Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 0.0e+00 1184.5 606 100.0
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 2.3e-228 795.8 523 78.0
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 1.3e-223 780.0 514 76.8
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 5.0e-223 778.1 515 76.9
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 6.5e-223 777.7 514 76.7
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 8.5e-223 777.3 521 75.6
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 5.5e-222 774.6 514 76.7
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 5.5e-222 774.6 521 75.2
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 6.1e-221 771.2 519 74.6
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 1.4e-220 770.0 474 81.6
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 6.7e-220 767.7 513 76.0
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 8.8e-220 767.3 532 73.3
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 1.1e-219 766.9 517 75.6
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 7.4e-219 764.2 505 76.6
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 2.2e-218 762.7 526 75.5
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.7e-218 761.9 519 74.2
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 4.8e-218 761.5 527 73.6
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 4.8e-218 761.5 516 75.2
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 6.3e-218 761.1 526 74.3
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 4.1e-217 758.4 514 74.1
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 5.3e-217 758.1 530 73.6
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.2e-216 756.9 488 77.9
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 1.5e-216 756.5 507 76.1
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 1.5e-216 756.5 526 73.0
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 1.5e-216 756.5 514 75.1
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 2.0e-216 756.1 515 74.0
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 5.9e-216 754.6 511 75.0
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.7e-215 753.1 514 73.2
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 5.0e-215 751.5 514 74.1
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.4e-214 750.0 510 76.1
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 4.2e-214 748.4 518 73.6
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 5.5e-214 748.0 519 72.8
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 3.9e-212 741.9 519 72.3
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 5.1e-212 741.5 454 81.5
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 3.3e-211 738.8 520 71.0
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 3.3e-211 738.8 502 73.7
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 3.3e-211 738.8 521 72.4
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 4.4e-211 738.4 521 73.3
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 7.4e-211 737.6 508 73.4
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 3.7e-210 735.3 504 71.8
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 1.1e-209 733.8 527 70.6
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 1.4e-209 733.4 518 70.3
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 2.4e-209 732.6 495 74.7
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 5.3e-209 731.5 497 74.2
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 9.1e-209 730.7 496 74.2
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 1.5e-208 729.9 522 70.1
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 4.5e-208 728.4 496 74.2
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 4.5e-208 728.4 495 74.1
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 5.9e-208 728.0 454 79.5
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 1.0e-207 727.2 516 73.1
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 1.7e-207 726.5 497 73.8
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 2.2e-207 726.1 526 71.5
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 2.2e-207 726.1 526 71.5
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 2.2e-207 726.1 526 71.5
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 2.2e-207 726.1 524 71.0
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 2.9e-207 725.7 497 73.8
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 2.9e-207 725.7 505 73.1
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 2.9e-207 725.7 497 73.8
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 3.8e-207 725.3 495 74.3
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 3.8e-207 725.3 510 70.8
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 3.8e-207 725.3 505 70.1
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 5.0e-207 724.9 496 73.6
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 6.5e-207 724.5 496 73.6
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 6.5e-207 724.5 497 73.4
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 6.5e-207 724.5 496 73.6
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 1.1e-206 723.8 526 71.3
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.5e-206 723.4 505 72.9
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 1.9e-206 723.0 527 69.3
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 2.5e-206 722.6 504 70.6
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 2.5e-206 722.6 517 70.8
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 3.2e-206 722.2 526 71.3
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 4.2e-206 721.8 505 72.7
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 4.2e-206 721.8 525 70.5
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 4.2e-206 721.8 483 75.2
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 9.4e-206 720.7 516 69.4
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 9.4e-206 720.7 483 75.2
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.2e-205 720.3 517 72.3
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 2.1e-205 719.5 516 69.4
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 4.7e-205 718.4 527 68.9
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.0e-204 717.2 516 69.0
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 2.3e-204 716.1 517 70.0
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 4.0e-204 715.3 532 68.6
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 4.0e-204 715.3 517 69.4
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 1.5e-203 713.4 491 73.3
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.6e-200 703.4 518 68.5
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.9e-198 696.4 516 68.2
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 9.4e-198 694.1 523 66.3
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 2.1e-197 693.0 516 66.7
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 6.1e-197 691.4 496 70.6
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 8.8e-196 687.6 509 69.7
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.4e-193 680.2 518 67.2
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 2.4e-193 679.5 508 66.3
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 3.1e-193 679.1 427 79.2
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 9.1e-193 677.6 522 66.1
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 2.2e-191 672.9 511 66.5
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 2.2e-191 672.9 505 66.5
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 5.0e-191 671.8 505 66.5
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 8.5e-191 671.0 529 64.8
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 7.2e-190 667.9 530 66.0
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 7.2e-190 667.9 502 65.9
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 2.7e-189 666.0 443 76.3
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.4e-188 663.7 525 63.6
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 5.2e-188 661.8 527 63.9
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 4.4e-187 658.7 518 64.1
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 1.3e-186 657.1 521 63.7
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 6.3e-186 654.8 454 69.6
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 4.1e-185 652.1 521 62.6
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 7.7e-184 647.9 454 69.4
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 3.8e-183 645.6 514 62.8
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 1.0e-180 637.5 523 62.5
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 5.7e-179 631.7 502 62.9
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 1.1e-174 617.5 510 61.2
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 1.5e-174 617.1 505 61.6
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 7.3e-174 614.8 425 73.4
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 2.5e-166 589.7 383 75.7
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 7.3e-166 588.2 377 77.5
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 1.5e-163 580.5 379 76.8
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 6.0e-160 568.5 522 57.5
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 3.9e-159 565.8 454 62.6
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 1.1e-148 531.2 503 56.1
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.1e-148 531.2 392 65.8
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 7.3e-142 508.4 351 70.7
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 4.8e-141 505.8 311 78.8
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.4e-140 503.4 376 64.9
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.8e-127 460.7 345 69.0
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.8e-127 460.7 466 49.8
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 7.4e-126 455.3 577 44.9
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.1e-124 451.4 459 50.3
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 2.6e-123 446.8 316 67.7
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 3.2e-113 413.3 553 42.0
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 6.7e-103 379.0 539 38.6
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.4e-95 354.8 217 81.1
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 6.3e-85 319.3 244 68.4
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 2.7e-72 277.3 195 70.3
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 3.2e-60 237.3 152 77.6
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 1.6e-59 235.0 173 68.8
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.0e-59 234.6 201 63.7
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 3.4e-54 217.2 176 58.5
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.9e-44 184.9 142 69.0
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.7e-42 178.3 127 73.2
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 3.0e-42 177.6 160 56.9
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 8.6e-42 176.0 132 71.2
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 1.3e-34 152.1 126 64.3
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 3.3e-33 147.5 97 73.2
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 5.8e-30 136.7 150 50.7
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 2.5e-25 121.3 117 54.7
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 1.4e-20 105.5 71 69.0
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.2e-20 104.4 503 24.9
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 4.2e-20 104.0 74 74.3
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 3.5e-19 100.9 455 24.6
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 4.9e-13 80.5 67 55.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 4.9e-13 80.5 67 55.2
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 8.2e-08 63.2 45 62.2
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.1e-07 62.8 46 60.9
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 5.3e-07 60.5 46 60.9


User provided reference genes

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