Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 3.2e-187 658.3 337 100.0
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 7.4e-144 514.2 343 77.6
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 8.2e-135 484.2 306 76.5
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 9.1e-134 480.7 318 74.2
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 9.1e-134 480.7 318 74.2
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 5.0e-132 474.9 327 71.9
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 3.2e-131 472.2 309 78.6
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 7.2e-131 471.1 300 76.0
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 2.1e-130 469.5 303 74.3
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 5.2e-129 464.9 302 74.5
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 2.0e-128 463.0 306 73.5
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 3.4e-128 462.2 304 73.4
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 5.7e-128 461.5 302 73.8
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 5.7e-128 461.5 302 74.2
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 7.5e-128 461.1 314 72.6
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 9.8e-128 460.7 367 64.9
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 1.1e-126 457.2 313 72.2
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 2.4e-126 456.1 307 73.0
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 2.4e-126 456.1 319 70.5
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 5.4e-126 454.9 345 66.1
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 5.4e-126 454.9 307 73.0
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 7.0e-126 454.5 304 72.7
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 9.1e-126 454.1 301 72.4
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 2.7e-125 452.6 300 74.3
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 4.5e-125 451.8 308 70.8
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 5.9e-125 451.4 295 73.6
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 1.0e-124 450.7 300 73.3
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 1.3e-124 450.3 352 65.9
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.7e-124 449.9 347 67.4
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 1.7e-124 449.9 336 68.2
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 2.2e-124 449.5 355 65.1
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 2.2e-124 449.5 299 72.9
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 3.8e-124 448.7 292 74.3
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 5.0e-124 448.4 320 69.1
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 6.5e-124 448.0 332 68.4
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 8.5e-124 447.6 301 71.1
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.1e-123 447.2 347 66.9
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 1.5e-123 446.8 298 72.8
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 1.9e-123 446.4 343 66.8
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 1.9e-123 446.4 298 71.8
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 3.2e-123 445.7 351 65.0
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 5.5e-123 444.9 313 73.2
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 5.5e-123 444.9 347 64.3
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 5.5e-123 444.9 311 70.4
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 5.5e-123 444.9 304 71.4
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 7.2e-123 444.5 345 66.1
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 9.4e-123 444.1 342 66.1
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 1.2e-122 443.7 332 67.5
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 1.2e-122 443.7 301 71.4
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 1.2e-122 443.7 323 67.5
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 1.6e-122 443.4 303 69.6
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 2.1e-122 443.0 297 73.4
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 2.1e-122 443.0 309 69.6
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 2.7e-122 442.6 335 68.4
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 3.6e-122 442.2 319 66.5
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 3.6e-122 442.2 317 66.9
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 8.0e-122 441.0 309 71.2
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 8.0e-122 441.0 301 76.1
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 1.0e-121 440.7 308 68.8
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.0e-121 440.7 340 67.1
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 1.0e-121 440.7 338 67.5
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 1.8e-121 439.9 339 65.2
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 3.0e-121 439.1 341 66.6
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 4.0e-121 438.7 300 70.7
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 4.0e-121 438.7 317 69.4
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 5.2e-121 438.3 321 67.0
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 5.2e-121 438.3 304 75.7
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 2.6e-120 436.0 337 66.2
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 4.4e-120 435.3 300 72.7
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 4.4e-120 435.3 355 63.1
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 7.5e-120 434.5 301 70.4
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 9.8e-120 434.1 349 63.6
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 1.3e-119 433.7 335 66.0
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 1.3e-119 433.7 300 69.3
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 4.9e-119 431.8 307 70.0
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 1.1e-118 430.6 301 69.8
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 1.8e-118 429.9 326 66.3
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 2.4e-118 429.5 271 77.1
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 4.1e-118 428.7 307 70.0
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 1.0e-116 424.1 283 71.7
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 2.3e-116 422.9 289 72.7
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 1.5e-115 420.2 347 62.8
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 2.5e-115 419.5 275 74.2
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 2.8e-114 416.0 374 59.9
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 2.8e-114 416.0 299 68.2
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 3.6e-114 415.6 303 68.3
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 4.7e-114 415.2 351 62.7
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 1.0e-113 414.1 292 69.2
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 1.5e-112 410.2 292 68.5
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 1.7e-111 406.8 347 60.8
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 2.4e-110 402.9 336 64.3
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 6.6e-108 394.8 343 60.9
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 1.9e-107 393.3 303 65.3
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 4.3e-107 392.1 226 81.9
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 2.0e-101 373.2 319 58.9
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 3.5e-101 372.5 393 53.9
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 3.5e-101 372.5 306 62.1
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 5.0e-100 368.6 348 56.3
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 4.7e-98 362.1 235 74.9
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 6.2e-98 361.7 333 56.8
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 1.1e-97 360.9 356 57.0
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 1.4e-97 360.5 252 67.5
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 2.6e-96 356.3 281 66.9
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 2.2e-95 353.2 263 65.8
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 2.7e-93 346.3 246 66.7
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.3e-92 344.0 282 62.4
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 9.5e-91 337.8 222 72.1
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 6.4e-87 325.1 216 68.5
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 1.1e-83 314.3 242 65.7
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 5.8e-80 302.0 272 57.4
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 3.0e-76 289.7 252 58.7
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 2.0e-72 276.9 233 61.8
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 3.5e-69 266.2 187 71.1
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 1.3e-68 264.2 322 47.8
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 2.8e-66 256.5 214 58.4
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 2.4e-65 253.4 182 68.7
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 5.3e-65 252.3 172 75.6
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 2.0e-64 250.4 284 47.2
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 6.7e-60 235.3 199 54.8
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 2.5e-59 233.4 200 55.5
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 5.6e-59 232.3 206 53.9
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 6.2e-58 228.8 210 53.8
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 2.4e-57 226.9 190 57.4
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 1.9e-54 217.2 195 55.4
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 1.5e-48 197.6 225 46.7
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 5.9e-48 195.7 107 84.1
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 4.6e-45 186.0 328 39.3
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 1.5e-40 171.0 291 40.5
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 7.2e-38 162.2 198 54.5
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 3.9e-36 156.4 145 53.1
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 1.3e-34 151.4 87 73.6
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.3e-34 151.4 108 63.9
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 3.7e-34 149.8 100 67.0
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.5e-27 127.9 68 83.8
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 1.0e-23 115.2 109 57.8
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 6.1e-21 105.9 111 52.3
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 9.7e-19 98.6 97 56.7
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 5.0e-15 86.3 107 49.5
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 6.5e-15 85.9 65 60.0
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 1.1e-14 85.1 124 41.9
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.0e-12 78.6 50 72.0
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 3.0e-12 77.0 37 86.5
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 6.8e-12 75.9 81 46.9
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 4.1e-09 66.6 72 54.2
CBR_g12318 Chara braunii HOM05D000019 ORTHO05D008477 9.5e-06 55.5 40 52.5


User provided reference genes

Program Settings