Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0127341 Helianthus annuus HOM05D013023 ORTHO05D222451 8.4e-91 337.0 175 100.0
HanXRQChr04g0127361 Helianthus annuus HOM05D013023 ORTHO05D227252 1.4e-82 309.7 179 91.6
HanXRQChr04g0127301 Helianthus annuus HOM05D013023 ORTHO05D219700 2.7e-81 305.4 179 86.0
HanXRQChr04g0127321 Helianthus annuus HOM05D013023 ORTHO05D219833 2.2e-70 269.2 176 78.4
HanXRQChr04g0127271 Helianthus annuus HOM05D013023 ORTHO05D000515 9.1e-69 263.8 176 73.9
HanXRQChr16g0499581 Helianthus annuus HOM05D013023 ORTHO05D225105 1.5e-66 256.5 177 74.0
HanXRQChr04g0127141 Helianthus annuus HOM05D013023 ORTHO05D224213 1.6e-65 253.1 175 72.6
HanXRQChr16g0499711 Helianthus annuus HOM05D013023 ORTHO05D226073 2.9e-59 232.3 178 73.0
HanXRQChr10g0319181 Helianthus annuus HOM05D013023 ORTHO05D007045 1.1e-50 203.8 179 64.2
HanXRQChr10g0319211 Helianthus annuus HOM05D013023 ORTHO05D227658 1.1e-50 203.8 138 72.5
HanXRQChr04g0127201 Helianthus annuus HOM05D013023 ORTHO05D222573 6.8e-40 167.9 122 77.9
HanXRQChr13g0404121 Helianthus annuus HOM05D000687 ORTHO05D000515 6.8e-16 88.2 135 37.8
Lsat_1_v5_gn_2_101660 Lactuca sativa HOM05D000687 ORTHO05D000515 4.1e-13 79.0 170 30.6
HanXRQChr14g0453341 Helianthus annuus HOM05D000687 ORTHO05D000515 4.6e-12 75.5 138 33.3
ECA238G1047 Erigeron canadensis HOM05D000687 ORTHO05D000515 3.9e-11 72.4 147 28.6
Dinv13433 Davidia involucrata HOM05D000687 ORTHO05D000515 1.9e-10 70.1 156 26.3
Nitab4.5_0000254g0250 Nicotiana tabacum HOM05D000687 ORTHO05D000515 3.3e-10 69.3 143 28.7
Actinidia39361 Actinidia chinensis HOM05D000687 ORTHO05D000515 7.3e-10 68.2 172 27.3
Prupe.6G009800 Prunus persica HOM05D000687 ORTHO05D000515 1.2e-09 67.4 140 30.0
HPP92_020683 Vanilla planifolia HOM05D000687 ORTHO05D000515 1.6e-09 67.0 154 29.9
HanXRQChr13g0405131 Helianthus annuus HOM05D013023 ORTHO05D226889 2.1e-09 66.6 145 30.3
PGR119G0386 Punica granatum HOM05D000687 ORTHO05D000515 2.8e-09 66.2 127 32.3
MSTRG.20949 Avicennia marina HOM05D000687 ORTHO05D000515 3.6e-09 65.9 129 29.5
Duzib150G1088 Durio zibethinus HOM05D000687 ORTHO05D000515 3.6e-09 65.9 137 29.9
FAN21G3570 Fragaria x ananassa HOM05D000687 ORTHO05D000515 3.6e-09 65.9 121 31.4
Ciclev10016930m.g Citrus clementina HOM05D000687 ORTHO05D000515 6.2e-09 65.1 155 28.4
SEGI_40499 Sequoiadendron giganteum HOM05D000687 ORTHO05D000515 6.2e-09 65.1 121 33.9
Gohir.D08G089400 Gossypium hirsutum HOM05D000687 ORTHO05D000515 8.1e-09 64.7 147 27.9
Sed0021744 Sechium edule HOM05D000687 ORTHO05D000515 8.1e-09 64.7 139 29.5
Lj1P549T8 Lonicera japonica HOM05D000687 ORTHO05D000515 1.1e-08 64.3 128 32.0
Lj1P552T9 Lonicera japonica HOM05D000687 ORTHO05D000515 1.1e-08 64.3 128 32.0
Eucgr.J01799 Eucalyptus grandis HOM05D000687 ORTHO05D000515 1.4e-08 63.9 150 30.0
FvH4_3g44860 Fragaria vesca HOM05D000687 ORTHO05D000515 1.4e-08 63.9 135 29.6
FAN11G2469 Fragaria x ananassa HOM05D000687 ORTHO05D000515 1.4e-08 63.9 135 29.6
Manes.03G088300 Manihot esculenta HOM05D000687 ORTHO05D000515 1.4e-08 63.9 145 27.6
MELO3C014673.2 Cucumis melo HOM05D000687 ORTHO05D000515 1.8e-08 63.5 139 28.1
CsaV3_4G023420 Cucumis sativus L. HOM05D000687 ORTHO05D000515 1.8e-08 63.5 139 28.1
Gohir.A08G079650 Gossypium hirsutum HOM05D000687 ORTHO05D000515 1.8e-08 63.5 146 27.4
Psat7g073400 Pisum sativum HOM05D000687 ORTHO05D000515 1.8e-08 63.5 74 41.9
SalBow6G5952 Salvia bowleyana HOM05D000687 ORTHO05D000515 1.8e-08 63.5 149 30.2
CAN.G190.3 Capsicum annuum HOM05D000687 ORTHO05D000515 2.4e-08 63.2 168 28.6
FAN25G1069 Fragaria x ananassa HOM05D000687 ORTHO05D000515 2.4e-08 63.2 121 30.6
Gohir.A13G005100 Gossypium hirsutum HOM05D000687 ORTHO05D000515 2.4e-08 63.2 151 29.1
PSO384G0183 Papaver somniferum HOM05D000687 ORTHO05D000515 3.1e-08 62.8 78 41.0
unitig_26.g9442 Utricularia gibba HOM05D001030 ORTHO05D002278 3.1e-08 62.8 85 37.6
Cc01_g02430 Coffea canephora HOM05D000687 ORTHO05D000515 4.0e-08 62.4 168 29.2
FAN16G1395 Fragaria x ananassa HOM05D000687 ORTHO05D000515 4.0e-08 62.4 121 30.6
MD11G1011000 Malus domestica HOM05D000687 ORTHO05D000515 4.0e-08 62.4 123 30.1
Nitab4.5_0001059g0040 Nicotiana tabacum HOM05D000687 ORTHO05D000515 4.0e-08 62.4 152 27.0
Nitab4.5_0003190g0040 Nicotiana tabacum HOM05D000687 ORTHO05D000515 4.0e-08 62.4 124 29.0
SGA_v2.0_scaffold18G08314 Striga asiatica HOM05D000687 ORTHO05D000515 4.0e-08 62.4 154 27.3
vmacro12614 Vaccinium macrocarpon HOM05D000687 ORTHO05D000515 4.0e-08 62.4 149 28.2
GSVIVG01033439001 Vitis vinifera HOM05D000687 ORTHO05D000515 4.0e-08 62.4 120 30.0
Gohir.D13G004800 Gossypium hirsutum HOM05D000687 ORTHO05D000515 5.2e-08 62.0 151 29.1
Lj2P716T13 Lonicera japonica HOM05D000687 ORTHO05D000515 5.2e-08 62.0 120 30.8
Oeu040302.1 Olea europaea HOM05D000687 ORTHO05D000515 5.2e-08 62.0 159 25.8
Thecc.09G211100 Theobroma cacao HOM05D000687 ORTHO05D000515 5.2e-08 62.0 137 28.5
Cfa009609 Carpinus fangiana HOM05D000687 ORTHO05D000515 6.8e-08 61.6 120 30.0
Haze_22981 Corylus avellana HOM05D000687 ORTHO05D000515 6.8e-08 61.6 120 30.0
Gorai.013G005200 Gossypium raimondii HOM05D000687 ORTHO05D000515 6.8e-08 61.6 151 29.1
HanXRQChr13g0405121 Helianthus annuus HOM05D013023 ORTHO05D221139 6.8e-08 61.6 104 32.7
Manes.15G105900 Manihot esculenta HOM05D000687 ORTHO05D000515 6.8e-08 61.6 124 28.2
Solyc01g005980.4 Solanum lycopersicum HOM05D000687 ORTHO05D000515 6.8e-08 61.6 151 27.2
Sopen01g001990 Solanum pennellii HOM05D000687 ORTHO05D000515 6.8e-08 61.6 151 27.2
Actinidia06290 Actinidia chinensis HOM05D000687 ORTHO05D000515 8.9e-08 61.2 130 29.2
Gorai.004G094100 Gossypium raimondii HOM05D000687 ORTHO05D000515 8.9e-08 61.2 145 26.9
HanXRQChr11g0344901 Helianthus annuus HOM05D000687 ORTHO05D000515 8.9e-08 61.2 74 40.5
Nn7g35925 Nelumbo nucifera HOM05D000687 ORTHO05D000515 8.9e-08 61.2 130 28.5
SGA_v2.0_scaffold6G03426 Striga asiatica HOM05D000687 ORTHO05D000515 8.9e-08 61.2 150 28.0
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.2e-07 60.8 131 27.5
Migut.D02528 Erythranthe guttata HOM05D000687 ORTHO05D000515 1.2e-07 60.8 126 29.4
SEGI_30105 Sequoiadendron giganteum HOM05D000687 ORTHO05D000515 1.2e-07 60.8 120 30.8
TWI60G1469 Tripterygium wilfordii HOM05D000687 ORTHO05D000515 1.2e-07 60.8 123 29.3
Cpa.g.c39995 Carica papaya HOM05D000687 ORTHO05D000515 1.5e-07 60.5 130 27.7
Cpa.g.sc119.80 Carica papaya HOM05D000687 ORTHO05D000515 1.5e-07 60.5 126 27.8
ClCG02G023930 Citrullus lanatus HOM05D000687 ORTHO05D000515 1.5e-07 60.5 129 27.9
PGSC0003DMG400032181 Solanum tuberosum HOM05D000687 ORTHO05D000515 1.5e-07 60.5 138 29.7
vmacro09594 Vaccinium macrocarpon HOM05D000687 ORTHO05D000515 1.5e-07 60.5 120 30.8
arahy.Tifrunner.gnm1.ann1.3SGI17 Arachis hypogaea HOM05D000001 ORTHO05D001705 2.0e-07 60.1 82 39.0
CSS0032662 Camellia sinensis var. sinensis HOM05D000687 ORTHO05D000515 2.0e-07 60.1 147 27.2
MELO3C015079.2 Cucumis melo HOM05D000687 ORTHO05D000515 2.0e-07 60.1 120 29.2
Medtr8g085590 Medicago truncatula HOM05D000687 ORTHO05D000515 2.0e-07 60.1 74 37.8
Oeu033929.1 Olea europaea HOM05D000687 ORTHO05D000515 2.0e-07 60.1 124 32.3
RcHm_v2.0_Chr5g0081571 Rosa chinensis HOM05D000687 ORTHO05D000515 2.0e-07 60.1 124 29.0
Hund07575 Selenicereus undatus HOM05D000687 ORTHO05D000515 2.0e-07 60.1 144 27.1
TAR623G1466 Trochodendron aralioides HOM05D000687 ORTHO05D000515 2.0e-07 60.1 144 25.7
TAR633G2389 Trochodendron aralioides HOM05D000687 ORTHO05D000515 2.0e-07 60.1 127 28.3
TAR633G2591 Trochodendron aralioides HOM05D000687 ORTHO05D000515 2.0e-07 60.1 127 28.3
arahy.Tifrunner.gnm1.ann1.H8CKZE Arachis hypogaea HOM05D000687 ORTHO05D000515 2.6e-07 59.7 154 26.0
CAN.G158.8 Capsicum annuum HOM05D000687 ORTHO05D000515 2.6e-07 59.7 122 30.3
CAN.G575.6 Capsicum annuum HOM05D000687 ORTHO05D000515 2.6e-07 59.7 127 30.7
Hma1.2p1_1769F.1_g301600 Hydrangea macrophylla HOM05D000687 ORTHO05D000515 2.6e-07 59.7 190 26.8
Nn7g35923 Nelumbo nucifera HOM05D000687 ORTHO05D000515 2.6e-07 59.7 142 26.8
CSS0021648 Camellia sinensis var. sinensis HOM05D000687 ORTHO05D000515 3.4e-07 59.3 147 27.2
DCAR_024335 Daucus carota HOM05D000687 ORTHO05D000515 3.4e-07 59.3 73 41.1
Glyma.08G112400 Glycine max HOM05D000687 ORTHO05D000515 3.4e-07 59.3 132 27.3
Hma1.2p1_0824F.1_g224730 Hydrangea macrophylla HOM05D000687 ORTHO05D000515 3.4e-07 59.3 190 26.8
QL01p008041 Quercus lobata HOM05D000687 ORTHO05D000515 3.4e-07 59.3 73 39.7
Sc09g0000230 Simmondsia chinensis HOM05D000687 ORTHO05D000515 3.4e-07 59.3 82 35.4
THA.LOC104815660 Tarenaya hassleriana HOM05D000687 ORTHO05D000515 3.4e-07 59.3 123 31.7
HPP92_015917 Vanilla planifolia HOM05D000687 ORTHO05D000515 3.4e-07 59.3 76 39.5
arahy.Tifrunner.gnm1.ann1.6YF7SG Arachis hypogaea HOM05D000687 ORTHO05D000515 4.4e-07 58.9 154 26.0
CiPaw.13G174300 Carya illinoinensis HOM05D000687 ORTHO05D000515 4.4e-07 58.9 122 29.5
CiPaw.13G174400 Carya illinoinensis HOM05D000687 ORTHO05D000515 4.4e-07 58.9 136 28.7
Eucgr.J01800 Eucalyptus grandis HOM05D000687 ORTHO05D000515 4.4e-07 58.9 73 37.0
Rhsim01G0185400 Rhododendron simsii HOM05D000687 ORTHO05D000515 4.4e-07 58.9 120 29.2
Duzib170G0232 Durio zibethinus HOM05D000687 ORTHO05D000515 5.8e-07 58.5 134 27.6
MBI01_g48123_MAGBIO Magnolia biondii HOM05D000687 ORTHO05D000515 5.8e-07 58.5 131 27.5
Potri.003G217200 Populus trichocarpa HOM05D000687 ORTHO05D000515 5.8e-07 58.5 129 31.8
Sabra03G0162200 Salix brachista HOM05D000687 ORTHO05D000515 5.8e-07 58.5 129 31.0
TPR.G11818 Trifolium pratense HOM05D000687 ORTHO05D000515 5.8e-07 58.5 74 37.8
BcaB02g10833 Brassica carinata HOM05D000687 ORTHO05D000515 7.6e-07 58.2 122 32.0
Cc05_g12970 Coffea canephora HOM05D000687 ORTHO05D000515 7.6e-07 58.2 127 29.9
Hma1.2p1_0843F.1_g227200 Hydrangea macrophylla HOM05D000687 ORTHO05D000515 7.6e-07 58.2 173 25.4
Manes.03G088200 Manihot esculenta HOM05D000687 ORTHO05D000515 7.6e-07 58.2 100 31.0
Phvul.002G234500 Phaseolus vulgaris HOM05D000687 ORTHO05D000515 7.6e-07 58.2 121 27.3
Haze_22980 Corylus avellana HOM05D000687 ORTHO05D000515 9.9e-07 57.8 136 26.5
Glyma.05G154700 Glycine max HOM05D000687 ORTHO05D000515 9.9e-07 57.8 132 26.5
Gorai.009G341700 Gossypium raimondii HOM05D000687 ORTHO05D000515 9.9e-07 57.8 132 25.0
Lj4g0008393 Lotus japonicus HOM05D000687 ORTHO05D000515 9.9e-07 57.8 119 27.7
Peaxi162Scf00100g00048 Petunia axillaris HOM05D000687 ORTHO05D000515 9.9e-07 57.8 124 29.0
PGR102G2471 Punica granatum HOM05D000687 ORTHO05D000515 9.9e-07 57.8 119 31.9
QL01p008034 Quercus lobata HOM05D000687 ORTHO05D000515 9.9e-07 57.8 129 26.4
MBI01_g46866_MAGBIO Magnolia biondii HOM05D000687 ORTHO05D000515 1.3e-06 57.4 120 27.5
MBI01_g48122_MAGBIO Magnolia biondii HOM05D000687 ORTHO05D000515 1.3e-06 57.4 120 27.5
MD03G1007800 Malus domestica HOM05D000687 ORTHO05D000515 1.3e-06 57.4 120 30.8
RcHm_v2.0_Chr5g0082391 Rosa chinensis HOM05D000687 ORTHO05D000515 1.3e-06 57.4 87 35.6
Sopen01g016530 Solanum pennellii HOM05D000687 ORTHO05D000515 1.3e-06 57.4 163 27.6
Actinidia06289 Actinidia chinensis HOM05D000687 ORTHO05D000515 1.7e-06 57.0 79 35.4
FvH4_3g44990 Fragaria vesca HOM05D000687 ORTHO05D000515 1.7e-06 57.0 87 35.6
Oeu005437.1 Olea europaea HOM05D000687 ORTHO05D000515 1.7e-06 57.0 121 29.8
Potri.001G008320 Populus trichocarpa HOM05D000687 ORTHO05D000515 1.7e-06 57.0 75 40.0
RcHm_v2.0_Chr5g0081761 Rosa chinensis HOM05D000687 ORTHO05D000515 1.7e-06 57.0 87 35.6
RcHm_v2.0_Chr5g0082231 Rosa chinensis HOM05D000687 ORTHO05D000515 1.7e-06 57.0 87 35.6
RcHm_v2.0_Chr5g0082531 Rosa chinensis HOM05D000687 ORTHO05D000515 1.7e-06 57.0 87 35.6
TWI32G0573 Tripterygium wilfordii HOM05D000687 ORTHO05D000515 1.7e-06 57.0 120 31.7
Atru.chr3.2283 Acer truncatum HOM05D000687 ORTHO05D000515 2.2e-06 56.6 125 28.8
Aqoxy1G00070 Aquilegia oxysepala HOM05D000687 ORTHO05D000515 2.2e-06 56.6 125 28.8
Gohir.D05G318700 Gossypium hirsutum HOM05D000687 ORTHO05D000515 2.2e-06 56.6 132 24.2
Peaxi162Scf00336g00036 Petunia axillaris HOM05D000687 ORTHO05D000515 2.2e-06 56.6 72 40.3
SEGI_27636 Sequoiadendron giganteum HOM05D000687 ORTHO05D000515 2.2e-06 56.6 70 40.0
THA.LOC104807530 Tarenaya hassleriana HOM05D000687 ORTHO05D000515 2.2e-06 56.6 159 25.2
BcaC08g44184 Brassica carinata HOM05D000687 ORTHO05D000515 2.9e-06 56.2 122 30.3
BolC6t36781H Brassica oleracea HOM05D000687 ORTHO05D000515 2.9e-06 56.2 122 30.3
Thhalv10011815m.g Eutrema salsugineum HOM05D000687 ORTHO05D000515 2.9e-06 56.2 129 30.2
RcHm_v2.0_Chr5g0082001 Rosa chinensis HOM05D000687 ORTHO05D000515 2.9e-06 56.2 87 35.6
Sp1g40930 Schrenkiella parvula HOM05D000687 ORTHO05D000515 2.9e-06 56.2 121 28.9
VMungo0251G1329 Vigna mungo HOM05D000687 ORTHO05D000515 2.9e-06 56.2 123 26.8
A05p17590 Brassica napus HOM05D000687 ORTHO05D000515 3.8e-06 55.8 122 30.3
C06p15890 Brassica napus HOM05D000687 ORTHO05D000515 3.8e-06 55.8 122 30.3
BraA05t20652Z Brassica rapa HOM05D000687 ORTHO05D000515 3.8e-06 55.8 122 30.3
Carub.0001s4377 Capsella rubella HOM05D000687 ORTHO05D000515 3.8e-06 55.8 124 32.3
Dinv22330 Davidia involucrata HOM05D000687 ORTHO05D000515 3.8e-06 55.8 124 28.2
MD03G1007700 Malus domestica HOM05D000687 ORTHO05D000515 3.8e-06 55.8 87 34.5
Sc09g0000240 Simmondsia chinensis HOM05D000687 ORTHO05D000515 3.8e-06 55.8 87 32.2
Thecc.09G211300 Theobroma cacao HOM05D000687 ORTHO05D000515 3.8e-06 55.8 132 25.0
Aa31LG10G1030 Aethionema arabicum HOM05D001204 ORTHO05D001428 4.9e-06 55.5 123 29.3
CDE05G3074 Ceratophyllum demersum HOM05D000687 ORTHO05D000515 4.9e-06 55.5 120 28.3
COL.COLO4_09534 Corchorus olitorius HOM05D000687 ORTHO05D000515 4.9e-06 55.5 134 29.9
Duzib150G0869 Durio zibethinus HOM05D000687 ORTHO05D000515 4.9e-06 55.5 128 25.8
Medtr8g085580 Medicago truncatula HOM05D000687 ORTHO05D000515 4.9e-06 55.5 125 26.4
RcHm_v2.0_Chr5g0082171 Rosa chinensis HOM05D000687 ORTHO05D000515 4.9e-06 55.5 87 34.5
vmacro12613 Vaccinium macrocarpon HOM05D000687 ORTHO05D000515 4.9e-06 55.5 131 29.0
CsaV3_1G043700 Cucumis sativus L. HOM05D000687 ORTHO05D000515 6.4e-06 55.1 120 29.2
Dinv02832 Davidia involucrata HOM05D000687 ORTHO05D000515 6.4e-06 55.1 127 28.3
ECA248G1975 Erigeron canadensis HOM05D000687 ORTHO05D000515 6.4e-06 55.1 74 36.5
Gohir.A05G317000 Gossypium hirsutum HOM05D000687 ORTHO05D000515 6.4e-06 55.1 76 31.6
Nitab4.5_0000775g0110 Nicotiana tabacum HOM05D000687 ORTHO05D000515 6.4e-06 55.1 102 31.4
Phvul.011G146900 Phaseolus vulgaris HOM05D000687 ORTHO05D000515 6.4e-06 55.1 121 29.8
Potri.003G217300 Populus trichocarpa HOM05D000687 ORTHO05D000515 6.4e-06 55.1 73 34.2
HPP92_012338 Vanilla planifolia HOM05D000687 ORTHO05D000515 6.4e-06 55.1 124 30.6
HPP92_012375 Vanilla planifolia HOM05D000687 ORTHO05D000515 6.4e-06 55.1 124 30.6
HPP92_015938 Vanilla planifolia HOM05D000687 ORTHO05D000515 6.4e-06 55.1 104 32.7
HPP92_017555 Vanilla planifolia HOM05D000687 ORTHO05D000515 6.4e-06 55.1 130 30.8
CiPaw.10G113600 Carya illinoinensis HOM05D000687 ORTHO05D000515 8.4e-06 54.7 142 27.5
Hma1.2p1_0843F.1_g227220 Hydrangea macrophylla HOM05D000687 ORTHO05D000515 8.4e-06 54.7 123 28.5
Lj8P163T31 Lonicera japonica HOM05D000687 ORTHO05D000515 8.4e-06 54.7 121 28.1
Prupe.6G009400 Prunus persica HOM05D000687 ORTHO05D000515 8.4e-06 54.7 76 34.2
THA.LOC104810335 Tarenaya hassleriana HOM05D000687 ORTHO05D000515 8.4e-06 54.7 145 28.3


User provided reference genes

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