Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0127201 Helianthus annuus HOM05D013023 ORTHO05D222573 7.7e-74 280.4 143 100.0
HanXRQChr04g0127341 Helianthus annuus HOM05D013023 ORTHO05D222451 1.5e-40 169.9 122 77.9
HanXRQChr04g0127271 Helianthus annuus HOM05D013023 ORTHO05D000515 5.5e-40 167.9 122 68.9
HanXRQChr04g0127361 Helianthus annuus HOM05D013023 ORTHO05D227252 9.5e-40 167.2 122 77.9
HanXRQChr04g0127301 Helianthus annuus HOM05D013023 ORTHO05D219700 8.0e-39 164.1 122 68.9
HanXRQChr16g0499581 Helianthus annuus HOM05D013023 ORTHO05D225105 8.6e-33 144.1 114 65.8
HanXRQChr04g0127141 Helianthus annuus HOM05D013023 ORTHO05D224213 1.9e-32 142.9 122 61.5
HanXRQChr04g0127321 Helianthus annuus HOM05D013023 ORTHO05D219833 1.0e-30 137.1 122 57.4
HanXRQChr16g0499711 Helianthus annuus HOM05D013023 ORTHO05D226073 2.4e-27 125.9 123 62.6
HanXRQChr10g0319181 Helianthus annuus HOM05D013023 ORTHO05D007045 2.3e-25 119.4 116 55.2
HanXRQChr10g0319211 Helianthus annuus HOM05D013023 ORTHO05D227658 7.5e-21 104.4 73 63.0
Psat7g073400 Pisum sativum HOM05D000687 ORTHO05D000515 2.1e-10 69.7 74 43.2
HanXRQChr11g0344901 Helianthus annuus HOM05D000687 ORTHO05D000515 2.7e-10 69.3 84 35.7
PSO384G0183 Papaver somniferum HOM05D000687 ORTHO05D000515 6.0e-10 68.2 78 39.7
CiPaw.13G174400 Carya illinoinensis HOM05D000687 ORTHO05D000515 1.7e-09 66.6 81 38.3
Actinidia06289 Actinidia chinensis HOM05D000687 ORTHO05D000515 3.9e-09 65.5 101 33.7
Dinv13433 Davidia involucrata HOM05D000687 ORTHO05D000515 3.9e-09 65.5 82 34.1
Sc09g0000230 Simmondsia chinensis HOM05D000687 ORTHO05D000515 3.9e-09 65.5 82 35.4
FvH4_3g44990 Fragaria vesca HOM05D000687 ORTHO05D000515 5.1e-09 65.1 115 32.2
TPR.G11818 Trifolium pratense HOM05D000687 ORTHO05D000515 5.1e-09 65.1 79 39.2
Haze_22981 Corylus avellana HOM05D000687 ORTHO05D000515 6.6e-09 64.7 106 32.1
Eucgr.J01800 Eucalyptus grandis HOM05D000687 ORTHO05D000515 6.6e-09 64.7 73 38.4
QL01p008041 Quercus lobata HOM05D000687 ORTHO05D000515 6.6e-09 64.7 73 39.7
Manes.03G088200 Manihot esculenta HOM05D000687 ORTHO05D000515 8.6e-09 64.3 108 34.3
Medtr8g085590 Medicago truncatula HOM05D000687 ORTHO05D000515 8.6e-09 64.3 74 39.2
RcHm_v2.0_Chr5g0081761 Rosa chinensis HOM05D000687 ORTHO05D000515 8.6e-09 64.3 87 36.8
RcHm_v2.0_Chr5g0082231 Rosa chinensis HOM05D000687 ORTHO05D000515 8.6e-09 64.3 87 36.8
RcHm_v2.0_Chr5g0082531 Rosa chinensis HOM05D000687 ORTHO05D000515 8.6e-09 64.3 87 36.8
DCAR_024335 Daucus carota HOM05D000687 ORTHO05D000515 1.1e-08 63.9 73 39.7
SEGI_27636 Sequoiadendron giganteum HOM05D000687 ORTHO05D000515 1.1e-08 63.9 65 41.5
HPP92_020683 Vanilla planifolia HOM05D000687 ORTHO05D000515 1.1e-08 63.9 99 34.3
Cfa009609 Carpinus fangiana HOM05D000687 ORTHO05D000515 1.5e-08 63.5 104 31.7
RcHm_v2.0_Chr5g0082001 Rosa chinensis HOM05D000687 ORTHO05D000515 1.5e-08 63.5 87 36.8
arahy.Tifrunner.gnm1.ann1.3SGI17 Arachis hypogaea HOM05D000001 ORTHO05D001705 1.9e-08 63.2 82 36.6
Cpa.g.sc119.80 Carica papaya HOM05D000687 ORTHO05D000515 2.5e-08 62.8 79 34.2
FAN21G1817 Fragaria x ananassa HOM05D000687 ORTHO05D000515 2.5e-08 62.8 116 31.9
MD03G1007700 Malus domestica HOM05D000687 ORTHO05D000515 2.5e-08 62.8 118 32.2
BcaB02g10833 Brassica carinata HOM05D000687 ORTHO05D000515 3.3e-08 62.4 76 38.2
HanXRQChr13g0404121 Helianthus annuus HOM05D000687 ORTHO05D000515 3.3e-08 62.4 107 31.8
Lj1P549T8 Lonicera japonica HOM05D000687 ORTHO05D000515 3.3e-08 62.4 79 38.0
Lj1P552T9 Lonicera japonica HOM05D000687 ORTHO05D000515 3.3e-08 62.4 79 38.0
Oeu040302.1 Olea europaea HOM05D000687 ORTHO05D000515 3.3e-08 62.4 101 33.7
PGR119G0386 Punica granatum HOM05D000687 ORTHO05D000515 3.3e-08 62.4 79 38.0
QL01p008034 Quercus lobata HOM05D000687 ORTHO05D000515 3.3e-08 62.4 103 30.1
RcHm_v2.0_Chr5g0082171 Rosa chinensis HOM05D000687 ORTHO05D000515 3.3e-08 62.4 87 35.6
SalBow6G5952 Salvia bowleyana HOM05D000687 ORTHO05D000515 3.3e-08 62.4 104 32.7
MELO3C015079.2 Cucumis melo HOM05D000687 ORTHO05D000515 4.3e-08 62.0 73 37.0
Migut.D02528 Erythranthe guttata HOM05D000687 ORTHO05D000515 4.3e-08 62.0 109 30.3
FAN11G2123 Fragaria x ananassa HOM05D000687 ORTHO05D000515 4.3e-08 62.0 76 36.8
Potri.001G008320 Populus trichocarpa HOM05D000687 ORTHO05D000515 4.3e-08 62.0 73 38.4
Haze_22980 Corylus avellana HOM05D000687 ORTHO05D000515 5.6e-08 61.6 81 33.3
FAN25G0545 Fragaria x ananassa HOM05D000687 ORTHO05D000515 5.6e-08 61.6 114 32.5
Prupe.6G009400 Prunus persica HOM05D000687 ORTHO05D000515 5.6e-08 61.6 76 35.5
RcHm_v2.0_Chr5g0082391 Rosa chinensis HOM05D000687 ORTHO05D000515 5.6e-08 61.6 87 35.6
Ciclev10016930m.g Citrus clementina HOM05D000687 ORTHO05D000515 7.3e-08 61.2 102 33.3
Lalb_Chr07g0186681 Lupinus albus HOM05D000687 ORTHO05D000515 7.3e-08 61.2 73 38.4
FvH4_3g45000 Fragaria vesca HOM05D000687 ORTHO05D000515 9.5e-08 60.8 118 30.5
FAN11G1656 Fragaria x ananassa HOM05D000687 ORTHO05D000515 9.5e-08 60.8 118 30.5
Gohir.D05G318700 Gossypium hirsutum HOM05D000687 ORTHO05D000515 9.5e-08 60.8 76 35.5
Gorai.009G341700 Gossypium raimondii HOM05D000687 ORTHO05D000515 9.5e-08 60.8 76 35.5
Nn7g35923 Nelumbo nucifera HOM05D000687 ORTHO05D000515 9.5e-08 60.8 77 35.1
CAN.G575.6 Capsicum annuum HOM05D000687 ORTHO05D000515 1.2e-07 60.5 78 35.9
RcHm_v2.0_Chr5g0082751 Rosa chinensis HOM05D000687 ORTHO05D000515 1.2e-07 60.5 87 36.8
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.6e-07 60.1 83 30.1
Eucgr.J01799 Eucalyptus grandis HOM05D000687 ORTHO05D000515 1.6e-07 60.1 84 35.7
MD11G1010900 Malus domestica HOM05D000687 ORTHO05D000515 1.6e-07 60.1 114 31.6
unitig_26.g9442 Utricularia gibba HOM05D001030 ORTHO05D002278 1.6e-07 60.1 74 35.1
MSTRG.20949 Avicennia marina HOM05D000687 ORTHO05D000515 2.1e-07 59.7 108 31.5
Gohir.A05G317000 Gossypium hirsutum HOM05D000687 ORTHO05D000515 2.1e-07 59.7 76 35.5
Lj2P716T13 Lonicera japonica HOM05D000687 ORTHO05D000515 2.1e-07 59.7 72 37.5
Nn7g35925 Nelumbo nucifera HOM05D000687 ORTHO05D000515 2.1e-07 59.7 79 34.2
Phvul.002G234500 Phaseolus vulgaris HOM05D000687 ORTHO05D000515 2.1e-07 59.7 73 34.2
TAR623G1277 Trochodendron aralioides HOM05D000687 ORTHO05D000515 2.1e-07 59.7 73 35.6
TAR623G1466 Trochodendron aralioides HOM05D000687 ORTHO05D000515 2.1e-07 59.7 76 34.2
vmacro12614 Vaccinium macrocarpon HOM05D000687 ORTHO05D000515 2.1e-07 59.7 101 29.7
Actinidia06290 Actinidia chinensis HOM05D000687 ORTHO05D000515 2.8e-07 59.3 81 33.3
Duzib150G0869 Durio zibethinus HOM05D000687 ORTHO05D000515 2.8e-07 59.3 73 35.6
Potri.003G217300 Populus trichocarpa HOM05D000687 ORTHO05D000515 2.8e-07 59.3 73 32.9
SGA_v2.0_scaffold18G08314 Striga asiatica HOM05D000687 ORTHO05D000515 2.8e-07 59.3 104 29.8
BcaC08g44184 Brassica carinata HOM05D000687 ORTHO05D000515 3.6e-07 58.9 76 35.5
BolC6t36781H Brassica oleracea HOM05D000687 ORTHO05D000515 3.6e-07 58.9 76 35.5
Cc01_g02430 Coffea canephora HOM05D000687 ORTHO05D000515 3.6e-07 58.9 71 35.2
ECA238G1047 Erigeron canadensis HOM05D000687 ORTHO05D000515 3.6e-07 58.9 83 32.5
MBI01_g46866_MAGBIO Magnolia biondii HOM05D000687 ORTHO05D000515 3.6e-07 58.9 73 35.6
MBI01_g48122_MAGBIO Magnolia biondii HOM05D000687 ORTHO05D000515 3.6e-07 58.9 73 35.6
Oeu033929.1 Olea europaea HOM05D000687 ORTHO05D000515 3.6e-07 58.9 72 36.1
Sc09g0000240 Simmondsia chinensis HOM05D000687 ORTHO05D000515 3.6e-07 58.9 87 32.2
TWI34G0696 Tripterygium wilfordii HOM05D000687 ORTHO05D000515 3.6e-07 58.9 80 38.8
Actinidia39361 Actinidia chinensis HOM05D000687 ORTHO05D000515 4.7e-07 58.5 103 30.1
C06p15890 Brassica napus HOM05D000687 ORTHO05D000515 4.7e-07 58.5 76 35.5
HanXRQChr14g0453341 Helianthus annuus HOM05D000687 ORTHO05D000515 4.7e-07 58.5 72 33.3
Potri.001G008240 Populus trichocarpa HOM05D000687 ORTHO05D000515 4.7e-07 58.5 73 35.6
PGR119G2239 Punica granatum HOM05D000687 ORTHO05D000515 4.7e-07 58.5 100 31.0
RcHm_v2.0_Chr5g0081931 Rosa chinensis HOM05D000687 ORTHO05D000515 4.7e-07 58.5 87 34.5
THA.LOC104815660 Tarenaya hassleriana HOM05D000687 ORTHO05D000515 4.7e-07 58.5 82 32.9
Aa31LG10G1030 Aethionema arabicum HOM05D001204 ORTHO05D001428 6.2e-07 58.2 74 36.5
A05p17590 Brassica napus HOM05D000687 ORTHO05D000515 6.2e-07 58.2 76 35.5
BraA05t20652Z Brassica rapa HOM05D000687 ORTHO05D000515 6.2e-07 58.2 76 35.5
Lsat_1_v5_gn_2_101660 Lactuca sativa HOM05D000687 ORTHO05D000515 6.2e-07 58.2 101 29.7
SEGI_30105 Sequoiadendron giganteum HOM05D000687 ORTHO05D000515 6.2e-07 58.2 73 34.2
SEGI_40499 Sequoiadendron giganteum HOM05D000687 ORTHO05D000515 6.2e-07 58.2 65 40.0
vmacro12613 Vaccinium macrocarpon HOM05D000687 ORTHO05D000515 6.2e-07 58.2 82 32.9
GSVIVG01033439001 Vitis vinifera HOM05D000687 ORTHO05D000515 6.2e-07 58.2 72 34.7
Carub.0001s4377 Capsella rubella HOM05D000687 ORTHO05D000515 8.1e-07 57.8 80 36.2
AUR62000020 Chenopodium quinoa HOM05D000687 ORTHO05D000515 8.1e-07 57.8 75 36.0
Hma1.2p1_0843F.1_g227220 Hydrangea macrophylla HOM05D000687 ORTHO05D000515 8.1e-07 57.8 72 36.1
Manes.15G105900 Manihot esculenta HOM05D000687 ORTHO05D000515 8.1e-07 57.8 74 31.1
Potri.003G217200 Populus trichocarpa HOM05D000687 ORTHO05D000515 8.1e-07 57.8 79 35.4
Sabra03G0162200 Salix brachista HOM05D000687 ORTHO05D000515 8.1e-07 57.8 79 34.2
Thecc.09G211300 Theobroma cacao HOM05D000687 ORTHO05D000515 8.1e-07 57.8 73 34.2
Cpa.g.c39995 Carica papaya HOM05D000687 ORTHO05D000515 1.1e-06 57.4 79 31.6
PSO384G0006 Papaver somniferum HOM05D000687 ORTHO05D000515 1.1e-06 57.4 101 30.7
CDE05G3074 Ceratophyllum demersum HOM05D000687 ORTHO05D000515 1.4e-06 57.0 71 38.0
Nitab4.5_0001059g0040 Nicotiana tabacum HOM05D000687 ORTHO05D000515 1.4e-06 57.0 102 30.4
Prupe.6G009800 Prunus persica HOM05D000687 ORTHO05D000515 1.4e-06 57.0 104 29.8
Rhsim01G0185400 Rhododendron simsii HOM05D000687 ORTHO05D000515 1.4e-06 57.0 82 34.1
HPP92_015938 Vanilla planifolia HOM05D000687 ORTHO05D000515 1.4e-06 57.0 76 36.8
ClCG03G012060 Citrullus lanatus HOM05D000687 ORTHO05D000515 1.8e-06 56.6 73 32.9
Ciclev10016939m.g Citrus clementina HOM05D000687 ORTHO05D000515 1.8e-06 56.6 79 34.2
Dinv13434 Davidia involucrata HOM05D000687 ORTHO05D000515 1.8e-06 56.6 76 31.6
FAN21G3570 Fragaria x ananassa HOM05D000687 ORTHO05D000515 1.8e-06 56.6 70 35.7
Lalb_Chr07g0186691 Lupinus albus HOM05D000687 ORTHO05D000515 1.8e-06 56.6 112 29.5
PSO339G5137 Papaver somniferum HOM05D000687 ORTHO05D000515 1.8e-06 56.6 101 30.7
TWI32G0573 Tripterygium wilfordii HOM05D000687 ORTHO05D000515 1.8e-06 56.6 108 29.6
TAR633G2389 Trochodendron aralioides HOM05D000687 ORTHO05D000515 1.8e-06 56.6 76 32.9
TAR633G2591 Trochodendron aralioides HOM05D000687 ORTHO05D000515 1.8e-06 56.6 76 32.9
CSS0021648 Camellia sinensis var. sinensis HOM05D000687 ORTHO05D000515 2.4e-06 56.2 83 30.1
CSS0032662 Camellia sinensis var. sinensis HOM05D000687 ORTHO05D000515 2.4e-06 56.2 83 30.1
CsaV3_1G043700 Cucumis sativus L. HOM05D000687 ORTHO05D000515 2.4e-06 56.2 73 35.6
Hma1.2p1_0337F.1_g129440 Hydrangea macrophylla HOM05D000687 ORTHO05D000515 2.4e-06 56.2 73 37.0
Manes.03G088300 Manihot esculenta HOM05D000687 ORTHO05D000515 2.4e-06 56.2 74 29.7
Nitab4.5_0000254g0250 Nicotiana tabacum HOM05D000687 ORTHO05D000515 2.4e-06 56.2 76 32.9
Sabra01G0006400 Salix brachista HOM05D000687 ORTHO05D000515 2.4e-06 56.2 73 35.6
SGA_v2.0_scaffold6G03426 Striga asiatica HOM05D000687 ORTHO05D000515 2.4e-06 56.2 97 29.9
TWI60G1469 Tripterygium wilfordii HOM05D000687 ORTHO05D000515 2.4e-06 56.2 72 34.7
ATR0001G017 Amborella trichopoda HOM05D000687 ORTHO05D000515 3.1e-06 55.8 102 27.5
FAN16G1395 Fragaria x ananassa HOM05D000687 ORTHO05D000515 3.1e-06 55.8 83 32.5
FAN25G1069 Fragaria x ananassa HOM05D000687 ORTHO05D000515 3.1e-06 55.8 83 32.5
Glyma.08G112400 Glycine max HOM05D000687 ORTHO05D000515 3.1e-06 55.8 73 31.5
Peaxi162Scf00062g02214 Petunia axillaris HOM05D000001 ORTHO05D000003 3.1e-06 55.8 77 33.8
PGR102G2471 Punica granatum HOM05D000687 ORTHO05D000515 3.1e-06 55.8 72 33.3
COL.COLO4_35000 Corchorus olitorius HOM05D000687 ORTHO05D000515 4.0e-06 55.5 83 32.5
Sp1g40930 Schrenkiella parvula HOM05D000687 ORTHO05D000515 4.0e-06 55.5 74 33.8
Hund07575 Selenicereus undatus HOM05D000687 ORTHO05D000515 4.0e-06 55.5 79 34.2
THA.LOC104807530 Tarenaya hassleriana HOM05D000687 ORTHO05D000515 4.0e-06 55.5 81 32.1
HanXRQChr13g0405121 Helianthus annuus HOM05D013023 ORTHO05D221139 5.2e-06 55.1 108 33.3
Lj4g0003071 Lotus japonicus HOM05D000687 ORTHO05D000515 5.2e-06 55.1 80 36.2
Medtr8g085580 Medicago truncatula HOM05D000687 ORTHO05D000515 5.2e-06 55.1 72 33.3
Rhsim01G0185300 Rhododendron simsii HOM05D000687 ORTHO05D000515 5.2e-06 55.1 81 33.3
CiPaw.13G174300 Carya illinoinensis HOM05D000687 ORTHO05D000515 6.8e-06 54.7 72 34.7
MBI01_g46867_MAGBIO Magnolia biondii HOM05D000687 ORTHO05D000515 6.8e-06 54.7 86 31.4
Atru.chr3.2323 Acer truncatum HOM05D000687 ORTHO05D000515 8.9e-06 54.3 119 29.4
Lj2P716T9 Lonicera japonica HOM05D000687 ORTHO05D000515 8.9e-06 54.3 74 35.1
MD11G1011000 Malus domestica HOM05D000687 ORTHO05D000515 8.9e-06 54.3 103 28.2
Potri.001G008400 Populus trichocarpa HOM05D000687 ORTHO05D000515 8.9e-06 54.3 73 32.9
VMungo0251G1329 Vigna mungo HOM05D000687 ORTHO05D000515 8.9e-06 54.3 73 32.9


User provided reference genes

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