5.9e-304 1048.1 1506 46.1
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 8.6e-303 1044.3 1451 44.9
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 1.1e-302 1043.9 1443 49.5
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 7.3e-302 1041.2 1563 44.5
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 1.6e-301 1040.0 1475 44.1
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 2.8e-301 1039.3 1474 47.1
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 3.4e-299 1032.3 1505 46.5
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 4.9e-298 1028.5 1429 45.4
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 4.1e-297 1025.4 1442 44.2
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 2.0e-296 1023.1 1435 46.6
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 6.0e-296 1021.5 1551 42.1
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 7.8e-296 1021.1 1466 51.6
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 1.0e-295 1020.8 1498 45.9
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 6.6e-295 1018.1 1431 46.6
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 8.6e-295 1017.7 1427 46.5
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 1.9e-294 1016.5 1490 46.4
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 3.3e-294 1015.8 1464 44.6
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 4.3e-294 1015.4 1435 44.2
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 3.1e-292 1009.2 1465 43.4
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 2.0e-291 1006.5 1432 47.6
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 9.8e-291 1004.2 1470 44.5
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 3.7e-290 1002.3 1418 49.9
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 6.4e-290 1001.5 1492 44.2
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 2.4e-289 999.6 1414 51.0
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 9.2e-289 997.7 1415 44.9
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 3.5e-288 995.7 1455 43.4
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 6.0e-288 995.0 1495 45.1
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 3.9e-287 992.3 1452 45.7
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 5.1e-287 991.9 1587 43.7
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 1.2e-285 987.3 1434 48.0
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 4.4e-275 952.2 1425 46.1
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 1.3e-274 950.7 1572 43.1
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 2.4e-273 946.4 1418 44.9
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 5.4e-273 945.3 1427 45.8
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 7.1e-273 944.9 1558 41.2
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 7.1e-273 944.9 1445 44.3
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 7.8e-272 941.4 978 54.5
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 6.6e-271 938.3 1825 37.3
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.9e-270 936.8 919 57.7
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 3.2e-265 919.5 1409 41.8
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 5.8e-259 898.7 901 55.5
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 2.6e-251 873.2 1557 41.4
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 1.7e-250 870.5 1516 41.1
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 9.3e-249 864.8 1445 47.0
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.3e-246 855.9 970 50.9
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.8e-244 850.5 1552 44.9
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 5.1e-239 832.4 1269 44.0
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 1.0e-234 818.1 1472 40.7
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.1e-233 814.7 757 59.0
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 4.2e-225 786.2 1300 43.4
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 7.0e-212 742.3 1438 38.6
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.7e-202 711.1 1365 42.9
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 1.2e-195 688.3 1408 34.5
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 9.8e-190 668.7 1210 38.4
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 4.6e-187 659.8 2367 29.1
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 6.0e-163 579.7 1500 31.1
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 1.6e-160 571.6 549 57.6
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.4e-159 568.5 702 46.3
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 8.7e-146 522.7 862 38.2
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 5.3e-143 513.5 1405 32.0
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 9.0e-143 512.7 981 38.0
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.4e-122 445.7 1180 35.4
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 4.3e-121 440.7 439 57.2
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 5.0e-117 427.2 346 67.3
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.2e-104 385.2 563 44.6
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.1e-103 381.3 1336 26.9
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 3.6e-99 367.9 1432 27.9
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 6.1e-99 367.1 1546 31.0
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.0e-98 364.8 465 42.8
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 1.1e-95 356.3 498 42.0
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 5.3e-95 354.0 350 54.3
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 3.6e-91 341.3 277 60.6
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 1.7e-85 322.4 1263 28.2
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.4e-82 312.8 359 49.6
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 7.0e-79 300.4 290 50.7
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 1.4e-74 286.2 289 50.5
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.5e-68 266.2 237 58.6
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 5.6e-68 264.2 224 61.2
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.2e-57 229.9 820 27.7
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.6e-51 208.4 156 68.6
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 4.4e-49 201.4 271 43.2
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.8e-43 182.2 262 38.5
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 5.3e-42 177.9 215 47.0
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.4e-39 169.9 152 58.6
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-35 156.0 720 25.0
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 4.0e-34 151.8 127 59.8
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 6.9e-34 151.0 75 94.7
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 4.6e-30 138.3 408 27.0
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.8e-29 136.3 213 38.0
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 3.1e-26 125.6 156 43.6
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 8.4e-24 117.5 99 61.6
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.4e-23 116.7 722 22.7
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 2.5e-20 105.9 100 54.0
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 5.3e-18 98.2 213 31.5
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 1.2e-17 97.1 181 37.6
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 1.9e-15 89.7 239 29.7
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 6.3e-11 74.7 64 70.3
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 4.1e-10 72.0 343 24.5
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 5.0e-08 65.1 81 40.7
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 9.4e-07 60.8 77 48.1
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 9.4e-07 60.8 51 54.9


User provided reference genes

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