Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 4.3e-80 301.2 145 100.0
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 3.0e-73 278.5 146 92.5
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 7.3e-64 247.3 148 85.1
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 6.2e-63 244.2 145 79.3
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 8.9e-62 240.4 147 78.9
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 4.4e-61 238.0 146 77.4
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 7.5e-61 237.3 143 79.7
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 7.5e-61 237.3 143 79.7
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 7.5e-61 237.3 143 79.7
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 1.3e-60 236.5 146 78.1
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 1.3e-60 236.5 146 78.1
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 1.7e-60 236.1 142 79.6
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 1.7e-60 236.1 142 79.6
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 1.7e-60 236.1 146 77.4
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 3.7e-60 235.0 143 78.3
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 3.7e-60 235.0 146 77.4
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 6.4e-60 234.2 142 80.3
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 8.3e-60 233.8 143 76.9
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 8.3e-60 233.8 143 76.9
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 1.1e-59 233.4 143 76.9
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 5.4e-59 231.1 143 78.3
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 5.4e-59 231.1 140 78.6
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 9.2e-59 230.3 140 76.4
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 1.2e-58 229.9 143 76.9
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 2.1e-58 229.2 144 75.0
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 2.7e-58 228.8 140 76.4
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 2.7e-58 228.8 140 76.4
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 2.7e-58 228.8 147 75.5
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 3.5e-58 228.4 140 77.1
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 7.8e-58 227.3 144 76.4
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 1.0e-57 226.9 146 74.7
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 1.0e-57 226.9 144 75.0
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 1.3e-57 226.5 144 76.4
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 1.3e-57 226.5 147 75.5
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 1.7e-57 226.1 144 75.7
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 2.3e-57 225.7 147 74.8
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 3.0e-57 225.3 145 75.9
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 3.9e-57 224.9 143 74.1
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 5.1e-57 224.6 142 75.4
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 6.6e-57 224.2 144 75.0
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 1.1e-56 223.4 137 77.4
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 1.5e-56 223.0 140 75.0
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 4.3e-56 221.5 144 75.0
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 9.5e-56 220.3 140 72.9
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 9.5e-56 220.3 141 75.2
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 1.6e-55 219.5 144 72.2
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 2.8e-55 218.8 142 73.2
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 2.8e-55 218.8 139 72.7
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 2.8e-55 218.8 140 73.6
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 3.6e-55 218.4 140 73.6
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 3.6e-55 218.4 144 73.6
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 3.6e-55 218.4 115 84.3
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 3.6e-55 218.4 143 74.8
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 3.6e-55 218.4 144 72.9
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 3.6e-55 218.4 145 73.1
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 4.7e-55 218.0 143 72.0
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 6.2e-55 217.6 141 76.6
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 8.1e-55 217.2 140 72.9
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 8.1e-55 217.2 143 74.1
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 1.1e-54 216.9 144 72.2
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 1.4e-54 216.5 175 64.0
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 1.8e-54 216.1 145 71.7
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 3.1e-54 215.3 145 70.3
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 3.1e-54 215.3 144 74.3
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 5.2e-54 214.5 141 71.6
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 5.2e-54 214.5 142 72.5
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 8.9e-54 213.8 143 74.1
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 8.9e-54 213.8 146 71.9
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 8.9e-54 213.8 137 75.9
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 8.9e-54 213.8 140 70.7
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 1.2e-53 213.4 113 84.1
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 1.2e-53 213.4 144 73.6
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 2.0e-53 212.6 141 74.5
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 2.6e-53 212.2 114 82.5
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 7.6e-53 210.7 145 68.3
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 1.3e-52 209.9 142 69.7
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 2.2e-52 209.1 143 71.3
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 2.2e-52 209.1 144 72.2
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 3.8e-52 208.4 144 71.5
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 8.4e-52 207.2 139 72.7
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 1.1e-51 206.8 144 71.5
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 1.1e-51 206.8 144 69.4
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 1.9e-51 206.1 144 69.4
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 1.9e-51 206.1 140 72.9
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 2.4e-51 205.7 142 72.5
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 9.2e-51 203.8 143 71.3
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 1.2e-50 203.4 149 70.5
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 1.2e-50 203.4 144 68.1
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 2.1e-50 202.6 143 70.6
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 1.3e-49 199.9 145 70.3
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 1.7e-49 199.5 143 67.8
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 2.3e-49 199.1 142 72.5
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 3.9e-49 198.4 142 71.8
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 6.6e-49 197.6 117 78.6
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 6.6e-49 197.6 139 72.7
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 8.7e-49 197.2 142 69.0
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 1.5e-48 196.4 114 78.1
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 1.5e-48 196.4 141 68.8
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 1.9e-48 196.1 142 71.8
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 2.5e-48 195.7 145 68.3
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 3.3e-48 195.3 142 70.4
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 4.3e-48 194.9 120 78.3
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 5.2e-46 188.0 146 64.4
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 1.2e-45 186.8 136 67.6
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 5.8e-45 184.5 143 63.6
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 4.9e-44 181.4 99 82.8
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 3.2e-43 178.7 137 65.7
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 4.2e-43 178.3 145 64.1
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 9.3e-43 177.2 139 61.9
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 3.5e-42 175.3 144 63.2
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 3.0e-41 172.2 89 86.5
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 7.3e-40 167.5 87 87.4
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 1.3e-39 166.8 89 83.1
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 1.4e-38 163.3 114 70.2
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 6.9e-38 161.0 117 71.8
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 9.0e-38 160.6 120 65.8
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 5.8e-37 157.9 112 68.8
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 2.2e-36 156.0 117 63.2
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 2.8e-31 139.0 114 65.8
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 6.2e-31 137.9 114 64.0
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 9.0e-30 134.0 88 70.5
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 2.0e-29 132.9 114 60.5
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 7.6e-29 131.0 110 63.6
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 1.7e-28 129.8 140 50.7
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 3.2e-27 125.6 113 61.9
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 1.1e-24 117.1 85 65.9
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 4.9e-20 101.7 91 52.7
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 1.2e-18 97.1 81 56.8
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 2.3e-17 92.8 104 43.3
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 8.7e-17 90.9 78 61.5
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 1.6e-15 86.7 154 39.6
Gohir.A07G111250 Gossypium hirsutum HOM05D005659 ORTHO05D007059 1.8e-09 66.6 66 56.1
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 3.0e-09 65.9 67 55.2
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 4.3e-08 62.0 70 52.9


User provided reference genes

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