Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 0.0e+00 1301.2 775 100.0
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 1.1e-278 963.4 795 73.5
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 2.2e-266 922.5 788 76.0
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 5.4e-204 715.3 791 63.3
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 3.1e-191 672.9 812 60.1
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 4.3e-185 652.5 797 60.1
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 2.8e-184 649.8 793 59.5
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 1.3e-181 641.0 791 59.2
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 5.6e-177 625.5 803 57.7
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 2.1e-176 623.6 796 57.3
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 3.6e-176 622.9 799 57.7
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.8e-175 620.5 773 58.5
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 5.3e-175 619.0 795 57.2
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 2.0e-174 617.1 773 58.2
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 2.0e-174 617.1 776 58.2
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 1.7e-173 614.0 787 56.8
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 4.9e-173 612.5 773 58.2
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 2.4e-172 610.1 825 56.4
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 1.2e-171 607.8 804 58.0
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 7.9e-171 605.1 803 55.8
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 7.9e-171 605.1 807 57.6
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 1.3e-170 604.4 790 56.3
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 3.3e-169 599.7 804 55.6
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 5.6e-169 599.0 787 55.8
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 1.3e-168 597.8 804 55.5
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 6.2e-168 595.5 784 56.1
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 4.0e-167 592.8 802 55.5
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 1.2e-166 591.3 803 50.1
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 1.5e-166 590.9 799 50.8
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 2.0e-166 590.5 800 55.5
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 7.6e-166 588.6 800 55.1
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 1.7e-165 587.4 801 49.8
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 3.8e-165 586.3 809 55.6
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 4.9e-165 585.9 778 56.3
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 6.4e-165 585.5 810 56.4
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 5.5e-164 582.4 791 54.9
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 7.1e-164 582.0 790 54.4
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 7.1e-164 582.0 790 54.4
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 7.1e-164 582.0 799 54.7
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 1.2e-163 581.3 785 56.2
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 2.7e-163 580.1 789 54.2
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 2.7e-163 580.1 789 54.2
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 1.5e-161 574.3 800 54.1
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 1.9e-161 573.9 721 58.0
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 3.3e-161 573.2 795 48.6
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 9.6e-161 571.6 774 56.3
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 1.3e-160 571.2 800 54.1
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 2.1e-160 570.5 806 53.1
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 2.8e-160 570.1 790 53.5
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 1.5e-158 564.3 791 53.0
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 2.0e-158 563.9 692 61.4
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 5.8e-158 562.4 803 54.0
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 9.3e-156 555.1 764 55.2
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 1.6e-155 554.3 789 52.3
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 2.1e-155 553.9 789 53.2
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 2.7e-155 553.5 684 60.2
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 1.5e-153 547.7 823 45.9
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 1.9e-153 547.4 794 52.9
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 8.2e-152 542.0 796 53.3
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 1.8e-151 540.8 799 52.1
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 4.1e-151 539.7 785 53.8
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 1.2e-150 538.1 779 54.0
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 2.0e-150 537.3 778 46.1
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 2.0e-150 537.3 810 48.3
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 3.4e-150 536.6 780 45.9
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 3.4e-150 536.6 797 52.4
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 5.9e-150 535.8 808 53.7
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 7.7e-150 535.4 800 53.1
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 1.3e-149 534.6 808 53.5
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 3.8e-149 533.1 725 56.1
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 6.5e-149 532.3 794 52.8
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 1.4e-148 531.2 740 53.8
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 9.4e-148 528.5 739 53.6
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 1.4e-146 524.6 756 54.4
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 1.1e-145 521.5 804 47.1
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 2.0e-145 520.8 750 52.7
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 2.5e-145 520.4 802 51.1
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 1.7e-144 517.7 805 51.4
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 1.7e-144 517.7 790 45.3
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 1.0e-141 508.4 782 52.6
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 1.3e-141 508.1 792 50.8
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 5.3e-135 486.1 760 44.1
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 1.2e-134 485.0 821 51.0
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 6.5e-133 479.2 739 51.6
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 5.5e-132 476.1 703 54.1
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 4.1e-119 433.3 772 41.8
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 3.8e-117 426.8 590 60.7
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 5.5e-108 396.4 814 45.5
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 8.6e-93 345.9 518 57.7
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 3.6e-91 340.5 505 49.9
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 1.4e-87 328.6 347 62.0
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 2.7e-86 324.3 642 35.8
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 6.4e-72 276.6 789 39.9
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 1.4e-71 275.4 276 68.8
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 2.3e-69 268.1 537 52.7
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 9.0e-66 256.1 615 45.7
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 3.0e-61 241.1 790 37.6
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 1.7e-56 225.3 230 54.3
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 1.4e-50 205.7 227 50.7
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 6.3e-43 180.3 314 50.0
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 1.5e-41 175.6 227 43.2
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 2.7e-38 164.9 489 34.2
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 3.4e-25 121.3 176 37.5
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 3.3e-20 104.8 169 37.3
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 3.7e-19 101.3 138 43.5
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 2.0e-17 95.5 106 49.1
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 1.3e-16 92.8 74 58.1
HanXRQChr11g0334591 Helianthus annuus HOM05D007104 ORTHO05D008851 2.8e-11 75.1 48 79.2
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 4.1e-10 71.2 237 45.6
PRCOL_00006441 Prasinoderma coloniale HOM05D007104 ORTHO05D008851 6.5e-08 63.9 199 24.6
Glyma.08G254000 Glycine max HOM05D004127 ORTHO05D005119 2.1e-06 58.9 176 25.0
Glyma.18G276500 Glycine max HOM05D004127 ORTHO05D005119 2.7e-06 58.5 176 24.4


User provided reference genes

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